RNA id: XM_026924511.2


Basic Information

Item Value
RNA id XM_026924511.2
length 3497
RNA type mRNA
GC content 0.51
exon number 12
gene id slc9a1a
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4501487 ~ 4545347 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAATTACAGGCTCTCTCCATTCCCTATACGCAAACGTCTGCCCAATGGGTGTGTTTTGGAGCTGCTATTTAATCCGCAGCGTCATCACCGCAAGCGCGAGATGCTGACTCTGTGCGCGCGAGGCGTTTGTTAACGTTCCTGCATCGGCACCTGAACGGAAAGCGGAACGGAAACCTAACCTCCCCCCCTGTCTTCCCTCCACCCTGACCCTCAGCAGGAGCGTTTCATTCCTGAAGGGAGAGTGCACAGAGCGTGAGGAACAGAGTGGAAGTCTTAGAAAAGTCTTCAGTTAGTTCGTTgctttgccttttttctttgtatatgtatttgttCGTGCGCGCGGCGGTCTCGCGGAGAAGAGTCACGCGCTAAATTCAAACATTCAGACCCGGCTCACGCGCTGCGAGCGCTGGATGCTGACATTGTGAACGTCCTTTCTTTTtcgtccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagaataaactcGTATCCGTCTCTCCCGGTGTCCGACTGTCATTTCTGAGTCTTCCGTGAACGAATGGCAGGTTAGcatcattttttccctctcagaaTGTTATTAGCTGCTGCTAACTGACAAAGCTAAACTTAAATTCCTTGTTGGATTACATACCTGAAAAAGGCGTGTTAGCATAGCATTCTAGCTAGCTGGCTGTAGTGTTGAGTGTTAGGAAACTAGGAACTAGCCTTGGCTAACTCAAACGATTAGCCAGACGGAGATTACAATTTCTAAAGATGCTGCCTAGTATATTTTCCTGAAGCTCGTGTCAGGTCGTAAACACACTCCACCATGGCATCACCAGTGGACCGGActttactgctgctgctggtggtgatgatggtgatggtctCCGGGATCTCGGTGCTCGCCAGTTCCCCGCAGAACTCCCACGAGAAGCCGAGCAGCGATCCCAAGACCTCAGGACATGGAGGAGCTCATCAGGGCAATTTGACCAAGAAGATTTTCCCCGTGTTGGATTTCGATTATGAACACGTCCACAATCCTTTCGTCATATTCCTCTGGATCCTGCTGGCTTCCCTGATGAAACTAGgGTTTCACTTGATCCCGCAGTTGTCCTCGATTGTTCCAGAGAGCTGTCTGCTGATCGTGGTGGGTCTTATAGTAGGCGGGCTCATCAAGCTCCTGGGCGAGACCCCACCTGTACTCGGTTCCGAcctcttcttcctctgtcttCTCCCTCCAATCATCTTGGATGCTGGCTACTTCTTACCCATAAGGCCCTTCACGGAGAACCTGGGCACCATCCTCATGTTCGCTGTGGTGGGCACTCTGTGGAACGCCTTCTTCATCGGCGGCCTGCTCTATGGTGTGTGTCAGATCGAGGGCACTAACCTAGGCACAGTGACTCTGCTGCCCTGCCTGCTGTTCGGGGCCATTATCTCCGCCGTGGATCCCGTGGCCGTCCTGGCCGTGTTTGAGGAGATTCACATCAATGAGCTTCTGCACATCCTCGTGTTCGGCGAGTCGCTGCTTAATGACGCCGTCACAGTGGTTCTGTATCACCTGTTTGAGGAATACTCAGGTGTGGGCACTGTGACTGTAGGAGATGTCTTCCTGGGCATCGTGTCTTTCTTGGTGGTGTCTCTGGGTGGCGTACTGGTAGGCGCCATCTACGGCATCCTGACGGCCTTCACCTCCCGTTTCACCTCCCACACGCGCGTTATCGAGCCGCTATTCGTCTTCGTCTACAGCTACTTGGCGTACCTGTCAGCTGAGGTGTTCCACTTGTCCGGCATCATGGCACTGATTGCGTGTGGCGCTGTAATGCGGCCCTACGTGGAGGCCAACATATCCCACAAGTCTCACACCACCATCAAGTACTTCCTAAAGATGTGGAGCAGCGTGAGCGAGACGCTCATCTTCATCTTTCTCGGGGTGTCCACAGTGGCCGGGACTCACAGGTGGAACTGGACGTTTGTCACAGTGACCGTAATCCTGTGCATGGTGGCTCGCGTTCTTGgggTCATCGGTTTGACCTTTGTGATCAACAAATTCCGCATAGTAAAACTCACCACCAAGGACCAGTTCATCATTGCGTATGGCGGACTGAGAGGAGCAATCGCTTTCTCGCTGGTCTACCTGCTCAAAGAGGATCACTTCCCTATGAGGAACATGTTTGTCACAGCTGTCATCACAGTCATCTTCTTCACTGTCTTTGTGCAGGGGATGACCATTCGTCCTCTGGTGGACCTGCTGGCCGTTAAGAAGAAGCAGGAAGCCAAGCGATCCATCAACGAGGAGATCCACACCCAGtTTTTGGACCACCTGCTGACCGGTATCGAGGACATCTGCGGACATTATGGACATCATCACTGGAAGGACAAGCTGAACCGCTTCAACAAGAAGTACGTGAAGAAATGCCTGATAGCAGGCGAGCGCTCTAAAGAGCCCCAGCTCATCGCCTTCTATCACAAGATGGAAATGAAGCAGGCCATCGAGCTGGTGGAGAGTGGGGGAGGAGCTAAACTACCATCTGCCATGCCATCCACCGTGTCCATGCAaAATATCCAGCCCAAGAAACCTCCAGAGAGAATGCTGCCTCAGTTATCAAAGGGCCAAGAGGAGGAGATCCAGAAGATTCTACGCAACAACCTGCAGAGGACACGGCAGAGATTGCAGTCCTATAACAGACACACGCTGGTGGCTGACCCGTTCGAGGATGGCTTTAAGGAGCTTATAATCAAGAGGAAGAGGATAAAGGATTTGGAGAAGAAGCTTTCTCAGATGAATAATTACCTCACCGTTCCAGCTGCACCTTCTGATTCTCCCACCATTGCCAGATCAAGACTGGCTTCTGACCCTCAGGCCTGGAGCATAAAGCCGGCAAACAAAGACATCCCAGCTATTAAAGTGGACCTGGCTTCACCTCAAAGCCCAGACTCACTCACCATGTTGGACGAGTTTGGCAAGGCAACGGGGCAAGACCCAgccgaggaggaggaggggctAGTGATGCGGCGAAAGAAAGACGACAGAACGGGAGAGCAAGGAGAGCAAGAAGATGCGAAAGAGCAGCGACTCCTCCGCTGCCTGAGTGACCCCGGCCCTGCCATCGAcgaggaagaagaggatgagCCCTTCCTCCGCTGATGGAAAGAGATGCATGTGACTGGCTATATGCCTGTTTTATTAGCAGTGACACTATCATTCTGAAAGATGGCTGGGGGCGTTGAGAATTTGTTTTAACACGGCACTGTCTTACAAACAGAATTTTGTCCGTTCTTCTTTTGGGGGAGCGGGAGTTGGGGGGGTTGGGTTGAGGATTACTGAACTTTAAGCCAAAATGATAACTCATAAGAGAAAAGTCAAtgaaccaaaaaaagaaaaatcacaacGAACGGGagggtcaaaaaaaaaaaataagaaaaatagcCATTATTTTCTAGCGTTGTCTTTCTTGTCAAAGGAAA

Function

GO: NA

KEGG:

id description
K05742 SLC9A1, NHE1; solute carrier family 9 (sodium/hydrogen exchanger), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576935.1 lncRNA upstream 32637 4466508 ~ 4468850 (+) True LOC117595758
TU386681 lncRNA upstream 94926 4398678 ~ 4406561 (+) False LOC113532991
TU386679 lncRNA upstream 106703 4391584 ~ 4394784 (+) False hmgn2
TU386648 lncRNA upstream 142369 4319215 ~ 4359118 (+) True G326288
TU386632 lncRNA upstream 149640 4348781 ~ 4351847 (+) True G326281
TU386740 lncRNA downstream 34203 4579550 ~ 4587322 (+) True G326369
TU386745 lncRNA downstream 103678 4649025 ~ 4656515 (+) True G326374
XR_003403355.2 lncRNA downstream 255225 4800572 ~ 4803511 (+) True LOC113532560
TU386800 lncRNA downstream 258490 4803837 ~ 4804059 (+) True G326429
TU386812 lncRNA downstream 378831 4924178 ~ 4924636 (+) True G326440
XM_034298293.1 mRNA upstream 67236 4398659 ~ 4434251 (+) False LOC113532991
XM_034298292.1 mRNA upstream 67236 4398666 ~ 4434251 (+) True LOC113532991
XM_026924760.2 mRNA upstream 67236 4426586 ~ 4434251 (+) False LOC113532991
XM_034298294.1 mRNA upstream 67236 4430161 ~ 4434251 (+) False LOC113532991
XM_026923895.2 mRNA upstream 106703 4391520 ~ 4394784 (+) True hmgn2
XM_026924220.2 mRNA downstream 10778 4556125 ~ 4770616 (+) False LOC113532696
XM_026924218.2 mRNA downstream 15909 4561256 ~ 4770616 (+) True LOC113532696
XM_026923880.2 mRNA downstream 297112 4842459 ~ 4856152 (+) True ifnlr1
XM_026924871.2 mRNA downstream 319222 4864569 ~ 4918469 (+) True myom3
XM_026924089.2 mRNA downstream 375826 4921173 ~ 4923671 (+) False fabp10a
TU386582 other upstream 487949 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 1931748 2565700 ~ 2569739 (+) False G325435
XR_003403389.2 other upstream 2287188 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other upstream 2287226 2210222 ~ 2214261 (+) False LOC113533074
TU385279 other upstream 2356976 2142506 ~ 2144511 (+) False bola1
TU386810 other downstream 375633 4920980 ~ 4923681 (+) True fabp10a
TU386814 other downstream 379439 4924786 ~ 4930154 (+) True srsf10a
TU387482 other downstream 786921 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 3356445 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 3842840 8388187 ~ 8484833 (+) False LOC113532774

Expression Profile