RNA id: XM_026924547.2


Basic Information

Item Value
RNA id XM_026924547.2
length 4355
RNA type mRNA
GC content 0.49
exon number 17
gene id oxr1a
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5603689 ~ 5779393 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTCTATACTGAGAAGGTCAAATTACTCTGCACGTCGCGCGCGTCCGGTGAAGCTGCGGCTCCTGTCAGAGGAACCGGCGCGGGACAGGCGGCTTTCCTCAGCATGGACTGAACGTCTGCTCCCTGAAGCAAAGCCTGTCCTCCTGACTTTCCGGAAGCTTCTGTATTGGAGAGAGAAGACATCGGCAACATGTTCAGCACCAAAAGACTGAAGAAGAAGTCCCAGTCGGTGGACATCGCCTCTCAAGGCTTCTCCAGTTTCATCCCGAGTCTGTCCATAAACAGGTCCTCATCACCTGTTGCCAAAACGACCACAATCGAGGTGCAGGAAAACAACACGACCAATTCCCAGTGGCGCACTTCACGATGCAGCGAGCTGAAGAGAGGCTACACCATAGATACTGGCCAGAAGAAGACGCCTGACAAGAAGGATGGACGCCGTATGTCCTTCCAGCGACCCAAAGGGACCATCGAGTATTCCGTGGAATCACGGGACACTCTGAACAGCATAGCGCTGAAGTTTGATACCACCCCCAACGAGCTGGTTCAGCTCAACAAGCTATTCTCCAGAGCCGTCGTCCCCGGACAGGTTCTATATGTTCCTGATCCCGAGTATGTGTCAAGTGCGGGCAGCTCCCCATCCCTCAGCCCCATCAGCCCCCTGTCTCCCACTTCCTCCGAGGCTGAACTAGAAAAGGACTCTGATGGAGGTCCTCGCTCAGACACCCCAGCCTCGGCACCGCCAGCTTTCTCGGTCCTCCGCCACTCCCGCATCGTCTCCTCCACCTCGGAGGAAGAGGAGGCGCTCACTGAGAAGTTCCTCAAAATCAACTGCAAGTACATCACAGATGGCAAGGGGGCTGTAAGTGGGGTGTTGCTGGTGACACCCAACAATATCATGTTTGACCCTCACCGGACAGACCCGCTGGTGCAGGAGCGCGGCTGTGAGGAGTACGGCATCATGTGCCCACTGGAGGAGGTGCAATCTGCAGCCGTGTATCGAGAGATCACAGACAGCAAGATCCGCGAATCCTTGCCAGCGGACGTTGATGCATGGTTCTCAGGGCCTGCTCATCACCCAGAACTGCGTCTGAGAGAGGCATACGACAGTGGCAGCACAGCCCCACGCAGCACGGATGCCTCGCTCTCCGAGGATGTGTTCACCGAGCCTGAGCTCTCACCTATCCGAGAGGAGCAGCCATCCACCCAGCAGCCCCAGAGTGAGGATCAGTCGTCCTCTGAATCCGTACACACAGTCAGGCATGACCCAGAGGAAGAGGCAAAGCCAAAGGACAAGGAAGGAGAAAAGACACAGGGAGATGCAGGAGAAGAAACCGCCAGCGCTTCAGATGAGCCCAGAAGCAAGGAGCAGCGAAGTACCTCAACCAGCAGTGACCAAGAGCAGCACCAGACACAAGCCACACCCTCCCAGAGTTCCACTGCCACAGTGGTCACAGATCAGGAACGCGACTCAGACGAGGCTAAAACCACCAGAGACGGCAAGCGAGACTCGGAAACTGATGTGGAGGAGCTGAGAAAGATGTGGAAGAGTCACACTATGCAACAGGCCAAGGAGCAGCGAGATAatgcacagcacacacagaaagagactgTGTCAGGCAAAGGCAGTCAGAGACAGGGCTCAGTAGAGGGTCTGGCTGTGTCCAGGGAGAGGCGGCTGTCCAGGTCTCATAAGTTTCTGTGCCTGCGCGTCGGCAAGGCCATGAAGAAGACGTTTGTGTCCAATGCCAGCGCCTCCATGCAGCAGTATGCCCAGCGTGATCGTAAACACGAGTACTGGTTCTCTGTGCCGCAGGAGAGGTCAGACCACCTTTATTTGTTCTTCATCCAGTGGAGCCCGGAGACATTCGGCGATGGCATGGGAAGCGTCAGCCGTGAGCCTGGGTTCATGGTAGTTAAAAAAATCGACGAACCTGAACCCGACAATGAGCAGACAACGTCAGACTCCTCATCCAAGGAGTGGGAGGTAGTGTCACTGAGCGAACACCACCGCCGGATCGATGCACTAAACACTGAAGATCTGCGTGCCCTGTGCAAACGGCTCCAGATCACCACAAAAGAGGAGGTGACCTCCAAACATGGCACATCTATCACAGCCAGCCTGGAGCCGGAGACCTTTAAACCCAACTTGAGTGAACCTAGCGACCTCCTGGAAGCCGAACAGATAGAGAAGctggcaaagcatctcccaCCCAGAACCATAGGCTATCCATGGACGCTGGCATTCAGCACGTCCAAGCACGGCATGAGTATTAAAACCCTGTACCGGATCATGCAGGGGCAGGACTCTCCCGTTGTCCTCGTCATTAAAGACAGTGACGGGCAGGTGTTTGGGGCATTAGCATCAGAGCCCTTTAAAGTCAGCGACGGATTTTACGGCACAGGAGAAACGTTTCTCTTCTCCTTCTATCCACAGTTTGAGGTCTACAAATGGACAGGTGATAACATGTTCTTTATCAAAGGAGACATGGACTCCCTGGCATTTGGTGGAGGAAGTGGTGAATTTGGTTTGTGGCTGGACGGAGATCTCTACCATGGCAGGAGTCACTCATGCAAAACATTTGGGAACCCGATGCTCTCCGTGAAGGAGGACTTCTTCGTGCAGGACATTGAGATCTGGTCGTTCGAGTAGGCCACTCTctccatgagagagagaaagagagaaagatggctCCAGTCAGGGAAACAAAGCCAACCAGATGTCTCTGTGCTGGCCAGAAGTGTCCCAAACCTTAATGTGCATCACCTCGGCTCCCAGGAAGCCTGTTTTAAAGCAGCATAATCTCTTTATGCTTGCCGTATGTTACTAATGCATTTAACACAAATCTTTTTCCcccactctctctttcctcgTGCTGTTACCATGTGTACTTTGTTCCAAGCTTCAGTGCAAGGTGTGTTTAGGTGAGCAGAAAGCTGAGACGCACCGTGACAATCATCAGTGAGCGTTCAAGTACTGATTACAGGGGACCACTGGAGCGCTTTGAACGTCAGATGGTGATGCTGGCATAGGTTTGGGACAAGATGGATCTGTTACAGATCGAGGCAGAAAGCTTCATTGGATGTTACTAATGCAATGGCCTCACAGGAGatggacaaaaaaagaaatggaagtAACTACAAACACATTCCTGTGCCCTTTGAGACTACAGAAATGTTTGACAGGTAACAGGATCGCCTGAGGGCAGCATCCATgcagagagcaaaaaaaatgcGAGTGTACATCCTGAGTTTCTTCTGAAGCGAATTATACAAGTGTTGTGAATTCATAGTCTTTCTGTCGTTCACCATCATAGATCCACCGCAGTAAAGCACATAGCCCTTAATCTATGAAGAAAAACATTGTCGTACCGTTCTGTTAAGTGGGTTTATGTGTGAGTTCAGCTTCCTCCGTGTGTGGAGGGTCGTGTGTACTGTTCGTAGACAGTAATGTGTTGCAATAGATTTTGTGGAATATGCAAACTACTGTTCTTGTTAACCTCAATAATCCGGACGGGATCTTTTGTGTCCTTCCCGTCGCTCTTTCAAACTAACTTTTAAAAGCTTTTACGTCTGGACAGAAAATTGCTTTTCGGGGTATCATTTGAAAAGctggagatgtttttttttgtttgtttgtttttttttttttcataaatataatgacaattatatatttatgtatataattatataacaaattctatatatatacatatatatatgtaattatatattgCTGTTACGTGTGACAGTGATCTTTTTTGTGCTGATATCTCAGCTGTTACcaatataatgtacagtatattaccctgtaaattaatgttaaaatagTAGATTTGTtcctatatataaatatataattattagcaGACAAATATATAGAGTGTGGATTGGTGGGTTGCTTCTAGCACTTTAATCTAGTTTAAAGCCAGATGCTTTCGGCTTTCTTTGCAGTAGCTGTACAgtctttattatatatatattttttgttcctttatttgtgtgtttagaaaTTAACAGATGTTAGCTGTTTATGAAGAGCTTTCTGCTACACTGTTGGGAAAATGTAGCTAAAGCCCTGAATCTAATGTCCGAGTCCAGTGGGGTTAGATTCTCTCCTCACATGTCTCGTCTCGATGCTGTGTCTTTGTTGGTGTGTAGATTCACTGTTCACAGGCTGAGGGAGGATGAGGAGGGTGAAGAAGAGCAGGTAATCATCAGACCCTCATCACTCTTCCCATACCAGCGAGTTCTGTCAATGTGGAGTCACAGACGAGGTCCAGTGTGAACAAAATGCTCCAGCCGATTCGCTGGAATACAATGTAAtagtgatgtaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387604 lncRNA downstream 210107 5392222 ~ 5393582 (-) True G327100
TU387478 lncRNA downstream 289034 5314207 ~ 5314655 (-) True G326995
TU387472 lncRNA downstream 293424 5310049 ~ 5310265 (-) True G326989
TU387455 lncRNA downstream 308457 5294732 ~ 5295232 (-) True G326981
TU387428 lncRNA downstream 346413 5257051 ~ 5257276 (-) True G326960
TU388044 lncRNA upstream 56677 5836070 ~ 5836306 (-) True G327505
TU388046 lncRNA upstream 58096 5837489 ~ 5837782 (-) True G327507
TU388047 lncRNA upstream 58490 5837883 ~ 5838277 (-) True G327508
TU388102 lncRNA upstream 303973 6083366 ~ 6084649 (-) True G327560
TU388498 lncRNA upstream 477010 6256403 ~ 6331285 (-) False arhgap33
XM_026924818.2 mRNA downstream 41679 5554727 ~ 5562010 (-) True zmp:0000000930
XM_026924321.2 mRNA downstream 57350 5541357 ~ 5546339 (-) True psma2
XM_026924319.2 mRNA downstream 62712 5522793 ~ 5540977 (-) True LOC113532747
XM_026924320.2 mRNA downstream 62713 5522793 ~ 5540976 (-) False LOC113532747
XM_026924633.2 mRNA downstream 81306 5514842 ~ 5522383 (-) False LOC113532914
XM_026924617.2 mRNA upstream 50081 5829474 ~ 5978379 (-) True zfpm2a
XM_026924618.2 mRNA upstream 50081 5829474 ~ 5854552 (-) False zfpm2a
XM_034298140.1 mRNA upstream 305948 6085341 ~ 6087808 (-) True LOC113532744
XM_034297918.1 mRNA upstream 314638 6094031 ~ 6288364 (-) False rims2a
XM_034297915.1 mRNA upstream 314638 6094031 ~ 6288364 (-) False rims2a
TU387192 other downstream 626162 4963617 ~ 4977527 (-) False ubr5
TU387191 other downstream 626236 4963617 ~ 4977453 (-) False ubr5
TU386070 other downstream 2364542 3237701 ~ 3239147 (-) False LOC113532533
TU385328 other downstream 3506254 2088259 ~ 2097435 (-) True G325145
TU384835 other downstream 4152973 1429932 ~ 1450716 (-) False kif13a
XR_003403372.2 other upstream 50081 5829474 ~ 5978379 (-) False zfpm2a
TU388042 other upstream 96703 5876096 ~ 5978268 (-) False zfpm2a
trnam-cau_47 other upstream 650467 6429860 ~ 6429932 (-) True trnam-cau_47
TU388974 other upstream 1277401 7056794 ~ 7062428 (-) True G328342
TU389089 other upstream 1599387 7378780 ~ 7386306 (-) False sec61b

Expression Profile