RNA id: XM_026924580.2


Basic Information

Item Value
RNA id XM_026924580.2
length 2111
RNA type mRNA
GC content 0.43
exon number 2
gene id rbm12ba
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7121016 ~ 7123391 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTCGCGAGCTCATGCTGGGGCAGCTGTGTGGTGTTTACGCGCGCGTGAaccttgtctttttttcttttcccgcCAGATATCTTGTACGAATTATTACGAATTTAATAAATTAGTCTCGTCTTTCACGAAAACGTGAAAGCCAGGCAGACATGGCAGTAGTTCTGCGTTTACAGGGTCTGAATATTAAAGCAGGACCTGAAGACATTCGCAGGTTCTTTCATGGCTTACCCATCCCTGAAGGAGGTGTCCATATCACCGGGGGCAAGATGGGTgaagcttttattatattccgtacagagagagctggacagtTGGCCATGCTGTATTCTGGAAAACAGCTCAGAGGGTCGACTGTTACCCTTCATAAAAGCAGCATGGCCGAGTTTAAGCACAATATGGAGTTAAAGTTGAGGAAAAGGAAATGTGCTCCTATGGAAGGTGAACCTGCACCTCAGACAACAACTGCAACAGAGCTTTGCACCACTCTACTGCTGAGTGTAGTGGCTGCTGTCCAAAGACTGCAATCTAACCACGAAATGAACCAAGCCCAGTCACCACCAGTTAGTACCCCTCAATTAATAAATATACCCAAATCGGGTAAGGATGCAATCGAAAAGCTTCCAGAAACCGATCAAACACCACCTGTTAACATCCAGGCAAGGCTTACAGAACCAATGAGACATCATGTGGAGGAGCAACGGGGGGGATTAAGAGAGGGCAACTCTCGCAAACCGGGTTATCTTCGGCTTTACGGACTTCCAAATACAATCACCAAAGAGGAAGTCTGCCAGTTCCTTGAAGGGCTCAAAGTGGTGGATGTAATAACAGATACATTACAAGGGCGGGACCGGTGTTGTCTAGTGAAGATGGCTAGTTTTAAAGATGCTGAAGAGGGCCTGAAATACAGCCATAGTGGCTCGAGGGACTTCCACGTTGAGGTCAGACTGGCCCATGAGAGAATGTGGGAAAACGCCATGGAGCATCGTGAACATTCCCCATGTTCCACATTCTCAGAGCAGGACAGATTCTCCCAGGATAGGCGTTTGCACAGGAATTCTCCAGTTAAAAAGCCCTGCTCCTTTTGGGGATCGCCAAAACGGCGCCGCTCTAACTCTCCATCTTTTGATTCCGAGTACTGCGTCATGGTAAAGAACCTTCCTACAACTATTACCAAGACTGAGATAAGGAACCTGTTCTCATGTCCTGACATACCAAACAGTAAAATCTTGCATCTACTAAACAAGTGGAAGGAACGAACATCTACTgcctttataatatttacacagcCAGAGGAATATACCTTAGCCATGAACATGAACGGTAGTGCCATTGGCTCACAAATAATAGACGTCTCATCCATTACTAAGGAAAAAATGAAGGACCTAATGTATCAAAACACATGTACTGAATCAGAAAGGTCACGGTCTTGCAGCGCACAAACTCGGCCTGGCCTGTCTTGCATCTACGCGCGGAATTTCCCTGCTGCCGTGAGGAAAGCAGAAGTGAAAGACTTTTTTAGTATGTATAACATCAGTGAAGAGAACATCAAGTTGCTTGAAGATGAAAATGGCAATGGGATTGGTGAGGCTGTTATTCAGTTTGGAAGTGAGGAACGTGCCAGAGAGGCTTGTAGTCTACATAGAGAGCGCTTCAGGCGAGAACAAATTCTGCTTACCTGTATTTCATCACAACAAATGAAAGACATCTTGCACAAAACCCAATGAGCTCACATTTTGGGTAGTGCTTGCTTACGCTAAGGGGAAATGGGGTGTACCTTTTAAGACATTCCACAAAATATGAAGGAGGATGGTGGAAATCCTTCagccattcattttttttttttttttacagggcAGAAAGTACTCACATTACCaacaaaaatgaacatgaaactCAAAAATTACTCTGGGACTCATTTAAATATCAAAGAAAGTACAAAATGTGCATTGCATGGACTGTAACATTCTTCTGGTACATCTGAAATCTTTAATGATGACTGGTATTGTTCTAGTATCATGTGATGTAACATTTCTTAACTGCTATTGAAAAGGCAATcaatatatctgtatattacTGTTTGCACAATAAACCAAGTCATATTAAATCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU388835 lncRNA upstream 75738 7045046 ~ 7045278 (+) True G328222
TU388815 lncRNA upstream 91615 7023155 ~ 7029401 (+) True G328208
TU388766 lncRNA upstream 159640 6949559 ~ 6961376 (+) True G328161
TU388624 lncRNA upstream 412237 6648280 ~ 6708779 (+) True G328024
TU387927 lncRNA upstream 1278578 5842219 ~ 5842438 (+) True G327391
TU388878 lncRNA downstream 4775 7128166 ~ 7136722 (+) True G328260
TU388910 lncRNA downstream 122939 7246330 ~ 7247279 (+) False erp44
TU388944 lncRNA downstream 144343 7267734 ~ 7268762 (+) False G328313
TU388945 lncRNA downstream 144343 7267734 ~ 7268762 (+) True G328313
TU389077 lncRNA downstream 249889 7373280 ~ 7373500 (+) True G328427
XM_034298248.1 mRNA upstream 55867 7050652 ~ 7065149 (+) False nacad
XM_026924799.2 mRNA upstream 55867 7050653 ~ 7065149 (+) True nacad
XM_026924800.2 mRNA upstream 55867 7050653 ~ 7065149 (+) False nacad
XM_034298057.1 mRNA upstream 77346 7029781 ~ 7043670 (+) True tbrg4
XM_034298058.1 mRNA upstream 78199 7029958 ~ 7042817 (+) False tbrg4
XM_034297851.1 mRNA downstream 30432 7153823 ~ 7185065 (+) True tex10
XM_034297850.1 mRNA downstream 30785 7154176 ~ 7185065 (+) False tex10
XM_026924803.2 mRNA downstream 100631 7224022 ~ 7246368 (+) True erp44
XM_026924804.2 mRNA downstream 100631 7224022 ~ 7246368 (+) False erp44
XM_026924704.2 mRNA downstream 263189 7386580 ~ 7390884 (+) True alg2
TU387482 other upstream 1782765 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 2190862 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 2197335 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 3107478 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 4551277 2565700 ~ 2569739 (+) False G325435
TU389428 other downstream 778401 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 1264796 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 1491682 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 1645354 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 1645355 8768746 ~ 8819267 (+) False LOC113532648

Expression Profile