RNA id: XM_026924609.2


Basic Information

Item Value
RNA id XM_026924609.2
length 5422
RNA type mRNA
GC content 0.46
exon number 17
gene id mtmr11
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2059540 ~ 2091481 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAATAAAGGACATAAAGCACAACAAAGCGCCCTGCGGTCTGTAGCACAGCCTGCGCTGGCTCTTTATGATCTCACTTCACTGAAGATTGATTCCTGACACAGAGGCATGTTGTGCTTTTTAGTCAGAGAGTAATAAAGTTAGCAGTGTGAGCTTTATGCGTGCCGACCTGCTGCGTTCCGCTCGCGCCGTATTtcacagaggaggaggaggaggagagtaAGAGGAGGACCGGATAATGAACCAGAGCGGTCTTCATGCTCGAGGCAGAGACATGTTCGGTCTGTGCTGTTTACCAGGGGAGTGTGTCCTCCAGAGAGCCGTTCTGGTGAGGAAGAAGCTCTCACCTAAAGAAGGAGGAGGCTGGCTGTCAGGAACGCTGTTCTGCACCCATTTCCGGGTGGCCTTTGTGCCTCAGGACAGCCCGAGACCAGACGACAATGCCGATCCTGTGCTCCTTGGAGACCATGACGTCGCTTTGGCCTCCATTGAGAAGGTTGTTGCCGTGGGACCATCCCGGACTAAACTGGTAACCTCTAACTCCTCTCTGAAGTTCACTCCTGAGGAGCTGGTGCTGTACTGCAGAGACCTGCGCGTCCTCTGCTTCCTGTTTGACAGACTCACTCCTGACACTCAGGCTGTGGAGATTACGTACACCATCGCCAAGACATACCAGCCGCTGAAACCCAGCACCATCCTGTCCTTCCAGAACGCAGCTTTGGGAAGTATCGAAATGAAACAGTTCCTGAGCAACCGGAGGCGTGACCCGAGCATGAACTGGTACGAGAGCGCAGCGGACTGGGAGCAGGAGCTGGAGAGGACCGGAGCCACCGGCTGGAGGGTCAGCGCCGTCAACGACCGCTTCGAAATGTCCACCAGCCTGTCCAGGTTTAACGTGGTTCCTCAGAAGGTCCTCGACACTGAGCTGAAGAAAACATTCGCCCATTTTAACGACGGTCGCATCCCACGCTGGTGTTGGCGGCATCCGCGCGGCAGTGACCTGCTGCGCATGGCCAGCTTTCAGAACAACATCTATCACGAGAAGGACGATATCCGGAACCTGGAGCTGATCCTGTTCGGTGGCCAGACGCAGTGTGTGGTTATGGATCTCGGGGATGAAATGCCTTCGCCAGCGGATGTGCAGCTCGCACACACACGACTGCGCTCCCTGTGCCTCGGAGATATTTCTTCCTCCATGTCTGTGCCGGATGATAAGTGGCTTTCCACTCTGGAGGGAACTCACTGGCTGGATTACACCAGgtgctGTCTAAGAAAAGCTGCAGAAGTGTCCTGCTTGCTCCAAAAAGGGCAATTAACCGTCGTTCTGCAAGAGCCAGAGGACCGGGACATGAACTGCGTGGTGTCCAGTCTGGTGCAGGTGATGTGTGACCCGCACTGCCGCACCATCGCTGGCTTTCAGAGCCTCGTGCAGAAGGAGTGGGTGATGGCGGGGCACCGGTTCCTCAGCCGCATCAACTACCACCGAGACACCGACAAAGAGGAGGCTCCAATCTTCCTGCTCTTCCTGGACTGTGTGTGGCAGCTGTGGGCTCAGTTTCCAGCCCGTTTCCAGCTGACTGAAGCCTACCTGCTGGCCCTGCATGACAGCGTGCAGCTGCCACTGTTCAGCACCTTCCTGGCCAACTGTCAGAGAGAGCGATGTCGCCgatcacagCATTTGTCCCCGAGCTACACTCCAGTAAACGGGCTGAGAGAGTTACCCAGAGGCTCGGCCGAGGAGCCGGTGGACCCTCCGTACCCCCCCGTGTGGGACTGGGCCCTGCAGTACAGCAGTCAGAGACGGGCCCTGTTCACCCAGCCCGTGTGCCGACCCGTTTCCCCTGCACCTGTCCTCAACGGCAACCTCAACACCAACCTGGAGCCAGAGTGGAGTGACAGCGCCGTAGGATCAGTGTTCTTGCTCTCGCGTGGTGTCTTTTCCTGTCCTTCCAACCTGCTGCCGTGGAGAAGTGGAGGAGGTTCGGGTTCCTACAAAAAGAGCCACAACAGGGCTCCATCTTGTGAGGGCCTGCCTGCTCTCGAGCGCCTGATCAGAGCCGAACCACTACCCTCCAGCCTCCACGAACCCCACGGGCCTCTGCTGCCCCTGCTCCTGGGGCCCTGCGTGCACATCTGGAGGAACTGCTACCTGAGAGGGGCACTGCATGCGCAGGCTTTCACGTACCCGATGTCGTCTAACACGAGGCACCCGGTGGAACAGCTGGCATGGGAGGTGGAGAACCTGCGAGAACGTTTGGCCCAGGCCTCCACGGGCCGTCCTCAAAACCGCAAGAGACAGGAACACCGCCGCCTCGGCTCCAATCTCAACCAGAACACCAACAACGGCAcattcctcttttcctcttcctcctcttcttcctcttcttcttcctcttcctcctcctcctcctcttcctcctcatcatccAGGAGCTCTCATCAGGAGAGTCCGAGCCGCATTTCAGGACGTTCTGGCTACAGCGACGGACCCAAACACACGTTCCTGTTTGGTCGCCCCACCTCGAGTTCTAGTGCCAAACTGCCCAAGAGTAGCAGCTCACTGGGGCACAAGCCTCGCTGAGCTTTAGGTAGGAGAATTAAACCATGCACATGGGATTAAATCTTCTCACAGGACCAAGTGTTAGAAATATTCGCTCTGTTTCACTGAATACAAAGCACTTTCCATAATCAGCACACATCTCAGCCATGTGGTAAAATCTCGGTACTCCGATTAGGGAAAAAGCACAGCATTCCTTTATCCTGAGTATTTAATACAAAGTTActtatatgtgtatatagtaCTTAATAGTATATACTACTAGTAGAGTATAGTAGTGTGTAATATACAGTgctttgcaaaagtattcaacccctttGGGCTTTTCCCACATTGTTTTTTGTGTTAGAacatggaactgaaatggactcaTGCATCCCCACTGTGacgcatggtggtggtagcataaTATTTGGCCtaacccttggcctcttggttgtgCCTCTGACCAATCCCCTCTTACTTTTGGTGGACAGCCTCCTTTAGGCAGAGTcgtggttgtgccatattcttttttctttttttttttttttttgaaataatagatttaatgatgttcaaagtttgggatatttttaaaACCCTGATTCATACTTTTCCAGAAATGTCTCCCAGATTGCTTTTTAGTCTTCATGATGCTGCTAGTTTAGGTATATACTCTATCAAGCTCTGGGTTCTTCCAgcacaggtgtatttatattcagatcACAATTGCACATTTCACAGgttaactaattaattatatGACTATTGATAGCAACTAATGTAGCGGTTTTAGATCAATGCAATCACAACTTCTAAGTTTTTatctgtaaataattatattgaTATTTCTCCCAACTTGTTACAGACCATTAAGTATATTTCAGTTCCAGGATAAGTTAAAGGGGGTGAAAATTTATGCAAGGTGCTGTAATAGTGATATTGTAGGTGACTGTAGACGTATTACATTTCAAGCACATTCTCACTCTTTAATGCACAATAGGATGTAAAACGGTCCAAAAAAGATACATACGGCAGAATTTAATCATAATTCCTCATAACAGGAGCATGTGAATTGCGTTAactgtgttattttgttaattgtgttattgtgtaatCCCCCCCCAGTAATTGTCCAGTTCATGCCAAATACCTGCTTCCACTCCtcaaaaaatggataaaagaaaATGGGGATTTTGAGGATTAATGTTCTTTTCATCTCCACTAGATggcgtgtggtgtgtggtgtgtggtgtgtatgcaACTCAATGGTCCATTAGGACTTAACCTAAATAACATTAACAggtgggaggaggaggagaaggtgtgtgtatatacacgaGTTACAatacaaggtgtgtgtgtgtgtgtgtgtgtaatatatatacacatataatgtAGCACTATGATACTTTAGGTCCGGTGTTAACGAAGAAGGAAGACACAAATTTTGCAGcaagtaaattatttataacattccCATCTCTGAGTTATTGGTGACTATTTAAGCCATGTTGTGTGACCAGTTATGGTTTAATGAGAACGAGTCCTATGATCATGCCACAGCTATGAGATGGTGTGTATGGACTGTACGATCAGAGACagaactttcatgctaatatttaattacttgtttatattgtcattttttttatttgtacgtACGTACTGCACAAAACTTTGGTACTTCTTCCACTGCTTCTTTCAGTGTCTGTATGTGACTTTTCACCAGACTTACAAAGacctccatatatatatatgtacagaggattccaaaagtctgagagcaaactgaaaacaagaaataaacaaagaagaGAGGAAATGTTCAATGTCTTAGATATTCAGTATTCTAGActttgcactatttctaggtcactagTTAAGTTTTATGATCTCGATCATGTTAACTTCTTTGTATAAATGGTCAGATTTTGGTCAGATTTTCTTCAAGCCTCTTCCATCGaggatggatttgatctaacacgGCTCCACAGTTCACACCATCTCAAGAcgttaaagcaaaaaggggcgAAACAAATAccaagaaattctgaaattcatgtaaatatgtctAAGGTTCTAATTATAATGTAGtttgaaattgaaaaatgttttattaaattagaaaagaatgcacaaTTGAAGTATTTTCACTAGcactctcagacttttggaccacactgtatatttaaaaaaaaaaaaacatttgtattgatgatgatgatgatgatatggtTATCTAAAATGCTGCCACTGTGTGTACTCAGAAAGATTTCTCACATTTGTTTATCAGTTGTGTTTTATCTGAATTGTTTGAGCTGTATGTGTTGTACTTGAACCAGAAGAAAAGGTACTGGGCGCTGTAATTCTGCATTAACAACGTGTTATAGgatatctaaaatataaaatacacagtGCCCCTGAAATAAGCGTCTGCCTGCGTTTATTTACTGCCACGCCTTTCTCGAAGCAGTTTTATCAGATGCCTGAACGTCTGGCCCACAGACGCAGCTTCCTCTTTGAGGAAATGACAGAGTGCTTGTTCCTCCTAATTGATCTTCCGCGGTCATTTTTCACAGGCTGAAAGGCAGCGAGTGAGTTATTGCAGTCGTATTGTGTGGTGTTCCCACACAGCGAGCTGGTTTGTTTATCCCTGGTGGTACAGGAAGGAGAAActcatttcctctttttccttttactCTGATTTGTATCAGCTTGGCTTGCTCTAGATGAACAAGTCCAGACCTTGGTGactgaaaatgcattttttcatGGATGAATTGATGAAGAATTTGTAGAAATGAAAACTGACAACATGATGAGATTTGTGAcgattttatatttgtatgaaaataaatatttacaccatCACTTTACAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU385253 lncRNA upstream 48587 2020184 ~ 2020388 (+) True G325089
TU385237 lncRNA upstream 56994 1993256 ~ 2011981 (+) False G325076
TU385235 lncRNA upstream 56994 2009334 ~ 2011981 (+) True G325076
XR_004576937.1 lncRNA upstream 67971 2000137 ~ 2001004 (+) True LOC117595767
TU385089 lncRNA upstream 136649 1927080 ~ 1932326 (+) True G324947
TU385460 lncRNA downstream 243398 2334879 ~ 2335106 (+) True G325247
TU385483 lncRNA downstream 305192 2396673 ~ 2396887 (+) True G325268
TU385486 lncRNA downstream 308989 2400470 ~ 2400684 (+) True G325271
TU385672 lncRNA downstream 476498 2567979 ~ 2569739 (+) True G325435
TU385717 lncRNA downstream 552560 2644041 ~ 2647583 (+) True G325462
XM_026924481.2 mRNA upstream 13236 2021415 ~ 2055739 (+) True otud7b
XM_026924482.2 mRNA upstream 13236 2021415 ~ 2055739 (+) False otud7b
XM_026924483.2 mRNA upstream 13236 2043785 ~ 2055739 (+) False otud7b
XM_026923877.2 mRNA upstream 49923 2014611 ~ 2019052 (+) True rbm8a
XM_026924081.2 mRNA upstream 125685 1925582 ~ 1943290 (+) True paqr6
XM_026924599.2 mRNA downstream 13307 2104788 ~ 2139998 (+) True sv2a
XM_026924678.2 mRNA downstream 50711 2142192 ~ 2144525 (+) True bola1
XM_026924812.2 mRNA downstream 77237 2168718 ~ 2183436 (+) True nr2f5
XM_026924910.2 mRNA downstream 113365 2204846 ~ 2215410 (+) True LOC113533074
XM_026924914.2 mRNA downstream 113370 2204851 ~ 2208505 (+) False LOC113533074
TU384187 other upstream 905361 1118268 ~ 1163614 (+) True G324258
XR_004576993.1 other upstream 1058752 957125 ~ 1010223 (+) False cpne4a
XR_004576966.1 other upstream 1262447 774289 ~ 806528 (+) True psmc4
TU384116 other upstream 1320500 745673 ~ 748475 (+) True G324206
TU384064 other upstream 1458966 607612 ~ 610009 (+) False G324161
TU385279 other downstream 51025 2142506 ~ 2144511 (+) False bola1
XR_003403389.2 other downstream 118741 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other downstream 118741 2210222 ~ 2214261 (+) False LOC113533074
TU385671 other downstream 474219 2565700 ~ 2569739 (+) False G325435
TU386582 other downstream 1919929 4011410 ~ 4013538 (+) False hamp

Expression Profile