RNA id: XM_026924620.2


Basic Information

Item Value
RNA id XM_026924620.2
length 2297
RNA type mRNA
GC content 0.43
exon number 12
gene id si:dkey-122a22.2
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5796162 ~ 5905417 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTGACTTGTTTGAGGAAGTTTCCCTGTTCTTCCgcttcactcattcattcacgcTTATTCTCAGGTGAATTTAAGTTTGTGTTGTTCACATGGCGCGCAGGAGAGCAGGTGGCCATGAAACCGCTGGAAATGTTCAGTCTGAGAGAAAGAAGGTGCAGGCAGCAGAAGAGCCTCTTTCTGTGAAACAGCAGCAGGAGAGGAGGAGCTGCTGGACGACTGTGTCATTTTTCGGGAAAATTCTCCTCCTCGTCCTTTTCGTACCACCTTTCCTTAATTATGCCTCGCTTCAGAGAGAAGAACAAGAGCTCAGACCAAGAGATGCACAGTTGATAGATATAGGCTTGGGCCAGAAGATCAGCCTCATCTGCAAAGGCCAAGGAGAACCAGTTGTGATGCTTGACGCTCCAACTGGTATGTCATCTGATATTTGGCATCATGTGCAAGAGAGTGTTTCACAAACCACAAAGGTTTGTGCCTATGACCGAGTGGGCCTGGGCTTTAGCAGGAGAGCTCTGCAGAATGACACTACAGGCATGGAGAAAGTGTGGAGACCATCAACCACTGGAAGGATGGTGGACGACCTCCACCGGTTGGTCAAGGCTGCTGAGATAGCCACGCCCTTCATTCTGGTTGGCTCAGAACTGGGCGCGCTGAACGGCAGGTTTTATACTCACATCTATGACGCGCAAGTGTCGGACTTGGTGCTGATCAATCCCATTCCAGAGGACGTCTTTGAAGAGGAGACGTGGCAGCAGTACTGgtacACACACCTGGTGCCCTCATTACAGATGATGCAGCTCTCTGCAGCCACTGGTGTGAGTCGTCTTCTCCTCATCCTGCGGCTGCTGGAGCCGAGTTTCATTGGAGACAATGTCTCAGGAGAACTGCTCCAACGTCAGAAATACCTCTTGAGTAACCCGGCTCATCAGAGCAGCGCCGTGGACGAGCACTACTTCCTGAACGAGAGCGCGTCTCAAGTCagAGAGATCTCCAAATTCAAGCTGCTATCTAGCAGAATATCATTGAGCGTTATCGTTGGGGACTCATTTGACGAACAGCTCCCTGCTCATCTCAACCAAgtttTTGCTGATGTGCAGAGGAAGTGTTTAAAGCGAGTGTACCCTCAGGCCAAGCTCATTCACATTCAGGGGGCGGACCGTCACATGATCTCTAAAAACGCGTCATCGGAGAAAGACCTCGTGCGAACGAAGAAGAGCCGAGCTACTTTGTGGAAGTGCTGAAATACAGTCACGCCATTTCAGCATTGCAGTCATATCttaatgaaaacagaaacaaatctcactctgtctctctctctcttgctgggAGACAACAAAGTGTTGAGGGACGGACAGAAGGGGGAGGATAATTAAACTGGCCTGAAGACAGGTattcaaatgtttgtggataAACAGCGCAGGACTTTAATAGTTTGCTGTAAAACTTGTAGTTAGGCGCATCAGCTTTTGTTTCATCCATCTGTCCCGACAAATGACTGCAGCAGAAGCTGGAACAGGGGCccaaacaccacaacacacaaatataaactcTGTTTACTGCCTCTGTTCTAGAAATTATGTAACTCTTAACTTCATGAATAAATTGTAAGCAATGGTAAGAAAATAACAATGTACATTAACTGACATGTagtttaaatgttaacaaaataCACCTGAACTGGCTGTTTATCCAAttcatgactaaaaataatccAGATAAATTTGcaataattaaattacagtGTGTCCCTAATGTTGATGAACTCTGGTGAAATGGTCCTGAACTCTGGTGAAAAACATGCTTTTCAGCTTCACTTCTTAATTTTGCCACTCACAGTTTAATTAAcaacatgttcattaatataCTGGTGTAATTTTACTCACTAATGGTATGAACATTGGTTAAGGCAGGCATTGATTATTTGCCCATATGCTTTATTAATTGCTAATGGTACTGATGCTTTGTTGATGTTAATTAATGCCAGTTATGGGAACTGTAATATAAAGTGTTACCTgcatttaatactttttaaagcTCCCTTTTAATCCGTTTTCAGATTTGGTGATATTTTGTGCAGACATGCTTCAATAACATCACTGTGATCTTTAAGACAAATAATCTGGAGTATTTCCGTcaactttttgtccattttttgttCCTTTGTCAACTTCCTTCATATCTACTTGTATTATTGCAGACAAAAAGCATCACACAATTTTACGTTCATATAGTCAGGTTTATTCTGGTGTTCTGTCTGTGAGATCTGAATTTGGTAaataaacgtttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387696 lncRNA upstream 189063 5605870 ~ 5607099 (+) True G327178
TU387573 lncRNA upstream 254273 5541358 ~ 5541889 (+) True G327071
TU387473 lncRNA upstream 481573 5311231 ~ 5314589 (+) False acbd7
TU386838 lncRNA upstream 766372 5019782 ~ 5029790 (+) True G326462
TU386818 lncRNA upstream 806846 4985490 ~ 4989316 (+) False klf10
TU387927 lncRNA downstream 3889 5842219 ~ 5842438 (+) True G327391
TU388624 lncRNA downstream 809950 6648280 ~ 6708779 (+) True G328024
TU388766 lncRNA downstream 1111229 6949559 ~ 6961376 (+) True G328161
TU388815 lncRNA downstream 1184825 7023155 ~ 7029401 (+) True G328208
TU388835 lncRNA downstream 1206716 7045046 ~ 7045278 (+) True G328222
XM_026924676.2 mRNA upstream 193149 5593849 ~ 5603013 (+) True sqlea
XM_026924003.2 mRNA upstream 204429 5584416 ~ 5591733 (+) True LOC113532582
XM_034297883.1 mRNA upstream 204429 5584887 ~ 5591733 (+) False LOC113532582
XM_026923902.2 mRNA upstream 213135 5565646 ~ 5583027 (+) True rnf144b
XM_026923952.2 mRNA upstream 242858 5550225 ~ 5553304 (+) True ccdc127a
XM_026924312.2 mRNA downstream 227803 6066133 ~ 6084254 (+) True dpys
XM_034298203.1 mRNA downstream 466251 6304581 ~ 6312558 (+) True zgc:101716
XM_026924697.2 mRNA downstream 480757 6319087 ~ 6326360 (+) True upk1a
XM_026924097.2 mRNA downstream 816445 6654775 ~ 6759822 (+) True LOC113532640
XM_026924098.2 mRNA downstream 816445 6654775 ~ 6759822 (+) False LOC113532640
TU387482 other upstream 457911 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 866008 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 872481 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 1782624 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 3226423 2565700 ~ 2569739 (+) False G325435
TU389428 other downstream 2063462 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 2549857 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 2776743 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 2930415 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 2930416 8768746 ~ 8819267 (+) False LOC113532648

Expression Profile