RNA id: XM_026924627.2


Basic Information

Item Value
RNA id XM_026924627.2
length 3740
RNA type mRNA
GC content 0.55
exon number 11
gene id mios
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2568991 ~ 2581023 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGAACTGTATTTTTGTACATGGTGTAACAGTAGAAGTCTGTGTTCCTCGACTTTGGGGGCGAGGGCTTCCTCAACGGAACATCATGCTGCCAGAAACGGAGGAGGACATGGAAAGAActtgaaagaaacaaaacatcGTGTCTCGGCTCTTCATGGAGGAGCAGAAAGCCATAAATCTACACTGAGCGACTGTGGGCAGAGAACTGGGATTTCAAGCACAACAGAGTaactgtgtcccaaaccacatcattttcactatgtagtgcactagttAGTGCCATTCCTTTCTTCTAATCACGGACGATCCTGAAGGTGTTATACCTGTGCATCTAGCTGACTTCACTAAACCCAGCATGTGAGATGAAGGAGAAATGAGAAACCACTAAACGCGCTCCTCTTATACAAAGCATCGGCCACTGAACGTTCCTGTCATGATGAGCGCTTCCAAGCCGGACATCCTGTGGTCGCCGCATCACGCCGACCGCTTTGTTATCTGCGACTCTGAGCTGAGTCTGTACCGAATCGGCGCTGTCGGCACCTCAGAGGCTAAAGCTGGCGCGCTGCCTTTATCCGAGGAGACGGCGGCGACGCTGCTGGCCATTAACTCCGACACGCCGTATATGAAATGCGTAGCCTGGTACCCGAAGCACGAGCCGGAGTGTTTGCTCGCTGTGGGCCAGGCTAACGGTCGAGTGGTGCTCACTAGCCTCGGACAGAGCCACAACTCCAAATGCAAGGATCTGATGGGGAAGGAGTTTGTACCTAAGCATGCACGGCAGTGTAATACGTTGGCGTGGAACCCAGTGGACAGCAACTGGCTTGCTGCGGGACTGGATAAGCATCGAGCTGATTTCTCCGTTCTGATTTGGGACATCAGTAGTAAATATTCTCCCGAAGCCATACCGGCTGAGAAGCTCCGTCTTTCTGGAGATGCCGATTCTGGCATGGTGGTGACAAAACCACTGTATGAGCTTGGACAAAACGATGCGTGTTTATCTCTTTGCTGGCTGCCTCGTGACCACCCGAAGCTTTTGCTCGCCGGAATGCATCGCAACTTGGCCATTTTTGACTTGCGCAACACCAGCCAGAAGACCTTCGTCAACACCAAAGTCGTACAAGGCGTTGCGGTGGATCCGCACTTCCCTGAGCGTGTGGCGTCCTTCTTCGAGGGTCAGGTGGCCATCTGGGACCTGCGGCGCTTTGAGAAGCCAGCGTTTACACTCCCTGAGCAAGCCAAGCCGCTCACCAAAGTGGCATGGTGTCCGACACGCACCGGTCTTCTGGCTACGCTGACACGTGACGCCAACGTTGTGCGCCTCTACGACATGCAGCACGCCCCCACAGGGCCCGTCGGCTCAGACGAAAGCGAGCCCACGGTGATCGAACGAGGTGTGCAACCGGGCGGTGGCGCTGACGGCGTCATCAGCAGCTTCGCCTGGCACCCGTCTGCCCAAAAccgcatggtggtggtagcacccAATCGCGCCATGAGTGACTTTACTGTGTTCGAGCGCATCTCGCTGGCATGGAGCTCCACCACGGACCTTGTCTGGGCGTGCGGACGCCACCTATACGAGTGCGCTGAAGACGTCAGAGACGGCGGCACCGCTGAGAAAGACATCGCCACTAAAATGAGGGAGCGTGCTCAGTCGCGCTACGGCCATGACACCGTCCAAGTGTGGAGGAACCACCTGCTGGCTGGTGGGAACGACCCCCAGATCAGGTCCCTCTGGTACACTTTGCATTTCATGCAGCAGTACACTGAGGACATGGAGCAGAGACAGCAGGGAAATAAACAGTCTCTGATCTACTCAGGCATCAAGAATATTGTCAAATCCTGCTCTGGCACTACGGAGTTGCGGCGCTGCTGGAAGGGCTCCGAGAGGCCGACAGACGTGGCGCAGTACCACAGCGAGGAGCGCAGCCTGGCTCTGCAGCTGTGCGGCTGGATCAGTCGCGGGCCGGACGTTGACGTCGAGCCCTTTCTCAGGTCTCTGGAGCAGGAGGGAGAGTGGGAGCGAGCCGCCTCTGTGGCCCTCTTCAACCTCGACATCCGCCGGGCCATCCAGATCCTCCATAAAGGAGCTTCGGCAGAGAAAGCTGACCTGAACTTGAACGTGGTGGCCATGGCTCTGTCGGGATACACGGATGAGAAAACATCTCTGTGGAGGGAGATGTGCAGCACGCTGAGACTGCAGCTGAAGAAGCCCTACTTGTGCGCTATGTTCGCCTTCCTCACCAGTGAACCGGGGGCGTACGACGCAGTGCTGTATGAGAGTCGCGTggctgtgagagacagagtggcCTTCGCCTGTATGTTCCTCAACGACAGTCAGCTGTCACGGTACATTGATAAGCTGACCAATGAGATGAAGGAGGCGGGGAACCTGGAGGGCATTCTGCTGACGGGGCTGACGAAGGACGGAGTAGATCTGATGGAGAGCTACGTGGACCGCACAGGAGACGTGCAGACCGCCAGTTTCTGCATGCTCAGGGGCTCGAGTGCTGAAGTGGTGAAGGACGCGCGTGTACAGTGCTGGATCGAGAACTACCGCAACCTGCTGGACGCCTGGAGGTTCTGGCACAAACGGGCCGAATTTGACATCCACAGGAGCAAACTGGACCCCAGCTCTAAGCCTCTCGCTCAGGTGTTTGTGAGCTGTAACTTCTGCGGGAAGTCCATATCGTTCAGCTGCTCCACCGTGCCCCACCAGGGCCGCGGATTCAGCCAGTACGGGGTCAGCGGCTCGCCCACCAAGTCAAAGGTCACCAGCTGTCCTGGCTGCCGAAAACCGCTGCCACGCTGCGCCCTCTGCCTCATGAACATGGGAACGCCAGTGTCCTCCTGCATAGGTACGGGAAAGTCTGACGAAGAGTCGACCTCCCGAGAGATAAGAAGCTCGCTCAGTTCAACAACTGGTTCACGTGGTGCCACAACTGTCGCCATGGAGGCCACGCTGGTCACATGCTTAGCTGGTTCAGAGACCACAGCGAGTGCCCGGTTTCAGCGTGCACGTGTAAATGCATGCAGCTAGACACGACGGGTAACCTGGTGCCCTCAGACAAGGTGTAGCCCTGCAGTGGTCCAGTCCTGCAGCCTGAGCAAGCGCATCTACACCAGGATTCAGTTCCTGCTGATGCCCCGACCGTGCTACGTCTACCTCCTCACTTCAAGATGAACTGACCTAGTCAtacagactaaacactgcatacgTGAAAGCACGCTAACATAAAAAACCCactgggggtgggggtggggaaGGCGTGTCCTAGGACTTGCTAACACATGCTAACAGGTGtctgttttcctgcttctacAGACTGTTTGTAACAGTTTTATCACCTGTATATAAAGTCCAGTTTTGAGCAAGAGTTCAGCTCAATTGAGTGTCTTCCATCACCTTGTGCATTGCTTGTCCTCGCTGTCTGTAGAAGCTTGTGTGGAGGCAGCAGTCACTTGTAGAGTCAGGCAGCTGTGTGCTCGTCTCTGGGCGTACTGGACTCACTGAGTGCCATGCAGGGCTTCAGCACCGCCTCAGATAAAGGCTGCTGTGCTTTCAGAGTGCTGCACTGGGTCACGTGGGGGCACGGTCTGATTTTTCAGCTCTTCACTGGGCTTCTCTGCAGGGGTGCTGCACCAGGTCTCACAAGGGGTAGACTGTATTTTCCCCACCTCGCTGGGCGAATCAAAATGACCAGCAGACatttcctattaaaaaaaaaaaaaaaaaaattagtt

Function

GO: NA

KEGG:

id description
K20407 MIOS, MIO; WD repeat-containing protein mio

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU385609 lncRNA downstream 168401 2400317 ~ 2400590 (-) True G325373
TU385602 lncRNA downstream 181433 2387309 ~ 2387558 (-) True G325366
TU385578 lncRNA downstream 196189 2348305 ~ 2372802 (-) True G325343
TU385576 lncRNA downstream 219409 2348305 ~ 2349582 (-) False G325343
TU385591 lncRNA downstream 234340 2334452 ~ 2334651 (-) True G325356
TU385878 lncRNA upstream 16256 2597279 ~ 2598579 (-) True G325616
TU386067 lncRNA upstream 594737 3175760 ~ 3240764 (-) True G325774
TU386072 lncRNA upstream 613820 3194843 ~ 3214451 (-) True G325778
TU386073 lncRNA upstream 618204 3199227 ~ 3201250 (-) True G325779
TU386074 lncRNA upstream 628183 3209206 ~ 3237328 (-) True G325780
XM_026924684.2 mRNA downstream 152585 2411801 ~ 2416406 (-) True zmp:0000000881
XM_026924671.2 mRNA downstream 159649 2405670 ~ 2409342 (-) True LOC113532929
XM_026923950.2 mRNA downstream 184588 2377478 ~ 2384403 (-) True mex3a
XM_026924442.2 mRNA downstream 229047 2335473 ~ 2339944 (-) False si:dkey-152b24.7
XM_026924425.2 mRNA upstream 26679 2607702 ~ 2611312 (-) False LOC113532793
XM_026924424.2 mRNA upstream 26679 2607702 ~ 2611312 (-) True LOC113532793
XM_026923901.2 mRNA upstream 35401 2616424 ~ 2626415 (-) True si:dkey-256h2.1
XM_034297893.1 mRNA upstream 46628 2627651 ~ 2647474 (-) True sept7b
XM_034297891.1 mRNA upstream 48995 2630018 ~ 2647474 (-) False sept7b
TU385328 other downstream 471556 2088259 ~ 2097435 (-) True G325145
TU384835 other downstream 1118275 1429932 ~ 1450716 (-) False kif13a
TU384829 other downstream 1197962 1370476 ~ 1371029 (-) True G324748
XR_004576952.1 other downstream 1466874 1047583 ~ 1102117 (-) True nek11
TU384611 other downstream 1841357 726627 ~ 727634 (-) True G324579
TU386070 other upstream 656678 3237701 ~ 3239147 (-) False LOC113532533
TU387191 other upstream 2382594 4963617 ~ 4977453 (-) False ubr5
TU387192 other upstream 2382594 4963617 ~ 4977527 (-) False ubr5
XR_003403372.2 other upstream 3248451 5829474 ~ 5978379 (-) False zfpm2a
TU388042 other upstream 3295073 5876096 ~ 5978268 (-) False zfpm2a

Expression Profile