RNA id: XM_026924633.2


Basic Information

Item Value
RNA id XM_026924633.2
length 5420
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC113532914
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5514842 ~ 5522545 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAAAAACTTTGAACGTTTTATGACCTTTTTTGAAGTCGCGGCGGGGAGTCGCCTGGCGATGACGTAAACACGTAACACTGACAGCGGAGACGcctgattattaaaaaaaactggcatTAAAATGAGGCTCAAATTATCGCCGCGTTTGATTATCAAATGGTGTGCTTTTGTTAGGGTTTGTACACTCGGTTGCAGATGAACAGACATCAAGGCGTGCTACGGAATTGTATTTCGTGTCGCCCTGCATCTATCGCATAGCTAACATCCAGCGTTTTAGACTGCGACCGTAGAAAAGCGCTGACCCCGCCGCCGAGGAGCAGCTAGTTAGCTTAGCTTAAGCTTAGTTAGCTTCATTACTGCAGTCTGAACCAGTGAAGCGAAGCGGGCTAGCTTTTAgcattctcaaaaaaaaaaacccttgggCTTGTGCTGAACAGCGAGAGGTCTCCCCGaTGTCATATTGGAGTGGGGCAAACTTTTAGCATGTGAATACAGTTTCTTGCCGCTTCAGAGAGTCTTTGCCATCTCAAAGCCTATCTGGTGCTACAGACACAATGTCGAGCCGAAGGAAGTCCACCACCCCCTGCATGGTGCTTCCATCAGATGTAGTGGAGCAGGATCTGGATATGGAGACCCTTGCAGGGGAAGAAGGAGTCGAAAACACTGCTGAAGGCCCTACAGAAGGCATAGTGGTTCCTTTggacagtgaaggagAGCATGAAGACAGTTTAAGCCATGCTGCAGGAAAACGCCCAAGTCAAACTGCTGTAGAGCAGTCAGTCACAGATCTGACTGCTGAAGGAAATGTTCAGGCTGAGACAGAGGACAGCGAAGACCCTTCCGTCACTGGGATTTCTCTCAGCAAAACTCCTATCATGAAAAAGAAGCCTGAACCCAAAAGAATAGCCGTGTCTCTCAAAGGGGCAGAAGAGGGCGATTCATTAATTGAAAGCGAAGGGGATCCAGAGTCAATGGAAGCATCCTCCATTACAGCAGACATGACAAACCCAATTCTTGGTGATTCCACGAAACCTGGCGTGTTTGTTGGCATTCCCAATCCATCTCCTGCAGAGCAAAAGAAGCCAGTTGTGAACCCTGCTACAGTCCTTCCTGCTGGCCTTGCCCAGGTCCTGTCAGCCTTGCAGGCCCAGCAGAGTGCTCAGGCTCAGCTCCTGATTCCAGTGAGCAGCATTCCGACCTACAATGCGGCCATGGACACGAATGCACTGCTGGTGAACACGTACAAGAAGTTCCCTTACCCATCTGTGTCTGAGATTATGGGCCTGGCAACCCAGACCAAGTTCTCAGAGGAGCAAATAAAGATCTGGTTCTCTGCTCAGCGTTTGAAGCACGGTGTGAGCTGGACGCCAGAGGAAGTTGAAGAGGCTCGAAGGAAACAATTTAATGGCACGGTCCACACGGTGCCCCAGACCATTACAGTCATTCCAGCTCACCATCTCTCTGCCACTAATGGTCTCCAGTCGATCCTTCAGACTTGCCAAATCGTGGGCCAGCCAGGCCTGGTTCTGACGCAGGTTGGCACTGCAAACAGCTTGCCAGGCACCACCCCTATCACACTGACTGTTGCAGGAATGCCAAGTCAGAGCCAGGCATCTAAGATCACGACTAGTCAGACCACCTCTGCCGTTAGTGAAACAAAAAGAGCCACAACGGTCCAGCCACCATCGCTGACTCCTCAGGAGAGCTCTGCCCTCAACGCTGATCACTTTGGCCTGCGCCCAAAGAAGTCAAAGGAGCAGCTGGCTGAGCTGAAAGCCAGCTACATGAAAAACCACTTTGCCAGTGATGCCGAAATCGCCAGGCTGATGAAGCTGACCAACCTCACCAAAGGCGAGATCAAGAAGTGGTTCAGCGATACCCGCTATAATCAACGCAATTCCAAAAACAACCACTTCAGCGTACCCCATGACAGCTCCAGGGCCAACAACAGTAGTGCCACCATTGTTATTGACTCTAGTGATGAGACCCCTCAATCCCCTACACCATCACCTGTCAAAGAGAAGGAGACCCGCAAGACCTGGAACCCATTTCCAGACTTCACTCTGCAGAAGTTTAAGGAGAAGACTCCAGAGCAGTTGGTGATTCTAGAGGAGAGCTATCAAAAATGTGACACCCCCACGGATGAAGAACTGAGTCGCCTGAGGGCCGAAACAAAGCTCACCAGGCGGGAGATTGATGCTTGGTTCACAGAGAAGAGGAAAACTCCTGTCACCGAGTCATCTGAACAAAAGACAGATGAGATGGATGGTAAGCCCTCTCAGAGTAAAGGTAACCAGAGTCCACCTGGAGGAAAAAAGTTGCCCAAGGAAAAGATCACGAAGAAAACTCCGGAACAGCTTCATGTCCTCAAGAGTGCCTTTGTACGCACTCAGTGGCCATCTGCCGAAGAATATGACCAGCTAGCCGAGGAAAGTGGGCTTCCCCGGTCTTACATTGTCAACTGGTTTGGGGATACCAGATATGCCTGGAAGAACGGCAATCTTAAGTGGTACTTCTATTATCAGAGTGGCAACTTAGAGGGTCTGAATGGCAACAAGGGCAGGAAAAGGAGGATTCGAAACCGTGGCTGGGGGAGGTCCCGCAGCAGGAGAGCCAGAAAATCAACAGGTTCAGAGAAGTCCCCACCAATGAAGTTCAAGACAGGGAAAGAGTTTCTTAAGGAATACTACTTGAAGCACAAGTTTTTGAACGAGCAAGATCTGGACGAGCTGGTAGCGAAGTCGAACATGAGTTACGAGCAGGTCAGGGAGTGGTTTGCGGAGGTTGGCAGGAAGGTGGATATGGGCGCAGATCCTTTTGAAGATAACACGGGTAATGAGCAAGAAGAGGAGGAGTCAGAGGGGGAGAACGAGATGACGGTTGAAGAGCAAGGGCCCTCAGCCGCTGGTGATGATGATTGCGATGATGATGACGAGGATGATGAGGATACTGATGATAGTGATTCCTGGGAGCCCCCACAAAGCGTTAGAAAAACCTTGTCAGGGTCTGAGGAACACTGATTCATCAGCTCATTTGCCTTCGGAAATAATCAAGGTTTGTGAAAAAGAGAGTGACTGTGAGGATCCAGTTACAACTTATTGACTAATCCTGCTTGCGCCGCTTTTACGTTTCTCACTTTCTTATTCAAGCTTACTGTTAGTGTTTGTTTAATGAAATTTGCAGACACGAATTGAAAAGCCTGGTTCTGTCGAATTTAAGATCTCTTTCACAAACTCAAGTTATCTCTCAGCTCTGTTCATCTATGAACAGTATTGCACACAAAATGAAGAATCCTGGCCCAGCTAGTCTGTACCTTCAAATGTGCAATTTgactataattaaaaaaaaaaaaaaaaaaggaagaagaccTTTTATTTCAGGATATGggcagaatcttttttttttttaagaaaaaaacaatcctCCCTTTGCCACAAGGAGGATCCATGGTGCCAAAGTTACTTTTTCTGAATGTTACGGTTCCCGGTTTTGTGAAAGAAAATAGCTAATCAAgaaagtatgtgtgtatgtatctagagagagagagagagagagacatgcacaAAAATTTGGGCACTTTTTGTTGGTGTTTAAAAAACCCTGCCTCTTAAGCCATCTAATGGCATCAAGTATGAAAATATGTCTTGTATGAAATCTGTTGGAATTTATTCTACAATAGCAGTAGGCAAAACATATTCAACTTCACTTATTGATCTACTGAGTGTAATATGAAAACGAATACAGCACAACCAGTGAAGATCTGTAGCTCTGATTACCAGGAGGTGCTCTGGTGTCATGTTGGTCGACTTTCGTAGGATTTCGAGTTTCTCCTTGGGAGTCTGAGATGATGGAGAACGGCTGCAGAAGACTGTTAGCGGACTGTTATCAGTGCCTGTACAAAGGAGTGGGActgtgttttttcctcatgcACCGTTTAAACCGGACTCTTTTAAagcccttttttttatttgtggtttGCCAATTCTTAACAAATGGTCGTTTGTATTTCTCATGTGTACCTGAAGCTTAACCCTTATGTTCTGTTTGACCTATTTAAAATTTCTAAGTTGAAAGTTGAACTGATCTCCTTCTTGCCTCAGTTTCTCTAATGAACAgccttttttaaagaaatatttatattacatagaTTCTATTCAGGTCTATTTAGCCTGGGAAAAACCAGCTGGCgttaaagtgttaaatgtaatatttttataaatatcaaaaatcaAATGTGATTTTAGTTAGTTATGGTTCCTTCATCTCTTACCTGGATGCTTTTAGGGGTTTTAAGTGTCCATGTGCATAAATTTTGagtatatttctaataatatatatttaatatgatgTATCCCTTTGCAAAAATGGATTGTTTTGctatataaaatcaaaattcCTTGTTACACTGAACAGAACATGAGGGTTAATGGGGAAAGGGGGCTTTGCTTCACATTTGAAACCCTAAGGCATCTGTTATATAGATAAGGGCCCcactttttaataataactaatatttTTTGGTCAGTTTGATTTTCTGGGAAAAAGACATTAATGATTTCTGTAccctggaattttttttttttttttttttttttgaaaaactgtCCCCTCTTATAATATTGCATGCTGCAGCTGTTGAGAGGATGAGGAAAAAAGATTGCTCATTTTGTACATACGTTTTATGGTTGCATTTTATAAGTCGTTTTAAGCAATTTTATAAGTTTgtatttatgatgatgatgatgatgacaaatCCCTCCTTGGCCTAAGTGGAGTGCTCATATGGTGACCCTTTTGTGTGCTCTGAATTGTTAGTGTGATTTTTAGAAGAGTTTTGCCTAAAACTCCATGTGAATTGTTCTCTTGTTGGTGAACATTATTGCCTGGTGTCCTCCATGTGATTCTGCACTTGTAGTGTATTGTAGACAAGAGATACACGATTATAAGTATTGTCTGAAAAAAGTCACACACCTTTCTGCAACCTAtccataaaaacaaaacaaaacaaaacaaaaaaaatttaagcaaAATCTTTCAtctagattttaaaatgatgcatatgctttttttctttcctgaatGTGTTCTGTGAAGTGCAGCAGTATGTCTGTTGCCTCCTTACATCTGTCACTAGTCATGTTAACAGCAGTACATTTACACATGATCAACTAGAATCACTGTAAGGCTCAGTAAAGCTCATTTAGATCCACAAATATGATCGGGCACCATCATGGAGGTAACTTGTGAAATCATACCGAGCCTTAAAATTGAATCGGTGGCAGAAGCTTTATTTTCCAGAGCCATACGCCTTGTGCAatgcttttaatttaaaactgttttaatagGCTGTGGCTTGATTTAGACAGAAGATATATTTTCTACTTGTTTGAGGATGACAATAAATTTAGATGAAAACccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387604 lncRNA downstream 121260 5392222 ~ 5393582 (-) True G327100
TU387478 lncRNA downstream 200187 5314207 ~ 5314655 (-) True G326995
TU387472 lncRNA downstream 204577 5310049 ~ 5310265 (-) True G326989
TU387455 lncRNA downstream 219610 5294732 ~ 5295232 (-) True G326981
TU387428 lncRNA downstream 257566 5257051 ~ 5257276 (-) True G326960
TU387897 lncRNA upstream 216154 5738537 ~ 5739588 (-) True G327362
TU388044 lncRNA upstream 313687 5836070 ~ 5836306 (-) True G327505
TU388046 lncRNA upstream 315106 5837489 ~ 5837782 (-) True G327507
TU388047 lncRNA upstream 315500 5837883 ~ 5838277 (-) True G327508
TU388102 lncRNA upstream 560983 6083366 ~ 6084649 (-) True G327560
XM_034297800.1 mRNA downstream 2246 5493229 ~ 5512596 (-) True washc5
XM_026924172.2 mRNA downstream 51806 5458233 ~ 5463036 (-) True cldn12
XM_034298176.1 mRNA downstream 113986 5391417 ~ 5400856 (-) False slc25a40
XM_026924319.2 mRNA upstream 410 5522793 ~ 5540977 (-) True LOC113532747
XM_026924320.2 mRNA upstream 410 5522793 ~ 5540976 (-) False LOC113532747
XM_026924321.2 mRNA upstream 18974 5541357 ~ 5546339 (-) True psma2
XM_026924818.2 mRNA upstream 32344 5554727 ~ 5562010 (-) True zmp:0000000930
XM_026924547.2 mRNA upstream 81306 5603689 ~ 5779393 (-) True oxr1a
TU387192 other downstream 537315 4963617 ~ 4977527 (-) False ubr5
TU387191 other downstream 537389 4963617 ~ 4977453 (-) False ubr5
TU386070 other downstream 2275695 3237701 ~ 3239147 (-) False LOC113532533
TU385328 other downstream 3417407 2088259 ~ 2097435 (-) True G325145
TU384835 other downstream 4064126 1429932 ~ 1450716 (-) False kif13a
XR_003403372.2 other upstream 307091 5829474 ~ 5978379 (-) False zfpm2a
TU388042 other upstream 353713 5876096 ~ 5978268 (-) False zfpm2a
trnam-cau_47 other upstream 907477 6429860 ~ 6429932 (-) True trnam-cau_47
TU388974 other upstream 1534411 7056794 ~ 7062428 (-) True G328342
TU389089 other upstream 1856397 7378780 ~ 7386306 (-) False sec61b

Expression Profile