RNA id: XM_026924643.2


Basic Information

Item Value
RNA id XM_026924643.2
length 3948
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC113532920
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8330651 ~ 8334727 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGTACAGGATAATATTCTTACAATAGCACGGATGAACAATATTTTGTCGCCATAGCGAATTAACAGTAGTGGCTCGTGCACCCCTGGAGCGGTTTTAGTGGATCTGTCCCTTTCAGATCAGCAACACGACATGCGCGAGCAATCCGCAGTGActtcctccatcacagacaaACAATAGGAAACATAACATCTTTGAGGATTGTGGTTTTCTTTTGTGCGCGTTAAGAAATCAGCCATAAAAGGAGACGGTTTGGTGGTTGGAGACTGTGGTGCGGGAGGGAAACCCCTGAGTCTCCCCCAATCCGCACAGACATCGATTTGTCTGGAGGGCGTAAGGCGAAGGGTCTGGGAGGTGCTCAGTCAACCCCAAATCTCAACTCATGACTCAGGGTACAGCAATCACTAGCTATTTTCTGCAGTCGATGCGAGGAACGTTTCACGCAGTGAGTGAATCGATCATTTGAACATTTGGGACAATGACGTGTGTTATACCATTGGACGGCATTTTAAGGGCTAAGCCATTCGCTCAAGGTGCAAAACATCCAGGCAGTTTACAGTTTGCAAAAGGCTACATGATTTGTGGAAAGGAATTGAATCATTGTAATCGTCAGTCTTCCGGCGAGCTTCAAGACATGACTGCACACACTCTTAAGGATTTGAATGCATTTAATACAGAGAATAGCGCCATATGCATAAATGTAGGAGGCTTCAAGAGAAGACTTCTCTCTAGCATACTGTCTCGCTTCCCTGAGACGCGACTTGCCCGTTTGCTGCGATGTCAGTCTAAAGAATCTATCCTGGAACTGTGCGATGATTACGATGACGCCGAAAGGGAGTTCTACTTTGATCGAAATCCTGCACTTTTCCCCTATGTTTTGAATTTCTACAACACAGGCCGCTTGCATGTTATGGAAGAGCTCTGCATTTTCTCATTTAGCCAGGAAATTGAATATTGGGGGATCAATGACTTTTTCATTGACTCCTGTTGCAGCAGCACCTACCACTGCAGAAAAATGGAGCCATACCAGGAGGAGTGGGAGGACAAAAGTGATGAGGGAAGCACTACTTCTTCTTTTGATGAGATTTTAGTATTCTATAGTGATGCCACCAAGTTTGACAAGCAACCCCTTGGGAGAATCAGGAGGAAGATTTGGCTGATGTTGGACAATCCTGGCTACTCTCTGTCCAGCCGGGTCATTAGTGTTTTCTCTATCCTGGTGGTGCTGGGCTCCATAGCCACCATGTGCATGAACAGCATGAGTGATTTTGCCACACTGGATAGTGAAGGCCTGCTTCAGGAAGACCCCCGTTTCGAGACAGTGGAGCATTTTGGAATAGGCTGGTTCACATTGGAACTGGTTGTCAGGTTTGTTGTTGCACCAGACCTACTCCATTTCTTTGAGCACCCATTAAATATGATTGACCTGGTGTCCATTCTACCATTTTATCTCACACTACTGATTGATCTGGTGGCTGAGAGGCGCCCCACACTGGAGAACCTGGGACGTGTAGCACAGGTCCTGAGGCTGATGCGGATCTTCAGAATCCTGAAGCTGGCGCGTCATTCCACTGGCCTAAGATCACTTGGAGCAACACTGAAAAACAGCTACAGGGAAGTGGGTCTGCTACTGCTCTATTTAGCAGTGGGGGTGTCATTCTTCTCTGTGATGGCCTATACCattgaaaaagaggaaaatgatgGACTGACTACTATCCCAGCCTGCTGGTGGTGGGCAACAGTCAGCATGACTACAGTGGGCTATGGAGATGTGGTGCCAGGGTCTATTGCAGGAAAACTCACTGCTTCGGCTTGCATCCTTGCTGGCATCTTAGTGGTGGTGCTGCCCATCACACTCATTTTCAACAAGTTCTCTTTGTTTTATAAGAGGCAGAAACAGTTGGAAATCGCCATGAGGAGCTGTGACTTCAGTGGGGACATTAAGGAAGTACCTTCAGTGAACTTGAGGAACTATTATGCGCATAAAGTGAAGTCTCTAATGGCCAGCCTGTCCAACATGAGTCGCAGTTTTCCCAGTGACCACAGCTTGAGTGGGTCACTGCAGTAGCTCAGGGGGATTGACAGCACTCTCATGTATATGGCTCCATCAGAATACATATTCAAATAAGGTGCATCTTGTAGTACAGTTTTATCCTACCAGCAAAACCCACTTATCTGATGTCGACTGTATTTATTGAGTTCAAATGTGTATAGTGATCCAGGATTCTCTGCCTTAGAATTATGATGTTCAGCATGTATTGGAAAAAATATCTCTAAACCAATCAATAACATTTTCATGAGAACAGACAGTATCCACTTGCTAAATGGAATACCGATACAATCCCCATCTACCTTTCAGGAAgtgatttacagaaataatttgtgtatgtgtatgtctggtGGAGTTCTGTACTTGACTGCTGTTAAAGCAAAGTTTAATTAGTGTTGACTGTTGCTGTTGTCACcacatattttactgtttactgtttatatgCTGGAGTATAGTCCTCTTGCAAGTGTTTGTTATGAAGATTTAACAGTGTTCTACAGTGGAAGTGCATTTGCAGTAGGAATAAGTATAAAAAGATATTACCTTAATCCACTGCTCTCTTATGACCAAGGGTGTGTTTTAACTTTATGACTTAAATATCTGACTCCAATATTCAATTAAAGATCTGACTCCAATTTATAATAATTGTTAACTTAATTATCTGACTCCAATTTACTAGGTTAACTTAATGTAACTGATTCCAAACAATAACCTTTTAGTTAGTGCTGGAATTGTAATCTCAAAATACAATTGTACATATAATTTAAACAGCgttataagttttttttatacaagtTTTTACTTGAATTTGACATTGCCATGTCAGAGaagtatatacattttttaagtaATTGTTCTGTTAACTCAGAGGTTTGACTTGTAAGCAAAGGCCTTTCCTATTTACTTGTCAGAGgtctgttttaaatgtgtctaACATACCATTACTCTAAtcaacattatttattcatctctGAACATTCATGTAACACACTACCTTTCAGTAAGAACTGCTGAGTACTTTAAAGATTACACAGTTACAGAGGTTTATTAACTAAAAGAAGAACATACAGAcaaatgtaagaaaataaataacaggtaaaatgtgaaaacttacagaacaaagaaaatgaatggagCCATGTCTGCTAGCATAGGATGCAGATGATAATTGCTTTGGAGAGAGATCAGATGTAAGATTCTCCCTTGAGACAAGATGGCAGGCTCTCTTCCCCAAGATCTTCCTTCCCCCAGAACTAACTTTCATACCCTACTTACACCCCATGCACCTCTTTGAAGGTTATAATGACCAGAGTATGAAATGGAAGcgatataatgtattttatggcAGGATGGATGCCCAGCGTCCTGATCATTTAAATCTGACCAGTCCAGAATCAACTTACTGCCACAGTTTATAAATCTACTACATTGCTTAATCTCatgggtaaaaaaaacaaaatgttataaataatttgttttcaACTTGCTGCTCTCCTGTACCTCACTGATGCTGGCAATGAGATTTGTTTGGTCTAGGACTGTAAGAGGTACACCAGCATGGCTTTGGGTCTGTGACACAGtattgagacaatgacctttgtaaaaagcgctatacaaataaaaatgaattgaaatgaattgaaattgaatagaGCAGCAAGTTTTCCCTAAAATTGTTGAGGTAATATAACAGGACCTAATCCTTTTCAGGGTTATTTCAGGGTAGTGATAACCTGAAAGCTCAAGGCTAAAGAAGTTTTTCATTGATTGGCTGAATGGCATTTAAAGTCAATTAAAATCCCCATTTTTTCTCCAGTTTGGTcatgccaattcccacccactagctaactctcccctatcacacaaaACCAAggacatgcttcctccaagacccGTGAA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04932 KCNS2, KV9.2; potassium voltage-gated channel delayed-rectifier subfamily S member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU389774 lncRNA upstream 66615 8257525 ~ 8264036 (+) True G328995
TU389722 lncRNA upstream 113997 8216446 ~ 8216654 (+) True G328944
TU389478 lncRNA upstream 194488 8135517 ~ 8136163 (+) True G328755
TU389477 lncRNA upstream 195196 8135080 ~ 8135455 (+) True G328754
TU389473 lncRNA upstream 225189 8105262 ~ 8105462 (+) True G328750
TU389833 lncRNA downstream 1625 8336352 ~ 8336582 (+) True G329042
TU389845 lncRNA downstream 40227 8374954 ~ 8378734 (+) False osr2
TU389908 lncRNA downstream 317709 8652436 ~ 8665836 (+) True G329111
TU389928 lncRNA downstream 359676 8694403 ~ 8699160 (+) True G329126
TU390105 lncRNA downstream 414093 8748820 ~ 8749033 (+) True G329288
XM_026924756.2 mRNA upstream 32181 8286243 ~ 8298470 (+) True pop1
XM_034298207.1 mRNA upstream 32181 8286243 ~ 8298470 (+) False pop1
XM_026924479.2 mRNA upstream 61688 8265019 ~ 8268963 (+) True mrpl17
XM_026924062.2 mRNA upstream 79828 8218540 ~ 8250823 (+) True LOC113532619
XM_026924063.2 mRNA upstream 79828 8218540 ~ 8250823 (+) False LOC113532619
XM_026923923.2 mRNA downstream 37958 8372685 ~ 8378896 (+) False osr2
XM_026923922.2 mRNA downstream 40109 8374836 ~ 8378896 (+) True osr2
XM_026923924.2 mRNA downstream 40110 8374837 ~ 8378896 (+) False osr2
XM_034298179.1 mRNA downstream 53460 8388187 ~ 8550238 (+) False LOC113532774
XM_034298177.1 mRNA downstream 53460 8388187 ~ 8550238 (+) True LOC113532774
TU389428 other upstream 428043 7901792 ~ 7902608 (+) False LOC113532663
TU387482 other upstream 2992400 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 3400497 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 3406970 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 4317113 4011410 ~ 4013538 (+) False hamp
XR_004576973.1 other downstream 53460 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 280346 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 434018 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 434019 8768746 ~ 8819267 (+) False LOC113532648
TU390118 other downstream 518601 8853328 ~ 8856276 (+) False bmp6

Expression Profile