RNA id: XM_026924684.2


Basic Information

Item Value
RNA id XM_026924684.2
length 2257
RNA type mRNA
GC content 0.41
exon number 5
gene id zmp:0000000881
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2411801 ~ 2416406 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTGTGGTAAGAAcaatgacacatacacacacacacacacacacaagtaaatgTTTATCAGGCAGAAAGCTTTCAGTCTGAGGAGACTTCTTCATACCGCAACAACTGCTGAGCAAACCTCCATAAAGAGAGATGGACTTTTCTACAAAAACCCTGGCAGAGGGCTGCTTTGGGAAAGTGTATAAGCAAAAGTACGGAGACACCTGGGCCGCAGTGAAGAAAGTGCCCATGAACTTCATCACTAAGGAACAGCTAACCAGAGAGTGCCATGTTTATGAGAAGGCACAACACAACAACGTGGTGAGGCTCCTCGGGAGTCCATGGCTGCAAGACGGAAGGTGGCACATTCCTCTGGAATTCGTCTTTGGAGAGGATCTTGAGACGGCCATATTTAATGTACAGAAATCTAAAATACAGcTGACCCCGTCAGTGAAGGCCACCATCATCAGTGGTATGTGTGAAGGCTTGTACTTTCTGCACAGCAAAGACATCGTCCACCAGGATCTCAAACCAGACAACATCATGATTGAGCATGGATCTCATCGTCCTGTGATCATTGACATGGGTCTGGCAAAATTCTTCAAAAATGGCTTAAGCTCTGCCGTAAACTTGGGCAATGAGGCCTACTCTGCTCCTGAGATCCTGCAAGGGAACATTCGAGACAAGCGTTCAGACGTGTGGGCCATGGGCAAAATCACTGCCGAACTCTGCGCAAGGGTCAGGCTTCCAACCCATGGTGTGACTCCCATTAAGATTAAAGACACTCTGAAAGACAATCCATACTGTAGTGTTGTGTCCAGGATGGTGGTGGCCAATGCAGCAGAGAGAGCCACCATGTTTGCAGTTATTGGAGAGATCCGGAAAATTGGGGCAAATCACGGGGCAGGAGCAGGAAGACCACATGCAGCTTTGGGTGCCATGGGAGCAGGGGCTGCTGATATTGGGGCGAAGCAAAAATGGCGCCCACCGACCCCCTTCCCGCCGGAAGCGAAACACCACGAAATACCTGTTGAACGCCCCCACCATAACCCATCTCCACGACCTCAAcctttagttcctgttaccacaaAGGCATTGGCCAATCAGTTCTCGCAGATGTCCATTCCTTGTCCCTTACCACCAGATGGAATGGTGGTTCATCGTCGTTATGATGACGACTCTGGCCAAATGGAGATTAAACAAATAATCACGAGGAACGGCAAGGTTGTTAAGTATGAGAACTTGAAAATCACCAAGTGAAGTATACAAGAAGAAGTATACAAATGATTTGATCAACTCTCCAGTTTGCTGGGTTGAAGTCTTAAGTATTATATACTTTCAACTTGTGAATGTTGGGTACATCTGGGGGAAAACGTTGATTTTACAAAGTATTTTGAATAATATAGACATCCATTGAAAACAGTGTGCATAACTGGAGCCATCACAAAAGGGGTACACTGTAAAATCACTGGAATGAGTGGAAAGGTTTTCCGAGAGAGTAATGAGAAAAGATTCCAGGTGGTGGATTTAAAATCTTTACGCTTTGGGGATAACGACCAGAGGCAAAAGTGGGAAAAACTTTGATTATAGTCACACCACAGAGCATGATgtcacaaaataaatcatgcaCTGTCTCTGTATATGTTTTCAGAATTATAGCTATACAGAAACAACTTACAATGTGGTGTATGTATATGGTGAATGTGTTTTGCTAAATATTAAATGCGTGTTAATGTACTTCTTGTTTTATAAATTACGTACTTTTGCACAATGGCCTACTGtgtcaatatttttaaaatattaccaaaaaaactttttaatttaCCCAAAATGCCAAAAATACCTTCAGTTCTAATTATAGCATCGAGATCATGATTATCAGAACACTCATCCCTACACGGCACacataatatttacaaaatgatAATCACTAGATATACAGCAGggaaaataagtattcagacacttttgtttttgttatttaatacagttccagtgcatatatccactttacatttacacacacaatgtgttttGACTATGTTCTTTTAAAGACAAAGgaaaatgtatgtatgcataAGCATAGACAaggattgttttaaaaaagtatgttgtttatgtaatatttatgttcTGTCATCATGGACTTTATAGCATTTATACTGTGAAATCTTGATAACCTAGTGATTTATTAAGAGTCTTAACAGTTTCATGAAAATCATGATTTTTCTTTGTATGTTGgttgcaaataaaaacaaaatggcactTATTCATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU385609 lncRNA downstream 11211 2400317 ~ 2400590 (-) True G325373
TU385602 lncRNA downstream 24243 2387309 ~ 2387558 (-) True G325366
TU385578 lncRNA downstream 38999 2348305 ~ 2372802 (-) True G325343
TU385576 lncRNA downstream 62219 2348305 ~ 2349582 (-) False G325343
TU385591 lncRNA downstream 77150 2334452 ~ 2334651 (-) True G325356
TU385878 lncRNA upstream 180873 2597279 ~ 2598579 (-) True G325616
TU386067 lncRNA upstream 759354 3175760 ~ 3240764 (-) True G325774
TU386072 lncRNA upstream 778437 3194843 ~ 3214451 (-) True G325778
TU386073 lncRNA upstream 782821 3199227 ~ 3201250 (-) True G325779
TU386074 lncRNA upstream 792800 3209206 ~ 3237328 (-) True G325780
XM_026924671.2 mRNA downstream 2459 2405670 ~ 2409342 (-) True LOC113532929
XM_026923950.2 mRNA downstream 27398 2377478 ~ 2384403 (-) True mex3a
XM_034298047.1 mRNA downstream 71818 2335473 ~ 2339983 (-) True si:dkey-152b24.7
XM_026924627.2 mRNA upstream 152585 2568991 ~ 2581023 (-) True mios
XM_026924626.2 mRNA upstream 152585 2568991 ~ 2579474 (-) False mios
XM_034298160.1 mRNA upstream 152585 2568991 ~ 2579474 (-) False mios
XM_026924425.2 mRNA upstream 191296 2607702 ~ 2611312 (-) False LOC113532793
XM_026924424.2 mRNA upstream 191296 2607702 ~ 2611312 (-) True LOC113532793
TU385328 other downstream 314366 2088259 ~ 2097435 (-) True G325145
TU384835 other downstream 961085 1429932 ~ 1450716 (-) False kif13a
TU384829 other downstream 1040772 1370476 ~ 1371029 (-) True G324748
XR_004576952.1 other downstream 1309684 1047583 ~ 1102117 (-) True nek11
TU384611 other downstream 1684167 726627 ~ 727634 (-) True G324579
TU386070 other upstream 821295 3237701 ~ 3239147 (-) False LOC113532533
TU387191 other upstream 2547211 4963617 ~ 4977453 (-) False ubr5
TU387192 other upstream 2547211 4963617 ~ 4977527 (-) False ubr5
XR_003403372.2 other upstream 3413068 5829474 ~ 5978379 (-) False zfpm2a
TU388042 other upstream 3459690 5876096 ~ 5978268 (-) False zfpm2a

Expression Profile