RNA id: XM_026924687.2


Basic Information

Item Value
RNA id XM_026924687.2
length 3719
RNA type mRNA
GC content 0.49
exon number 22
gene id ofcc1
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9082979 ~ 9188076 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCCTCCTTCTCAGTTAGATGCACAAGAAGTGGAATCCTCAGAGGGGACaatgcagaggaaaaaaaccatccagtgaggaGAATCAGAGGTGCTGCGTTGGTGTTAGGACATCACGCaaggaaggagagaggaagCCAAAAAGGGTGAGCAGGAGAAAGAACAAGCATGcagAAGTTGGAGCAGAAGGCTCTGAAGCAAGCTAAGCAGAAGAAATCTAAGTCGGCTGAATTTCTGATGGCCAAAgagcaggagctggaggaagaggagagagggatgatGAAGGGCATTGTAAATCCTGTGTTCCTGagtggagaggaggaggacgagCAGAGCTGTGGCAGACAGAGGGATGGGGGAAGAGAAATAGGAGGTGACGGGCAGGATAGCACTCTTGCCGCTCACCAACAGCAAACGAAGCTGGAAGCCCTTGCCGGCACAAGAGGAAATGAAGGTGCTCGAAATTACTTTGACCCCTGGGCGACAGCGGAGGGTGACCTGAGGCAGCGCGGGATGTCCAGGGTTGGAGCGGGAGATGAGCTAGAATTAAAATTCATGCATGAGGACGAACGGGGTCTGTATGAGAAACTGTCTCAGATGCTGAATGAAGATGAAGCTTCAACTGTCATAGATTTGCCTGGCAGTTTTGTGGAAGAAAGACCAGTGGCTGTGGCTCCTAGAGTCCCGCGGGCTGGATGGAGAGATCAAATGAGGGAGAAGttggaggagaggagagaagaggttATCCCCCACTATGTGGAACAACTGAGAGAACATGTACAGGATGACATGATCCCAGTGGGCAGGGCTTCACTGGAGCAGGATGAATGCACGGCGGAGGAGAAGGAGTGGGCGAGAAAACGGAGAGTGATGGCTGTCTTAAGGGGGAATACAAAGGAGTCGTATTCAATTAGAGACATGGAACAAGAGGAAGCTGCTCTGCAGGATCGGCTTTATGCGGCTTTCCAGCGttCAGAGAGACGATTGCTGAATTCACTGCGTCAGCGTCAGGCTGAAGTCATTGCCCAGTATGGAGAAATCACTGAAATCACCGAGCCACTGGGCATCGGATCTGACCTTCCCTggcaggTGGAGTGGACACGAACTCCACAGCCAgtggaggtgtgtgttgtgtgtttacgGGCAGTGAGGGAGAAGCTCAGCAGGGggctgtacagtgtgtgtgtgtccctgcacAGTGGGTTGGGTGGCCCTGCGCTGCGCTGGTCCCGCCTGAAGGAGCAGCAGTGGACGGGAGTCACAGAGCCAGTGGAACATCACGGCCGGATCTGCGACATGGAGCTAATCATTAACCAGAACCTCCATGTGgtcTTGCCTGCATCATGTGACCTCTTGCCCTCCACTGTGCTGATGTTCAGGCTTCTGAGCATGCCCAGTAAGCAATGTGCTGTGAGTGCAGTGGTGGCCTGGGGGGTATTCCCCGTGTGTGACTGCTCTCTAACCCTTATCCAAGGTAGATTTCGCACTCCGCTGCTTCGGGGTTGTCCCAACTCAGCGATAGACCAGTTCAGTAAAATAGagcagctgctctctgctgaCTTGGACAACTGGCTCTGCAACCTTTACTTCCAGGTCAGGAAACTCCAGCAAAGAAGTCAAGGGGTTCCAGAGTGCAATGCCAATGAAGTCACCAATGAAGAGCCTCCTCCTGTTATATCTACTTCTACCTGCTCCTCTACCTCGCTAGCAGGTAAGAGTCCTGCTGGAATCCTCCCCATCTTAGAGCCAGCGTCAGAGCAAGCTAAACCTGGAACACAAAGCAAGGGTGGCAAACAGAACCAGCCATTCAGCAAGATAACCAGCCAAAGTggctgtgagagagaaagagaggtacAGACGAGTATCATCACAGAAGAACTTCAACATTTCTCCTTCTCCctacaGTCTCAGGGAGCTGCTCCACTCTACAATGCTGTGTGTTGTGGTCCAGCCGAGCGGTTGTGTATGGTTTGGCGTATGCTTCCTGCAGAGCTTGATCTATCAGGTAGCCCTCGGCCCACTTTCAGCCAGCTCACACTCCTCGTCACCTTCATCTTTCTCACTTGGTTTCCTCGCCTTTACCTGCACTACTGTGGCCAGTGGCTCTACCTCCATGCTCGAAACGTACCTGTCAACAGGCTTTGCTTCCATGCCCACACGGTGGATTTGGTATATCAGAGCTCTCTCCTGTGCACCCTGGAGGAGCTGCTGCTGGTGTTGTTGGGGCCCTTGACCTTGAATGCAGCTATGTTTCTGCTGCTTCTGATCAGATGGCTCTGTCAGCTAGTGTTTGGCTCAACTCCTTCCTTCCTGTCAAAGCTGATCATGGCTCTGGGAGTGTGGACAGTGCTTGACCCTCTAGCGGTCTTCACTGTGGACGCTGTCCTTGGGCGTCTGTCTTACAGTGCAGAAAAGCCAGTGGCCGACGCCGCTAAGCTTTACTGGCACTTCCATCGTTTGGAGCAGTCAGGCACAGCAGGAATTCTCATCACCCTCTTCCTGTATACCGTCCTCTTCATTCTGTCCTTCACCATGCTCTATATGTACTTCCTCAGgTTCCATAATGATGGCAGAATGCTGGATGTGTACCTTCGTATCCACAGTCCAGAGAGAGCATTTTTTACCCCAGATGATTTTGAACTGTCCAATCAGGAGCTTAGCTACATTGTAAAGAAGGCGGAGCAATGGAGAGGTTTCAATGGGGAGAGACGAAAGGTGGCAGTGTATGATTACATCTGGACCCAGGAGGAGTCTGGAGGGTGCGTATCCCCTGGGGCTGTACCCACTGTAGTGGGAGAGACGAGCACCCATGTGTCCATCTACACCCTGTACCTGAGCGGCCTGCGTCAGCGCTACAGACACTTCCTCAGGCAGCCTAGTGGAGCCATCGTAGAGCTCATTGGGGATTTGGACGGTGCAGCTGCTCATCAGAATGTCCAGTGTCAGAAGACAGGGCAGAAGGAAGTCGACAGGAGGATGAGGAGCTCAACACATGCACTCAGAGAAAGGAAGAGCAAGAATCCTGTATGGCgctgtAACAGGGTGGGACCTCTCAGTGGGAGTGCCTGTGAGCCCAACACAACAGTGAAGGATCACTGAAGCTAAAGTTGCTTACAGGAGCTAAAGCCACATGAGAATCTAAGTGAAAAgtcctacatgtgaaaaatgtgaaaagtctCAAATACAAAATCAGGTGACACAACAGCATCTTTAGCAATATTCTACTCCTAAACCTGATTATCAGCTTAATGTTCAAGGGTTGCAATGATGGATTTGCCCTTATTTATCAAGTTGTGTAAAAACAGGCACCGATTTGAACACACAGTAAGTTGCAGGACATAAAATGAGCTCTGATTTGAGTGCCGTTTATGAATTAGATTCAAATGTGTAGAAACAAGCTCTTGCCCACTAATATAAGATATGCCCCAACATAaccttatatattatatttgatttgCATGAAACTTGCCTTAATTTATGGAGTTGTTGCGCCAGTGAgccaataaaaggaaaatatacaGCAGActacagttatatatatatatataaatccatTCAGTACTAAATAGGTCAGATAAAGCTGAAGtcaaatttaattaaagctgtatatattcatattgGTAAGCCAAATTTCCATCCtgatcaaataaataaacaaatccattATTTATAGAAACAAAACTCTAAAAGAAATTATTCAaaccaaaatgaataaaatcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390202 lncRNA upstream 109392 8973237 ~ 8973587 (+) True G329361
TU390192 lncRNA upstream 137423 8942878 ~ 8945556 (+) True G329354
TU390105 lncRNA upstream 333946 8748820 ~ 8749033 (+) True G329288
TU389928 lncRNA upstream 383819 8694403 ~ 8699160 (+) True G329126
TU389908 lncRNA upstream 417143 8652436 ~ 8665836 (+) True G329111
TU390394 lncRNA downstream 147110 9335186 ~ 9335808 (+) True G329523
TU390393 lncRNA downstream 164074 9352150 ~ 9352733 (+) True G329522
XR_004576957.1 lncRNA downstream 284540 9472616 ~ 9482817 (+) True LOC117595781
TU390448 lncRNA downstream 292263 9480339 ~ 9480553 (+) True G329574
TU390455 lncRNA downstream 303198 9491274 ~ 9491545 (+) True G329581
XM_026923884.2 mRNA upstream 77759 8993786 ~ 9005220 (+) False tfap2a
XM_026923883.2 mRNA upstream 77759 8995767 ~ 9005220 (+) False tfap2a
XM_034298291.1 mRNA upstream 77759 8996872 ~ 9005220 (+) False tfap2a
XM_026923885.2 mRNA upstream 77759 8997097 ~ 9005220 (+) True tfap2a
XM_034298065.1 mRNA upstream 160186 8852464 ~ 8922793 (+) False bmp6
XM_026924663.2 mRNA downstream 145039 9333115 ~ 9349506 (+) False slc35b3
XM_026924664.2 mRNA downstream 145413 9333489 ~ 9349506 (+) True slc35b3
XM_026924966.2 mRNA downstream 212166 9400242 ~ 9415382 (+) True eef1e1
XM_026924967.2 mRNA downstream 212166 9400242 ~ 9415382 (+) False eef1e1
XM_026923980.2 mRNA downstream 250222 9438298 ~ 9451343 (+) False tmem14ca
TU390118 other upstream 226703 8853328 ~ 8856276 (+) False bmp6
XR_004576948.1 other upstream 263712 8768746 ~ 8819267 (+) False LOC113532648
XR_004576949.1 other upstream 267419 8768745 ~ 8815560 (+) False LOC113532648
TU389909 other upstream 417143 8615073 ~ 8665836 (+) False G329111
XR_004576973.1 other upstream 598146 8388187 ~ 8484833 (+) False LOC113532774
TU390686 other downstream 603608 9791684 ~ 9792733 (+) True G329779
TU390970 other downstream 1243257 10431333 ~ 10432864 (+) True G330038
TU390999 other downstream 1407126 10595202 ~ 10678375 (+) False gli3
XR_004576967.1 other downstream 1686133 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other downstream 1686133 10874209 ~ 10984209 (+) False acad11

Expression Profile