RNA id: XM_034297949.1


Basic Information

Item Value
RNA id XM_034297949.1
length 566
RNA type mRNA
GC content 0.55
exon number 4
gene id LOC113532949
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2010189 ~ 2011797 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACATTCAGGAGTGAAGtaaccacaggtttatatcctAGGCAAACCTTGCTCAGTCTGCAGCCATGAAGTTCTCCCTCATCGCCGCCCTCGTCATCGCGCTGGCCATCGgCTCCCAAGCTGCCAGCCTGGTCAAGAGAGAAAGTCCTGAAATGCCTCCTGAGGTTGAAAAGATCGCCAGTTACTTCCAGGACCTCGTCCAAAACCTTAAAGCCCTCGAGGCCCCTGAGCTGGCCAACAAGGCCAAggCTTACATGGAGGAGAGCAGAGCCCAGCTCCAGCCCGTGGTTGAGAAGCTCCAGGAGCAGCTGAAGCCCCTCTCCAGCAACATCGAGGAGCAGATCGAGCCTCTGGCCGCCTCCGTCCGCGCTCAGATCGCCCCCTACACCAACCTGATGCAGAGCCAGATCGAGGACATGCTCAGGTTCGTGGTTGATCAGACCAAGGCCATCCTGCCCCCtcagtaaaaaacaaacaaaacactgaaaaaagccTGATGGGAAATCACCACCGCCCTGTGACTGACATCACTCACCTATCTGAAGCAATAAAGGGGTTGAAAGGCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU385208 lncRNA downstream 61978 1906943 ~ 1948211 (-) True G325056
TU385210 lncRNA downstream 89717 1919271 ~ 1920472 (-) True G325058
TU385155 lncRNA downstream 112008 1897711 ~ 1898181 (-) True G325003
TU385131 lncRNA downstream 262181 1747657 ~ 1748008 (-) True G324980
TU385117 lncRNA downstream 285425 1724010 ~ 1724764 (-) True G324970
TU385254 lncRNA upstream 8441 2020180 ~ 2020405 (-) True G325090
TU385304 lncRNA upstream 43444 2055183 ~ 2140101 (-) False LOC113532493
XR_003403348.2 lncRNA upstream 128248 2139987 ~ 2142077 (-) True LOC113532493
XR_003403392.2 lncRNA upstream 203731 2215470 ~ 2237763 (-) False LOC113533076
TU385540 lncRNA upstream 203744 2215483 ~ 2238076 (-) True LOC113533076
XM_026924079.2 mRNA downstream 33237 1952830 ~ 1976952 (-) False ntrk1
XM_026924078.2 mRNA downstream 33237 1952830 ~ 1976952 (-) True ntrk1
XM_026924432.2 mRNA downstream 246783 1735617 ~ 1763406 (-) False rgl2
XM_026924301.1 mRNA upstream 256271 2268010 ~ 2272046 (-) True tmem176l.1
XM_034298047.1 mRNA upstream 323734 2335473 ~ 2339983 (-) True si:dkey-152b24.7
XM_026924442.2 mRNA upstream 323734 2335473 ~ 2339944 (-) False si:dkey-152b24.7
XM_026924441.2 mRNA upstream 323734 2335473 ~ 2337973 (-) False si:dkey-152b24.7
XM_034298048.1 mRNA upstream 323734 2335473 ~ 2337743 (-) False si:dkey-152b24.7
TU384835 other downstream 559473 1429932 ~ 1450716 (-) False kif13a
TU384829 other downstream 639160 1370476 ~ 1371029 (-) True G324748
XR_004576952.1 other downstream 908072 1047583 ~ 1102117 (-) True nek11
TU384611 other downstream 1282555 726627 ~ 727634 (-) True G324579
TU384506 other downstream 1653568 350738 ~ 356621 (-) False slc4a7
TU385328 other upstream 76520 2088259 ~ 2097435 (-) True G325145
TU386070 other upstream 1225962 3237701 ~ 3239147 (-) False LOC113532533
TU387191 other upstream 2951878 4963617 ~ 4977453 (-) False ubr5
TU387192 other upstream 2951878 4963617 ~ 4977527 (-) False ubr5
XR_003403372.2 other upstream 3817735 5829474 ~ 5978379 (-) False zfpm2a

Expression Profile