RNA id: XM_026924705.2


Basic Information

Item Value
RNA id XM_026924705.2
length 1959
RNA type mRNA
GC content 0.49
exon number 3
gene id alg2
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7386580 ~ 7390884 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGAAAAACTGGTAGACATTTTGGTTCCAGCAGAGCGTAGTTTCCTTTATTTATAGGTGTTTGCAGCTGTTCTGTATTACCTGTATGGATGTTTGAGCCATTATGGCAGCTAGCTAGTTACAGCACGTAGACTAATACAGTAACTGAGGCAGCATGGTGCGAGTGGTCTTTTTGCACCCTGATTTGGGAATAGGAGGTGCCGAGCGGCTGGTGGTGGATGCAGCTGTAGCCCTGCGCTCCCGTGGATGCAGTGTCCAGATCTGGACGGCGCATTATGATTCACAGCACTGCTTCTCAGAAACACTCTCGCCAGACCTGCCCGTGGTGTGTGTTGGCGACTGGTTGCCCACCAGTGTGTGTGGGTACTTCCATGCCATCTGTGCCTACCTGCGCATGATTTATGTAGCTCTCTACCTGGTGTTTCTGAGCGGAGAGGAGTATGACGTGGTTTTCTGTGACCAGGTGTCTGCATGTATTCCTGTCTTGCGTCTGGCACGCCACAGGAAGAAGGTCCTCTTCTACTGCCACTTCCCGGACCAGTTGCTAACAGAGCGGCGTTCTCTGCTCAAGCGTCTCTACCGTGCGCCCATAGACCGACTGGAGGAGTTCACAACCGGCATGGCCGACCTCGTCGTAGTCAACAGCAAATTCACCGCCAACATCTTCAAACAGACCTTCCCCAACCTGGCTGCGATCCAAACAGATGTCCTTTACCCCTCTCTGAACACGTCCTCTTTCGATCAGAAAGTGGGAGACCTTGACGGGCTGATCCCTGAGCACCGGCGCTTCCTTTTTCTCTCAATTAATCGctatgagagaaagaaaaatctgCCGTTAGCATTGCAAGCACTGGCTGCACTGAAGGAGCAGATTTCAACTCGCCATTGGGACCAGGTACACCTGGTTATGGCAGGTGGCTATGACGATCGGGTGGCTGAGAACGTACAGCACTATGCTGAGCTGCGTTCTCTGGCCGCCTCTCTTGGCCTGGAGGAGCACGTCACCTTTCTGCGCTCCTTCTCTGACCACCAGAAGGTGGCACTGCTAAGCAAAAGCACTTGTGTCCTTTACACGCCCAGCGGTGAGCACTTTGGAATCGTACCTGTTGAGGCCATGTACATGCAATGCCCCGTGATTGCCGTAGCCTCTGGAGGACCTCTGGAGTCTGTGGCGGACGGAGAGACAGGCTTCTTGTGCCAGCCCACAGCCGAGAGCTTTGCCGAAGCCATGCAGCGATTTGTGGTTGACCCGGAGCTCAAGCAGCACGTAGGGAAGGCAGGAAGGGAAAGGGTGCTAGGGCGCTTCTCTCTGCAAGCTTTCACCGATCAGCTTTACCAATATGTCATCAGTTTGATCAACTGATCCTTCGACATCCTCCCGTTATTCCACTGACCTGGTGCTGAAAGAGTGCACTCTCTAATTAAAGAAGAGAGCCGTGAACATGTAGGGAATTGACCTGTCAAACACTGGAGATGGAGTGACAGTACAGGACAGAGCCAGAATGTGGACAGCTGCTGACTCAGAGGTTAATGATTTCTACTTTGCTGGACCATCTcagagtgtgtatgtggatgTCTTTTATCCACGAACTAATAGAGAGGTTATGGGACAGAAGTCGATCTTCATGCAGACCTTCAAGTATCCTAGCGTTTGTGCAGTTATATCACTGAAAGATGTTTACAGAGCTGTTATTTTGCTAAGTAGCAGACCTATTAAGATGTTATTACCtctttaatttatatatatggGTTTGGGATTGTTATTGACTGTTTGCTTCCTTGTCAATAATTTGATGAAACTGTTGTCATCATTAAACGAATTGGTGAACAATATTGTGTTTGCTACTTATTAGAGGTGTTAtgtcactatctgtatctgtttattgcTCCAAAATATCTGTATTCCAATTTAAATCCAAAGTGGGCttgatttaaacctgaagtgtgtgttttttttttt

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0097502 mannosylation biological_process
GO:0005634 nucleus cellular_component
GO:0033164 glycolipid 6-alpha-mannosyltransferase activity molecular_function
GO:0004378 GDP-Man molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU389077 lncRNA upstream 13080 7373280 ~ 7373500 (+) True G328427
TU388944 lncRNA upstream 117818 7267734 ~ 7268762 (+) False G328313
TU388945 lncRNA upstream 117818 7267734 ~ 7268762 (+) True G328313
TU388910 lncRNA upstream 139301 7246330 ~ 7247279 (+) False erp44
TU388878 lncRNA upstream 249858 7128166 ~ 7136722 (+) True G328260
TU389095 lncRNA downstream 1357 7392241 ~ 7392448 (+) True G328441
TU389297 lncRNA downstream 266257 7657141 ~ 7659079 (+) True G328620
TU389473 lncRNA downstream 714378 8105262 ~ 8105462 (+) True G328750
TU389477 lncRNA downstream 744196 8135080 ~ 8135455 (+) True G328754
TU389478 lncRNA downstream 744633 8135517 ~ 8136163 (+) True G328755
XM_026924803.2 mRNA upstream 140212 7224022 ~ 7246368 (+) True erp44
XM_026924804.2 mRNA upstream 140212 7224022 ~ 7246368 (+) False erp44
XM_034297851.1 mRNA upstream 201515 7153823 ~ 7185065 (+) True tex10
XM_034297850.1 mRNA upstream 201515 7154176 ~ 7185065 (+) False tex10
XM_026924580.2 mRNA upstream 263189 7121016 ~ 7123391 (+) True rbm12ba
XM_026924642.2 mRNA downstream 26490 7417374 ~ 7424191 (+) True LOC113532919
XM_034298069.1 mRNA downstream 35395 7426279 ~ 7451187 (+) True tmem245
XM_034298070.1 mRNA downstream 35396 7426280 ~ 7451187 (+) False tmem245
XM_026924055.2 mRNA downstream 188105 7578989 ~ 7583831 (+) True ino80c
XM_026924762.2 mRNA downstream 499744 7890628 ~ 7897309 (+) True trim35-28
TU387482 other upstream 2048329 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 2456426 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 2462899 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 3373042 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 4816841 2565700 ~ 2569739 (+) False G325435
TU389428 other downstream 510908 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 997303 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 1224189 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 1377861 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 1377862 8768746 ~ 8819267 (+) False LOC113532648

Expression Profile