RNA id: XM_026924708.2


Basic Information

Item Value
RNA id XM_026924708.2
length 4362
RNA type mRNA
GC content 0.43
exon number 13
gene id tap1
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 3265283 ~ 3278447 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tGTTCACTtcgtgtttggtgtgtgtgtagataagACACCTTTATCTTTCTGCACTCAAAATCGCTTCTAAAACGATTTTAGCTCCttagttgtattttttattttgttatttttattcctgGCGATCGAAGGGAGCACAGGAAGTTAAGCAAGGGCATTACTAGACATTATTAACGCCGTAAAACGCGTCTCACAGTTGTATTTGGGAATGAAGGCCAAGATGGCGGCGTATCTGATTGTCATCCTGCTcctgtgtgtggatgtgtgtgtggtggcgaCGTTTGGGGCGACTCGGCTCTCACCTCTGCTCATTCCTCATTCATTTACCACTCTCTGGGTTGGAGGACTGCTGAGGTTCACTGTCCTTTTCCTTGTCACCTTTCTCTACCCGTCAAGCCCGGCGTGGATGAAGAGCAATAATGTAGTCCAGACCATGGCTGTGCACAGTTTGGTCTATCCAGTGTACGTCTCACTGCTGTGGGCATGCGGCTGGTCAACGCTGGAGCTCACCTGGGGCTGGCACACCTGGCAAGGAcTGCTTCAGTGCTACGCTGTTTCGGCTCTCTCACTGCTGCTGTGGGAACGCTACGTGCCCTCCATCCTCCCAACGACGAAGGTCAAACCCAAGGAGAAAGGCCAGGCCTCTGTGCAGAGGCTGCTGGGATACGTGAAGCCGTACAAGCGTCGGTTCACGGCGGTCCTCCTGTTCGTAGTCGCTTCCTCTCTCGGTGAGATGGCTATTCCGCATTACACGGGTAAAATCACCGACTGGATACTGAAGGAGGACGAACCTGATGCTTTTGCTAACGCCATCAAAATCATGTCGATCCTGACTGTCATGAGCACCGtgtttgagtttgtgtgtgaCCTCATCTACAACACCACCATGAGCCTCATACACACAGCCATCCAGAGTCAGGTGTTCGAGTGTGTGCTGAAGCAGGAAATCGCCTTCTTCGATAAAGCTTCCTCAGGTGAACTTGTGTCCCGAATCACCAAAGACACCAACGACATGAGCGAGTCCCTGAGCGAAGAGCTCAGCCTGCTCATGTGGTACACCATGCGTTTAGTCTTCCTCTACAGCTCCATGATGCTCCTCTCCGTACGCCTGTCCATCTTCACCATCCTCGGCCTTCCCGTCATTTGGATCGTCCCGGAGTTCTCTGGAAGGTTCTACCAGACACATGCAGTCAAAGTGCAGGAGTCTCTTGCCAAATCGAACAGCGTTGCCACTGAGACGTTCTCCGCCATCAAAACAGTGAAAAGCTTCGCCAACGAGGACGGCGAGTCGGAGAGATACAAGAAGTGCTTGGAGCACACCTACTCGCTCAACAAAGTGGAAGCGGCTGGTTATGCGGCATCAACCTGGACCAACAGCATGTCCAGCCTGGCCTTGAAAGTTAGCATCCTGTACTATGGAGGCCAGCTGGTGGCAGGAAATGATGTCACTAGTGGTGATCTGGTGTCTTTCGTGCTGTATGAGCTTCAGTTCAGTCATGCTGTCGAGGCTCTGATGTCCTATTACCCTCGAGTGAAAAAAGCTGTTGGTGCCTCAGAGAAGATCTTTGAGTACGTGGACCGGAAGCCTGATATTCCTCCTGAAGGTTCCTTAGCTCCCAAGACACTCAGGGGTCACGTGCGCTTCAACAACGTCACTTTTGCATATCCGAAGAGGCCAGGCGAGAATGTTCTAAAAGGTGTTTCTCTGGAGCTGAAGCCGGGAGAGGTTACCGCTCTGGTAGGTCCAGCTGATAGCGGAAAAAGCACCATAGTCAGACTGCTTGAGAGGTTTTACCAGCCCCAGGATGGAGAGATCTTTCTGGACGAGCAGCCGCTGCAGAGCTACAAGGATCAATATCTGCATGAGAAGATCAGCGTGGTTGCCCAGGAGCCCGTACTGTTCGCCCGCTCCATCAGAGAGAACATCAAATACGGGAAAGCAGACGCCACTGATGAAGAGATGTACGCTGCTGCTAAACTGGCCAACGCTCACAAATTCATCAGTGACTTTCCAGACGGCTACGACACAGATGCCGGAGAAAAGGGAGGTAAAGTGTCCGGAGGGCAGAAGCAGCGAATAGCCATAGCGAGAGCCCTGATCCGGAATCCACAGGTCCTCATTCTAGATGATTTCACGAGTGAACTGGATGCTGAGAGCGAGCATGTGGTGCAGCAGGCACTGCTGAAGAGGTCGAATGGACGCGCCGTGCTGCTCATTACCAACAAGATGAGCGGCGTGGAGATGGCCAACAGAGTGGTGTTCCTGAGGAGGGGAGAGGTGCTGGAGCAGGGCAGCCATGACGAGCTGCAGAAGACGAATGGCCCGTACGCTGAGTTTCTACGGCTACAGAACACCAGCTTCCATCGTAACGCTCAGGACCACAGCTAAACCTCCAAATCAACGAAGTAATGATGTGTATTTAACACACTGTATAATCCACCTACACCTCAGAACGCACAATTCATTGCAAGGCGATTATAATGTGTTGCATGGTGTACTGCTAcctgtagggaaaaaaatgccaaACACATGAAGGCATAGGCTTTGAAATATAGAATAAATATGCCAGTATTCACAAGATGacataaaatgtttatgaaGGGTGTCTACATAGCACCTTCATAACATCATGCATATACATTTTTTAGGGTATTCATGATGTTTAGatcaacatttacaaaaaaaattatttttgttcaacaaataatacaattaaaaatacaaattatgaATGTGGATCTAAACAGTTATGTATACCTTATGAAGTATTCCTGTAAGAGGTTATAGAgtgaatattattatattgaggATTAGTTTGAGTTCCACAGGAAATGAAGCTTCATAACACTGTTATAAATGCCCATCCCTTTAGAATAACAGTAAAGCAGATGAAcagcaattttatttgtatagcacctctaacaatggacattgccacaaagcagctttacagaaatatataaattcaggatatacattttaaatttataaatttgacAAACATACAGGTAACCACACAGGGCCAATAGGTTTTATGAATGTGGtgtaaaaattcataaaatatataaggaataaaacaattgggattgtgctgttataggaaaataattagtgACAGCGTGGTGGGAACAGAAGTTAtattcttctataacagcatgtcctgaagtgtttcacttcacttcctctcataccacagcaacttgctaATGATTACGTtgtacatcatactttttatctgtttgtagttacatttattgtcgaggaacctccatgaaacaagttcgttcctgttccCTCAGTTTCATCTTGATGATAATAGGACACAAAATGCAGCTAGTTACTGAGAAACTTCAACATGAAACATCCAACATCGTTTCCCTTGGAGAAAAacttacatctgactgttaaccgaagcgctgacactggagacttttcccataaatgttaaataaatgtgtccttaTAGAAAATGCCACCATATTACATGttttcttaatctgtttatgttatatgtatgtattaaacACATAATAGTGAGCAGGGCTGTTTTATTATATGTTGGAATAAAATGGAGGCTTACGATTTAGTCTTTTATATAGACAATATAGACATGATGACagtggaaatgagacaaaaccATCTGGAATATCCATCAGAAACATTTAACTCAGATGTGCTGgtaaattattaagaaaatgCTTCGTACAACGAAAGTAACACTGCTATAACACTTAGCATCGACCACTAACCAAACTTCCATGTAGCCGATAAGTCATTTATACAACGTAAAGGCACAGCGACAGCGGGAACAATACAAAACCAGTCGGGAATGCCATCATTTTCCTCGGATATGGTCAGGAAGTTAGAAATGACTCTCTTCTCTCTGGTAATCTTGGGAATAATGGCATAAGATGCTCATAAATGCTCAAGCATTGCTTTATGGACATGTTATGCATTATTTATAGTCTGTTATAAggtctttattttttcaaacaaCAATATAAATTCTTTGTGCTTCCTTTTGGGTTTTATAGTGCAGTGAAGTGAATCAAGTGACGATAGAGCTAATTGTACTTCATACAACTTATAACGTATGAGTATAACTTAACTCATAACATATATAACTCTCTCCTTGTTGTCATCATGTCCTGATATTTTCTCTACAACtgatgtttttatgtgtttgtacTATGTAAGTGATAGGATTTTTAAATTAGGTGTAAATATCACAACCATAAAGAAAATAGTACAAAAGATCATTTTTCCTCATGACTCCAGCACATGATATAAACATACAACTAGTGAGATTgtgaaaattattattcttgtaaattatcaaaataaaaaaaaaaatgtttcca

Function

GO:

id name namespace
GO:0015833 peptide transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05653 ABCB2, TAP1; ATP-binding cassette, subfamily B (MDR/TAP), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386041 lncRNA upstream 5490 3258929 ~ 3260181 (+) True G325754
TU386009 lncRNA upstream 56709 3139312 ~ 3208962 (+) True G325730
TU385973 lncRNA upstream 193598 3071849 ~ 3072073 (+) True G325697
TU385717 lncRNA upstream 618088 2644041 ~ 2647583 (+) True G325462
TU385672 lncRNA upstream 695932 2567979 ~ 2569739 (+) True G325435
TU386119 lncRNA downstream 41470 3319917 ~ 3322330 (+) True G325815
TU386344 lncRNA downstream 422887 3701334 ~ 3702153 (+) True G326023
TU386457 lncRNA downstream 602230 3880677 ~ 3880941 (+) True G326131
TU386508 lncRNA downstream 666935 3945382 ~ 3946133 (+) True G326178
TU386524 lncRNA downstream 689085 3967532 ~ 3973002 (+) True G326193
XM_026924447.2 mRNA upstream 14311 3240442 ~ 3251360 (+) False pbx2
XM_026924341.2 mRNA downstream 1550 3279997 ~ 3295032 (+) True brd2b
XM_026924045.2 mRNA downstream 23108 3301555 ~ 3304044 (+) True LOC113532608
XM_026924044.2 mRNA downstream 26659 3305106 ~ 3310818 (+) True LOC113532606
XM_026924434.2 mRNA downstream 86674 3365121 ~ 3422994 (+) True LOC113532798
XM_026924435.2 mRNA downstream 136826 3415273 ~ 3422994 (+) False LOC113532798
TU385671 other upstream 695932 2565700 ~ 2569739 (+) False G325435
XR_003403389.2 other upstream 1051372 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other upstream 1051410 2210222 ~ 2214261 (+) False LOC113533074
TU385279 other upstream 1121160 2142506 ~ 2144511 (+) False bola1
TU384187 other upstream 2102057 1118268 ~ 1163614 (+) True G324258
TU386582 other downstream 732963 4011410 ~ 4013538 (+) False hamp
TU386810 other downstream 1642533 4920980 ~ 4923681 (+) True fabp10a
TU386814 other downstream 1646339 4924786 ~ 4930154 (+) True srsf10a
TU387482 other downstream 2053821 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 4623345 7901792 ~ 7902608 (+) False LOC113532663

Expression Profile