RNA id: XM_026924722.2


Basic Information

Item Value
RNA id XM_026924722.2
length 3788
RNA type mRNA
GC content 0.46
exon number 15
gene id esrp1
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8047382 ~ 8065243 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCATAGAGTTTCACACGCGATCGAAAGGCCACGGAGACATAAAGGAACTCAGAGCACTGCTTACCTGCTCTTAGGTGTGGGGGTGACTGGGGGCCCTTACTTCACTGTCACCTGGGGTTTTCTTTGGTATCAGGGTATCGGGttgttgctttatttcttttcttttcttttttttaacttttacttctgtatttttattttaattttttttttaaaaatgacggTTAATCCTGAATACCTGGTGCTGCTATTCACCACGACGTCTGGCGCGAGCGGAGAGCTGTTAGGTTCAGACGAGAAGGAAATCGTTCAGCTGGTGTGGCAGGTCTTGAATTTAAGCACTAAAAAGACCGGTGCAGTGAATGAAGTGCTGGTGAAGCCGGAGAGTGTGGAGCTGACGGAAGAGTGCAGGGAGGAGAGCGGCCTCACTGAGGAGGCCCTTTCAGCTGCTGCTCCTCTGGAACAAGCCCTCAATCAGtttaacCAAAGGTTGCACTCAGAAATAAGCACAAGTTCAGGGAATTCCTTCTGCCTCTGCACGGATGGTCAGCTTCACCTGCGTCAGGTTTTGCATCCGGAGGCTTCCAGCAAGAACATCCCACTACCTGaatgttttttctcattttttgaTCTGCGGAAAGAGTTCAAGAAGCATTTCCCATCTGCGGCTGATCTGAAGGACTTGGATCTTAAGTTTATGGCAGATTACCTGAATGTGAAGGTGGATTCTGGTAATAACTTTACTGCGCTCAAGGTTCATCAGATGTCCAGCATTGCTCTAGCACTCATCTCTGAGCCTGTCTGTCAAATGTTCTCGTGCCCTGAGAAAGTGAATGAGAAGTTTGAAACTGGTACCTGcagcaAGATGGAGCGGATAGATGACAATACTGTGATCAGAGCTCGAGGTCTTCCCTGGCAATCCTCAGACCAGGATGTTGCACGCTTCTTCAGGGGTCTCAACATTGCCAAaggGGGTGCTGCTCTGTGCCTGAATGCTCAAGGCAGAAGGAATGGTGAGGCACTCGTGCGGTTTGAGAGTGAAGAACACCGGGACCTGGCACTGCAGAGACACAAACATCACATGGGCTCAAGATACATTGAGGTTTATAAAGCAACTGGTGAAGACTTCTTAAAGATTgcaggagGCACCTCTAATGAAGTTGCAAAATTCCTGTCACGAGAGAACCAGGTGATCATCCGCATGCGGGGATTACCGTTTACTGCCACAGCTGAGCAGGTGCTGCAGTTCTTCTCTCCATCATGCCCAGTGACGGATGGCACAGAGGGTATACTGTTTGTGCGCTTCCCTGATGGCAGGCCCACCGGGGACGCATTTGTCTTGTTCTCCTGTGACGAGTATGCAGAGAATGCTCTGAAGAAGCACAAGGAAATCCTGGGCAAGAGGTACATCGAGCTGTTCAGGAGCACAGCGGCAGAGGTGCAGCAGGTTTTGAACAGATATTCTTCAGCTCCACTGATTCCGGTGGCGCCCTCACCTATCCTGCCCATAGTGGCCCAGCCTGCATTTGTGCCATCAACAGTTGCTGCCATACCTGGAACGAGGGACTGTCTGAGACTGAGAGGTCTGCCATATGACGCTACTGTTCAAGACATCCTGCTGTTCCTAGGCGAATACACAGCTGATATTAAACCACATGGAGTACACATGGTTCTCAATCAGCAGggcCGTCCATCAGGTGATGCGTTCATCCAGATGCGGTCGGCGGAAAGGGCGCATGCCGCGGCTCAGCGCTGCCACAAGCGCAGCATGAAGGAACGCTATGTGGAGGTATTCGCCTGCTCAGCACAGGAGATGAACGTGGTGCTGATGGGTGGCTCGCTCTCAAGGAGCGGCCTTTCGCCGCCACCATGTAAGTTACGACGTCTCTCTCCTGCATCTTACTCTTTCCCTCCTGCGGGGGCTGTACTTCCTGCTGGAGCAGTGCTTCCTGCAGGGGCAGTCCTTCCTGTGGAGGCAGCAGCTCTCTACCCCTCCCAGTTCCTGTTGAGTCCCCGCCCAATAGCACCAGCTACGTTCTACCCAGCTAACAACCAGATGTACGTAAACTACACAGCCTACTATCCAAGCCCACCAGGCTCTCCACCCAATGTGGGCTACTTCCcggcaagcacacacacacctggctctGTCCTCTCCAGCCCACATGCAGCACTGATCAGGATGCAGGGCCACACCTCCACTCATACCTATAGCACCGGAGTAAAGGAAATCCTCAGCATGGTGCAGGCTTATCAGccCAGCAACAGTGAAGCCTTGGTTACTCTGCCCCCCCTGCTCTCAGCCAAACAACCTATTGCAGATCAGAGCCTCGGAGGAGGAGCCTATCTGGACTTGCAGTTGATATAGACTGTGCCAGTCGTGAAGCCACATCCCTTTATTGTAAACGTTCGGCCCTCAGAATCATAGCATGTTTTGTCATTCTAGCTATTTATGTGAACatataaaaagaatatatttgaatttttgtatatattgcACACTTTTACTGCAGTAGTATGAGTTGAGTAATATTCTGCTCTTAGACAAGTAGTAGTTTCTGTCTGAGATATTTGTGCCTTTGttttgagtgtgtatgtgtatatgtgtgtgtacatgttggAAAGAATAATCGCTCAGGAAAATGTTAAACCAGAATGAGCTTTTTTGCCATCTGCATTGAATCAAACTTtctattattcatttttcagcCAAATTGTTAGAAAAAGAGGATATCTTTCTGCAGAGATCTCTaggagtgagtgtgtttgtgtgtgtttggcccTGTCTTTACAGTCTTCACACACGCTGATGTGAATGTTTGCCTGCATGTACGAGTGTTTGTGCCTTTATCCCAGCCGATGTGACTCTACAGTTAGTATGTGGCAATGCATATTAGATTGCATATCCTCAAGCTTGactcgacttttttttttttttttttttaagcttccATGATGAAGTTCAAAGAGCTATGTAACATGAAATGTTTACAAGGTATGCCACATCTTTATGCGTGGCAGAGTGCAGTAGGTTTGGAGCATAGGTGTCGTCACTCACAGAAGTTGCTTTAATCATTTCGCCAAAAACCGTTCAGGGTCAGAAACAGGAACAACCAGTACTTACTGtactcaatgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtagctgttgtgCCTCatcatttaaatacacaagTGTCATCCTCAATCATTTGATGGAGGAATACTTGTACCATTTAGTTTTAATTGATGTAAAtctattgacttttttttatgtatgtgtgtatgagtgggtgcaataatcagtgtgtgtactTACTGTGCTCAACGAGTGTTTTGGGCCTACTggaacagacatacacacaaatgtattTCAAATTAGCAAGTTTGTTTGTGCATGtaatgtgatttgaattacaagCCTGTTTCAAcgcacaggtttttttttttttaatggccatGATTCTCACAGCTTGTACTCACTGCTTTTTTTAGTAAAGAATTTTTGAGTATGCCTAGACTTTTATAAGATATaggattaaaatatttttcactaAGATGATGCAACATTTTAGCTCCACTGAGTTCCTTCCCAGACGTGCCAACAGGAAGTAGTACAGAAAGCACTACTTTAATTATAGCAGGAAAATCTCAATTTATGCCACATCAGATGTCAGATATTTGTTTGGCTATAATGTTATGGAgaaagtgttattttattttggtattttatgttaacttaaaaagaaaaaaataaagaaaaagttaaCAGCTGTA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
K14947 ESRP1_2; epithelial splicing regulatory protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU389620 lncRNA downstream 1785 8044983 ~ 8045597 (-) True G328864
TU389535 lncRNA downstream 143495 7903642 ~ 7903887 (-) True G328798
XR_004576979.1 lncRNA downstream 247997 7780040 ~ 7799385 (-) False LOC113533080
XR_003403393.2 lncRNA downstream 247997 7797200 ~ 7799385 (-) True LOC113533080
TU389256 lncRNA downstream 482190 7561326 ~ 7565192 (-) True G328586
TU389677 lncRNA upstream 68440 8133683 ~ 8133887 (-) True G328908
TU389718 lncRNA upstream 147513 8212756 ~ 8215254 (-) True G328942
TU389830 lncRNA upstream 268588 8333831 ~ 8334176 (-) True G329039
TU389840 lncRNA upstream 285989 8351232 ~ 8351641 (-) True G329049
XR_004576942.1 lncRNA upstream 507901 8573144 ~ 8576124 (-) True LOC117595772
XM_026924583.2 mRNA downstream 87598 7955305 ~ 7959784 (-) False sgk2b
XM_026924582.2 mRNA downstream 87598 7955305 ~ 7959784 (-) False sgk2b
XM_026924581.2 mRNA downstream 87598 7955305 ~ 7959784 (-) True sgk2b
XM_026924836.2 mRNA downstream 97363 7935463 ~ 7950019 (-) False l3mbtl1b
XM_026924324.2 mRNA upstream 30340 8095583 ~ 8106001 (-) True rnf41l
XM_026924326.2 mRNA upstream 30340 8095583 ~ 8105889 (-) False rnf41l
XM_026924822.2 mRNA upstream 93129 8158372 ~ 8164264 (-) False pdp1
XM_034297941.1 mRNA upstream 93129 8158372 ~ 8164207 (-) False pdp1
XM_034297942.1 mRNA upstream 93129 8158372 ~ 8164113 (-) False pdp1
TU389089 other downstream 661076 7378780 ~ 7386306 (-) False sec61b
TU388974 other downstream 984954 7056794 ~ 7062428 (-) True G328342
trnam-cau_47 other downstream 1617450 6429860 ~ 6429932 (-) True trnam-cau_47
XR_003403372.2 other downstream 2069003 5829474 ~ 5978379 (-) False zfpm2a
XR_003404173.1 other upstream 2219591 10284834 ~ 10284937 (-) True LOC113541360
TU391129 other upstream 2457489 10522732 ~ 10523263 (-) True G330185
XR_003404157.2 other upstream 2857883 10923126 ~ 10930775 (-) False ackr4b
TU391338 other upstream 3017025 11082268 ~ 11083151 (-) True G330379
TU392350 other upstream 4611338 12676581 ~ 12677933 (-) False LOC113541288

Expression Profile