RNA id: XM_026924762.2


Basic Information

Item Value
RNA id XM_026924762.2
length 3489
RNA type mRNA
GC content 0.42
exon number 6
gene id trim35-28
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7890628 ~ 7897309 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGTCGCTTGTGCGCATGCTCGGGCAGGGGACGCGGATTGGGTAAGCTGAACAGCAAAGGGACAGGAACTGGAAAACACGGAACTTCGAAACGCGGATATTTACCGAAATTAGAAAGGcgctaacatttaaaaattaacaaatttaCTGAAACAAAAACTTACTGAGATTCAAAAGTCAAGACTGGGAgagtagtggtgtgtgtgtagggggggAGAAACCCGTAAACGtctccgtttatagttacaggaggtgagaaagtgaaagtaaacGCAGGTCTTACCAACATGGCCTCCGCGATGGACGAGGATATTACCGACAGACCGTCTCTTCTCGAGTCTGACCTGAGCTGTCCGGTGTGTAGGGATCTTTTCCGCGACCCTGTGCTACTCTTATGCGGTCACAGCTTTTGTGAAGAGTGTCTGGAGAACAGCTGGAAGAACAAAAACACCAAGCTGTGTCCCGTGTGCCGGAAGAACTGCGACGGAGAGACGCCGATCCCGAACCGGGCCCTGAAGAACACGACCGAGTCTtttcagaaagagaaaggatGGCGCATTACAGGAGCTCCACAAGTGATCTGCGGCTTACACCATCGCGATCTGCAGCTGTACTGCATTCATGATGAGGAGCCCATATGTGCGGAGTGtgttgcactgcattctggCCATGATGTCAAACCTATAGACCATGGAGTTCAGTACTGCCAGGAGCTGCTCGAATTAAAAGTCAAGATCCTTGCTGACAAATTGGAGTCTTTTAAGAAGCTGAAGAAACGATGTAACGAGACAGTCAATTATATTCGGAGCCAGTCAGAGGAGGCAGAGAAGCAAATCAGACAGGAGTTTGAGAGGCTCCATCAGATtctaaaagaagaagaagcctccAGAATTGTAGCCCTAAAGAAAGAAGAGGAGCAGAAGACAAAGATGCTGAAGGAGAAGATTGAAAGCATCAGCCGTGATATCACCACTCTCACTGAACTGATTCAGTCGTTGAGGAGGGAGATGACTGCAGAGGATTTGGTTGTCCTACAAAACTACCAGAGTCTTAAACAAAGGGCTCAGTGGACAGATGAATCCCAGAAGTTTCCTCATGGAGTTCTCATCAATGTGGCCTTGCATGTTGGAGCACTGGATTACAAAGTTTGGGAGAGCATGCGGTCACAGGTCAAATGTTTTCCAGTGCTGATGGATCCAAACTCCAGTTCGCCATGGCTCTCCATGTCCCCTAGCTACGCAAGTGTGAAAGAGAGCACAGAGAGGCAATCAGTCCCAGACAACCCTGAACGCTTTGACCCCTGCGTCTTTGTCCTGGGCTCGGAGGGTTTTATGTCGGGTCGCCATCGCTGGGAGGTCTACGTAGGTGATAACCCAAAGTGGGTCCTCGGAGTGTGTAAGGAGTCTGTGGCCCGCAAGAGGAAGTTCACAGTGACTACGTCAGGAGGCGTGTGGAGCATCGGCTTGAGTAAAGGAGCGTACAGCGGTCTGACTTCTCCTCGCACCCCACTAACCGTAGAGAAGAGGCCAGAGACAATCAGGGTGAAACTCAACATGGAAAAAGGAGAGGTGTCCTTCTGGGATGCAGACAGTGGGGCACACCTCATCACCTACAACGACAAATTCCCTGAGAAGCTCTTCCCTCTCTTCGGCCCTGGGCTCCACAAAACTCCTATGGCTATCCAGCCTGCTAAACTCACCATCCATAAGTAACAATGATATGcataggggtgtaacgatacagtATGACATATCATATTGTTCAATACAAGGCTCTTGATTTGATATATTTTCGtatcaaaacacacattcaACAGAATGCATAATGAAATGAATACCTTTGCGTCTGTGCCAACATCACGGAGATGaaaacacactttctctctctctctctctctctctctctctcggtctatctatcactcattctctctctttttctctttgggAAGTTTGTAGCTGCAAATATAAGACTTGctatagttcagaacgcaggactcaaaaacaagttgccagggttgccaggtttgaGGATTTTACACCAAACAGGGATAGTTTTGAAACGAGGTTGCAGGTTGAAAAATTAAGTCAGTGAAAGCGCAAAGaatgagaaaaggaagaaatagGGTGGAACTGGTAACCCAGCACACCGGTGAAAGCTTAGATCGCCACTGTTTAATGagacatgttttaattttttttttacattctaattCACAGAGTCTGCTCACACAAGCGCCGTGTCATTATAAATTTTCAATGACTTTTATACTGTTGAATGTTCAAAAATATCAACTGTATCGAAAATGTATCATATCAAGATGCCACTGTTTCGTATCGTATTTGGATTTTGTGCATCACCCCCAGAGTAAACATATTATGCACATATGAGCATAAAAAAGTATGGAAATGGAAAGAGAACTCTGTGAAAGAAGGGGGAGTCGCTACAGTTTTGGATGAAATACTGAGGTTATGGTTTGAGTATATTGTAAGCTTGGGAACCAAATCCTAAAGCTAGATAGATTCTAATCTAGAAAATAAGTCTTGCTGCACATTAATTTATGAAAGAACTGTTCAAATATCATACTAATTTGTGTCAATGAGTTGGATTTATGAACATATAATGTTTATTCTTAAAATCCTTAAATTGTTGAAACTTTTATAGGTGATTATAGGCCATTTATCAAGTTTGcaaatttctgtattttattttctttatttttttgctggtaAATTTATTCCCATATATTGCTGTGCCACAAGTTCCTCCTATTACCACCCTAACATACATCTTTCTTTTTgccttttctgtctttccttttatcttttatttattgtcttttctctctctctctctctctctctctttgtttcttctcCCCTTTTATTCTCTTATCTtactctttctcttccttcccttaaattaatttctttacaGTATTCCACTCTGTCATGAATGTTAACAATTTCAAACTGCTgacttttaaaacttaaaatatttttaacgtgttgttaaaaaaaatcattttagctCCTTGCAAGCAATGAATTCTCTTCAGGAAAATACATACACAATTAAGAGGGCTTCAGATAGAGTAACgtttattttacactttgtctatattaaaaatgtaatttacattCCGTAATATAGAGCAAAACTGATGAGAGAGGCATAATATGATTTGACATGTCATAAAATTGATTAAAGTAGGTAAACTGATTTGCATTACCTAATGATCAAAAGAGTAAGCCAGAAATGTAATCATTCATAAATACCATGGCCTGGCTACCCTTGGACTACAGCCATAACCTACAGCCCTACACTACAGTctaatggagagagagggagagtttATTGTGTTGAAAATCATTGAGGCCCGACTGTATCTATAGTCTGTATTTGACtgtatttatagtgttacaTTTCACAGGGCAGTCATGAATGCAGCCTAAATCAGAACTGgctaaataaatctgttttcaATTA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU389297 lncRNA upstream 231549 7657141 ~ 7659079 (+) True G328620
TU389095 lncRNA upstream 498180 7392241 ~ 7392448 (+) True G328441
TU389077 lncRNA upstream 517128 7373280 ~ 7373500 (+) True G328427
TU388944 lncRNA upstream 621866 7267734 ~ 7268762 (+) False G328313
TU388945 lncRNA upstream 621866 7267734 ~ 7268762 (+) True G328313
TU389473 lncRNA downstream 207953 8105262 ~ 8105462 (+) True G328750
TU389477 lncRNA downstream 237771 8135080 ~ 8135455 (+) True G328754
TU389478 lncRNA downstream 238208 8135517 ~ 8136163 (+) True G328755
TU389722 lncRNA downstream 319137 8216446 ~ 8216654 (+) True G328944
TU389774 lncRNA downstream 360216 8257525 ~ 8264036 (+) True G328995
XM_026924055.2 mRNA upstream 306797 7578989 ~ 7583831 (+) True ino80c
XM_034298069.1 mRNA upstream 439441 7426279 ~ 7451187 (+) True tmem245
XM_034298070.1 mRNA upstream 439441 7426280 ~ 7451187 (+) False tmem245
XM_026924642.2 mRNA upstream 466437 7417374 ~ 7424191 (+) True LOC113532919
XM_026924704.2 mRNA upstream 499744 7386580 ~ 7390884 (+) True alg2
XM_034298015.1 mRNA downstream 4206 7901515 ~ 7902561 (+) True LOC113532663
XM_026924146.2 mRNA downstream 8563 7905872 ~ 7924253 (+) True epb41b
XM_026924147.2 mRNA downstream 8563 7905872 ~ 7924253 (+) False epb41b
XM_026924148.2 mRNA downstream 8563 7905872 ~ 7924253 (+) False epb41b
XM_026924149.2 mRNA downstream 8563 7905872 ~ 7924253 (+) False epb41b
TU387482 other upstream 2552377 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 2960474 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 2966947 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 3877090 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 5320889 2565700 ~ 2569739 (+) False G325435
TU389428 other downstream 4483 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 490878 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 717764 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 871436 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 871437 8768746 ~ 8819267 (+) False LOC113532648

Expression Profile