RNA id: XM_026924767.2


Basic Information

Item Value
RNA id XM_026924767.2
length 2507
RNA type mRNA
GC content 0.48
exon number 14
gene id dbf4
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5400933 ~ 5411050 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTGGCAGTGTGGAATTTATCTGTTAATTATTtcatgttattcatttttattaagtgTGAggaagtggattttctgagcggGAAAATGGAATTGTTTTGTTTGGCGTTTGTGGTTTAGagaataacaaaacaaacatagtGGAGCACTTCAGTGTTATATtttgcaaataaatgaataaatgtaaataaatatcaacTCGAGGACAACTCGAGTCCAGGAAGTTCATGAATATTCACGTAGACTTGCTTGGGtaatttgttagctagctgttagCTTCATCCGGGTTTGAACTTCCGGTGTAACGTTTGTCCAGTTTAAAAAACGGGGCACATTTAAACAACTCGGCCTGCAGATGCAAATCCAAACTGACACCAGAGCTCCTCATCACTGAATCTGGCAGCTGTAACAGAGCTCAACGTAGAGAAAGTAAAgctccTGCATGGTAACGGTAGCTAAGGAACTCTTAGCAACTCCTACACTGTAATGAAACACCAGAGCTTTCCCAGATCTACCAAACCACAATTTCAAGaCCCAAAACTGGACGACGATGAACACCGAAAAGCTGCATCTATCAGGAAACATCATCCAGCGTGTGAGCCAGTTCAGAAGAAGCCCTTGGCTGGGCGAATCTTTTATTTGGATCTACCGTGTAACAAACGCAGCCAGGCTTTAGAAACTGATATCAAGAGCCTTGGAGGAACAGTGGAAAAGTTCTTCAGTAAAGAGATTCGATACTTGGTGTCCAGTAAACCTGAAGCTCGGCATGTACAGCGGCTCGTTCAGGACTCCCCGGTGCCGAGTCCAGACTCGGGCCTCAGCTCCCCCCATCCTGGCAGCAGGAGGGACAGTCACGGCCACCGAGGCAGCTCACAGGGACCTGCTGACACCGTGGTTGTAAGCCGAGGGAAATCCTTAGTGGAGAAAGTCGTTAAGGAACAAGAGCGTATTCAGATGAACAGAATCCTGGCCAATGCACTTGAATGGGGTGTAAAAATCCTCTACATTGATGATGTAATTTCTTATATTGACAAGAAAAAGAGCACAATTGCTAAAGTCAGAGCAGCGACTCACTCAGTGAAGAaagctGCCAAACCTGAGCCCACAGATGGGACTGCTTCTCAGAAAAGCAAACGACGAATCAGTCGCCCCTTTGTTAAAGTGGAGGACTCTAGCAGacactACCGTCCCCTCTATCTCCCCATGGCCAACATGCCTGTGTGTAACCTCCGATCTGCTGCCCCCTGCAGTCCCTTCTTGGAAGAAAACGATAAAGACGACCCTGGGAAAAAGACAAAAGGGTGCGGGTCTGGAGGAGATCGACGGGAGAAGAGCAGGAAAGACAGGCACCGAGGCCGTGAGGGAAAGGGACGAAGGAAAGGGGGCTACTGCGAATGCTGCATTGTCAAATACGACAACCTGAAAGCTCACCTGCAAAGTGAGCAGCATCAGGCTTTCTCTAGAAGTGAGGAGTACCTGGTGGTGGACAGAGTTATCTCAGGACTCACCTGTGATTTTGTACACATCAGCCCCCAAATAAAACGGGTGAAGTGCAGTGTTACCTCCCCGCTCATCGTTCCTGGACCAGCTGTAAGGAAGGACGGAGAAATGGAGGTTGAAGAGGAGGATGTGACTGACGAAACCCCGCTCTGGGGCTCTCACAACACGGAGCGATCGGTCCGCAAGCGCTCCAGAGAACTCTCCCAAAGTCCTAAAGGAGACTCAGCAGGACAATTGGACACTTTTCAGAAATCCCAGTCCAAGCGTGGTTCATTTGAATGGGAATCCAGTTCTAATGCTGCTTTACAGAAGGCTTTGTGTAcatcagtgtgtaacaccagaCAAGACTGTCTTTCTGAGTGTCTGGAGAGGACCAGGACCTCATTACACACTCGTTTAGAACAAAGGACTTCACAAAGCACACAGCATGTTAGACTTTCAGATCCTGCGGCGTTCGGTACGACTTGCAGTTCATTGGGTGCAGGGACCTCTCGCGTGGTGTCAGAGCCGTCTGTAATGTCAGACTTTCAGACTGCACCAAAGTTAGTTTCAGATGTTACAGAATGTACAACCGAGAGACCTTTCTGTAATACAGGCAAAGCACCTGACGTTACACATCATGGACCCATCACAGAGGAAATGTCTTCTTCCAACACGGACATTCTATCTGGAGCCTTGCAAAGAAAAGTGCGGACATGGAGGCGGAGACGAACCGCACCATCCGAGCCCCTGTGTGGCCTTTCTGGTAAACCTGTAGAATCCCAGACCCTTCAGTGTCTCGGAAAAGTTTCTGAGTCTCGGGGACGCTCAGCATCTGCCCTGGACTTATGGCAGCTCTTCCAGTCCAGCGGTGACATGGAGGAGGATTTTAAGGGTTTCTACAATTTGTAGAAAAGGATATTGAATATGAAATGAGCATTGGcaaagcttgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtttgtgtgtgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387473 lncRNA upstream 86345 5311231 ~ 5314589 (+) False acbd7
TU386838 lncRNA upstream 371144 5019782 ~ 5029790 (+) True G326462
TU386818 lncRNA upstream 411618 4985490 ~ 4989316 (+) False klf10
TU386834 lncRNA upstream 417254 4983473 ~ 4983680 (+) True G326458
TU386812 lncRNA upstream 476298 4924178 ~ 4924636 (+) True G326440
TU387573 lncRNA downstream 130308 5541358 ~ 5541889 (+) True G327071
TU387696 lncRNA downstream 194820 5605870 ~ 5607099 (+) True G327178
TU387921 lncRNA downstream 421943 5832993 ~ 5833262 (+) True G327385
TU387927 lncRNA downstream 431169 5842219 ~ 5842438 (+) True G327391
TU388624 lncRNA downstream 1237230 6648280 ~ 6708779 (+) True G328024
XM_026923889.2 mRNA upstream 14308 5356182 ~ 5386626 (+) False rundc3b
XM_026923887.2 mRNA upstream 14308 5356184 ~ 5386626 (+) True rundc3b
XM_026923890.2 mRNA upstream 14308 5356184 ~ 5386626 (+) False rundc3b
XM_026923888.2 mRNA upstream 14308 5356187 ~ 5386626 (+) False rundc3b
XM_034298071.1 mRNA upstream 69720 5317198 ~ 5331214 (+) True crot
XM_026924170.2 mRNA downstream 4882 5415932 ~ 5492739 (+) True adam22
XM_026924167.2 mRNA downstream 4884 5415934 ~ 5492739 (+) False adam22
XM_026924169.2 mRNA downstream 4884 5415934 ~ 5485468 (+) False adam22
XM_026924168.2 mRNA downstream 4885 5415935 ~ 5492739 (+) False adam22
XM_026924674.2 mRNA downstream 135501 5546551 ~ 5547833 (+) True mrpl32
TU387482 other upstream 62683 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 470780 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 477253 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 1387396 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 2831195 2565700 ~ 2569739 (+) False G325435
TU389428 other downstream 2490742 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 2977137 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 3204023 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 3357695 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 3357696 8768746 ~ 8819267 (+) False LOC113532648

Expression Profile