RNA id: XM_026924770.2


Basic Information

Item Value
RNA id XM_026924770.2
length 1692
RNA type mRNA
GC content 0.46
exon number 11
gene id slc25a40
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5391417 ~ 5400856 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAACTACAACATGCCCACTGTCATGTGCAGGTTAAAGAAAACGTGAACTTCCAGTCGGCTACATGCCACAGTTAGAGGGTTTGCAGGGCtgttgcaggttttttttgtccGATTTAGACTACCTGTACGTTGCTCTAATGCTGTCATCGTGGAGATATATTTAAATCTGAGTGAACATTATAAGAATTGCATGATTAGTGTAAGTTTCTATTTATCTCTAGCTAGAGAAACAGCTCCAGGACACAGTAAATGATATGAAAGGGTTGTTGAGGATCACTGGACTGGATTTCGGTGAGGAGTTCACTACAAGGGAACAGAAAAGTTCTCGGATTGATTACAAACCTCAAGAAAGACTAAACCAAGGCTGGTTGAGATGACTTCTCAGACTTTTCAGGCCAACATGGACAGTATAACACCAGTTCAGCAGATGGTGGCTTCTTGTTCTGGGGCTTTGCTCACATCATTGTTTGTAACTCCATTGGATGTCATAAAGATCAGACTCCAGGCACAGAGAAGTCCTTTATATAAaggtaaatgttttgtgtattgCAATGGCCTGATGGATCATATATGCGTGTGTGAAAACGGGAATGTAAAAGCGTGGTACAAACCTCAGGGTCATTTCAACGGCACACTGGATGCCTTCATCAAGATTGTACGCATGGAAGGGATCAAGTCGCTGTGGAGTGGCCTTCCTCCAACACTAGTTATGGCAGTTCCAGCTACAGTGATATACTTCACCTCTTATGACCAGCTCTGTGCTGCTCTCAGGCACCGGATGGGGGAAAGATCAGACCTGGCACCGCTATTAGCTGGAGCAATAGCTAGAGTGGGCTCCGCTACTCTGATCAGTCCGCTAGAGCTGATCCGCACTAAGCTGCAGTCAGAGAGACAGTCATACAGAGAGCTGAGCGCCGTGATCCGCTCGGCCGTACACACTGAAGGCTGGCTCGCTCTCTGGAGGGGTCTCGGGCCCACGCTGCTCAGGGATGTACCAttttcagCCATGTACTGGTACAACTATGAGAAAGGTAAAGCCTGGCTGTGTCACTACAACAAGACGACTGAGCCGACCTTCAGCATCGCCTTCATCTCAGGAGCAGTGTCCGGCTCTatTGCGTCAATTGTAACGCTGCCGTTTGATGTGGTGAAGACCAGGAGGCAGGTGGAACTGGGTGAACTGCAGGCTAGGAAATTAGTGTCATCTCAAGCCTCGTGTTCAACCTATACAGTGATGAAAAGAATCGTGGCAGAGAGCGGCATCCAAGGACTGTTTGCGGGTTTCATGCCTCGGCTGATAAAAGTGGCTCCAGCCTGTGCTATAATGATAAGCACTTATGAGTTTGGCAAGGCCTTCTTTCGCAAACAGAACCAGAAGGACAGACCAGTTCTCACACTGCATACCACCAACACCTAATCACTCCATCTGTCATACACTCTTTAtaactttaaacacacacacacacacacacgcacacgatTGCTTCAGCTAGGACCTGAAACCATCCTGCAAACACTCATCTAGTTATAATGAATCATGAGCAAGCTGAATAACGTTGGCCTTTTGGTACGGATTCGGACGGGAACAGCAGTACATAAATTCCATGTGTGAAGAAATTTTGGCACCCTAAATACCCTCAAGTTAAGctttatgcataaaaaaaatcacccaacTCTGATAAACCTgcatga

Function

GO: NA

KEGG:

id description
K15119 SLC25A39_40; solute carrier family 25, member 39/40

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387478 lncRNA downstream 76762 5314207 ~ 5314655 (-) True G326995
TU387472 lncRNA downstream 81152 5310049 ~ 5310265 (-) True G326989
TU387455 lncRNA downstream 96185 5294732 ~ 5295232 (-) True G326981
TU387428 lncRNA downstream 134141 5257051 ~ 5257276 (-) True G326960
TU387426 lncRNA downstream 135406 5255795 ~ 5256011 (-) True G326958
TU387897 lncRNA upstream 337693 5738537 ~ 5739588 (-) True G327362
TU388044 lncRNA upstream 435226 5836070 ~ 5836306 (-) True G327505
TU388046 lncRNA upstream 436645 5837489 ~ 5837782 (-) True G327507
TU388047 lncRNA upstream 437039 5837883 ~ 5838277 (-) True G327508
TU388102 lncRNA upstream 682522 6083366 ~ 6084649 (-) True G327560
XM_026924200.2 mRNA downstream 41584 5332129 ~ 5349833 (-) True abcb4
XM_026924201.2 mRNA downstream 45534 5332129 ~ 5345883 (-) False abcb4
XM_034298072.1 mRNA downstream 82313 5307441 ~ 5309104 (-) False rpp38
XM_026924203.2 mRNA downstream 82313 5307441 ~ 5309104 (-) True rpp38
XM_026924952.2 mRNA downstream 175117 5205561 ~ 5216300 (-) True si:dkey-65b12.6
XM_026924172.2 mRNA upstream 57389 5458233 ~ 5463036 (-) True cldn12
XM_034297800.1 mRNA upstream 92385 5493229 ~ 5512596 (-) True washc5
XM_026924632.2 mRNA upstream 113998 5514842 ~ 5522545 (-) False LOC113532914
XM_026924635.2 mRNA upstream 113998 5514842 ~ 5522535 (-) False LOC113532914
XM_026924633.2 mRNA upstream 113998 5514842 ~ 5522383 (-) False LOC113532914
TU387192 other downstream 413890 4963617 ~ 4977527 (-) False ubr5
TU387191 other downstream 413964 4963617 ~ 4977453 (-) False ubr5
TU386070 other downstream 2152270 3237701 ~ 3239147 (-) False LOC113532533
TU385328 other downstream 3293982 2088259 ~ 2097435 (-) True G325145
TU384835 other downstream 3940701 1429932 ~ 1450716 (-) False kif13a
XR_003403372.2 other upstream 428630 5829474 ~ 5978379 (-) False zfpm2a
TU388042 other upstream 475252 5876096 ~ 5978268 (-) False zfpm2a
trnam-cau_47 other upstream 1029016 6429860 ~ 6429932 (-) True trnam-cau_47
TU388974 other upstream 1655950 7056794 ~ 7062428 (-) True G328342
TU389089 other upstream 1977936 7378780 ~ 7386306 (-) False sec61b

Expression Profile