RNA id: XM_026924776.2


Basic Information

Item Value
RNA id XM_026924776.2
length 2554
RNA type mRNA
GC content 0.42
exon number 8
gene id stx17
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7248388 ~ 7268807 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGAGCAAATGAATGTTTTTCGTCATTAGTTTCAGTCTCTTCGATATGAAGCTCTGAGCTTTGTAACTAGCTAGCCTGAGTTAATGTGTGAATACTAAAcggctccctactccctatatAAGCGCGCTATGTgtagaatataaaataatgaattgtacgccctatgtagtgcacaatGTGAGGTTTTTTTAGGTGTTTAGGATTCAGCCTTTGTGAAAGAAACCGTCTCTGGTCAACTCTTTGAAAACAACTGGGCCATAGTCAGATGTGAGTCACACTATACGTATAGGATGAGTGTATGGTCGAACCCGTGACCTTTCAGAGAGGTTGAAGCATGGCAGATGAGGAGGGTAAGCTGACGCTGCGGCGCCTGGAAGGACCCATCCAGAAGTTCATCAAAGTGGTGATTCCCACTGATCTGGAGCGCCTTCATAAGCACCAGCATAACATAGagaagTTCCACAGAAACAGCCAATGGGACAAGCTGCACCAGGAGCATATCAATGCTAGTCGCACTGTGCAGcagtTGCGCTCTAACCTGCACGAGATGGAGAAGTTGTGCCAACGTGTCCGCAGCTCCGAAGCACCTGCACTGGAGAAACTcgtccagccaatcagagagcgaGCCTCAGTCGCCACTCAAGACTTCCTGCGGCTTCATTCGGACTCTGTCAATCATCCAGGGCCACACCCACAACAGACCGACAGCACAGACACTCGCGCAGCCTCCGATTTGGCATTTAGTGAAGAAGATGTGGGCGGGGCCCAGTCACCTGTCACTCAATTCCAAGTTCATTTACCTGCCATTCCAGCTGAACAGAATGCTGCGGAATCCTGGGACTCGTTAGAAGAGgATCTGTTGGAGCTCAATGGGTTAGTGACTGAGTTCTGCTCCCTCGTGCATGCTCAGCAGGAGAAGATCGACAGCATCGAGGCCAACGTTAGTGCGGCGGCGGCTAACGTGGAGGAGGGGACACGCAGCCTGGGGAAGgcagCACGTTCAAGCCTGGCAGTGTTGCCCGTAGCAGGTGCAGTGGTTGGCACCGTCTTGGCCGGTCCACTTGGATTGCTGGCGGGATTTAAAGTGGCCGGTGTGGCAGCCGCAGTGGGAGGAGGCTTGCTCGGCTTCGCTGGAGGAAACCTCATCCAACgcaagaagaaagagagagtggagTTGCAGCTTCAACGACTCGACACTAACCAGGAACACGAGCATGTGCAATAACACACCTGCTCCTGCTGAGGAGAGTGGAATCCTGTACTgacacacattttaatctgcACAACGCTGGTATTTATACTACACTCATCTCTCAAATCTACTGCCTTAAAGAGactgtttttgcaccaaaacaacaatttccaaagtgtgtgtagtagtatataatataataacctGTGTTATTGACGTGACTGTTGGTCAGAATGTTGTTTGTTTACTGTGTGTGCGCCATATGGGGACACTTTAagctgtggtaaaaaaaaaaaaaaaagatttataccAGGGGTCTTTTATTGATCGAGCTGTGCCAGATTGCCGACGTCAGAGATCACCAGGGTGTCACTGGTGTTGGGGTTATGAATGATGAGCTTGAGTGCAACACGAATTGTACACTGTGAAGTGTGTGGCTATGGAATCATTCGCTAAAATCACACAAATATGAGACAACAATAATAgtcaaataatcaaaattagGCATGTCACAATTATTACATAACAGTTTTGAAATAATTAGTATTGAGACTAAATcattagatatatatatatataatttattactgttttgcTGTTGAACTTGTAATTTAGCCACTTTTACTAAAAACTTGTAGATGAAGAGAattttacattactttacataGTTTCTGCTGTAATTGTGTTTTGGATACCTTAGTAATAAGTTTTGTAgctatatttctttattttttttacagtccaaaaaacaacaaacgcAAACAGAAATTCAATATGAATTTATATATGAATAGCTGTTTCTAAATAATGTGAGCTATAAATATGCATTATTACACTACGGTTATGGATATATATGGCATAAAGTCCCCAGAGATGACAGTTACATTGTTAATCATCAGTTTTATATTAGTGAAAGGCCTAATCacagtaattatttaaatggaGTTAACTATTTAAATGGAGTCAGACTACAAATCCTGTCTTTACACAgggtttgtacagatgcttgaACTCTGAACTTGTGTTTTTAAGGTGTGAAATGTACTTATGCAGGTTTTGCAAGAAAGACATCAACAACATGGAGACATTTGCAATTTGTGCCAAATAGCAAGCAACTGCATTATAATACCTTTAGCATTGCagtaaaattgtgtaaataatgCAGGTAAGTAACTAGCTAGCGTTGTTTCAAGTGTTCAGAATTAGGACCTAACATTATACAGTTTAGTACAGTTTAAAAAATCAAAGCTACTGTCATTTCTTTAAACCCAGTCATTCCTGCAGAAACCTATTTAAGCTTAAAAGTCTAATGACCCATGTAGAAAGTTctggaaaattaaattaaattaaattaaaccgtGT

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006887 exocytosis biological_process
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU388824 lncRNA downstream 215664 7031364 ~ 7032724 (-) True G328215
TU388687 lncRNA downstream 507342 6648296 ~ 6741046 (-) False G328083
TU388686 lncRNA downstream 539621 6648296 ~ 6708767 (-) True G328083
TU388498 lncRNA downstream 917103 6256403 ~ 6331285 (-) False arhgap33
TU388102 lncRNA downstream 1163739 6083366 ~ 6084649 (-) True G327560
TU389090 lncRNA upstream 108271 7376887 ~ 7378436 (-) True G328439
TU389234 lncRNA upstream 179557 7448173 ~ 7448967 (-) True G328565
TU389231 lncRNA upstream 181781 7450397 ~ 7452117 (-) True G328562
TU389250 lncRNA upstream 240253 7508869 ~ 7509107 (-) True G328580
TU389258 lncRNA upstream 289779 7558395 ~ 7558649 (-) True G328588
XM_026924886.2 mRNA downstream 24540 7185077 ~ 7223848 (-) True invs
XM_034297853.1 mRNA downstream 93814 7141490 ~ 7154574 (-) False LOC113532705
XM_034297852.1 mRNA downstream 93814 7141490 ~ 7154574 (-) False LOC113532705
XM_026924237.2 mRNA downstream 94602 7141490 ~ 7153786 (-) True LOC113532705
XM_034298089.1 mRNA downstream 111429 7124011 ~ 7136959 (-) True LOC113532854
XM_026924343.2 mRNA upstream 10945 7279561 ~ 7310012 (-) True nr4a3
XM_026924706.2 mRNA upstream 110115 7378731 ~ 7386347 (-) True sec61b
XM_026924208.2 mRNA upstream 185258 7453874 ~ 7568606 (-) False galnt1
XM_026924206.2 mRNA upstream 185258 7453874 ~ 7568606 (-) False galnt1
XM_034298032.1 mRNA upstream 185258 7453874 ~ 7568606 (-) True galnt1
TU388974 other downstream 185960 7056794 ~ 7062428 (-) True G328342
trnam-cau_47 other downstream 818456 6429860 ~ 6429932 (-) True trnam-cau_47
XR_003403372.2 other downstream 1270009 5829474 ~ 5978379 (-) False zfpm2a
TU388042 other downstream 1270120 5876096 ~ 5978268 (-) False zfpm2a
TU387192 other downstream 2270861 4963617 ~ 4977527 (-) False ubr5
TU389089 other upstream 110164 7378780 ~ 7386306 (-) False sec61b
XR_003404173.1 other upstream 3016218 10284834 ~ 10284937 (-) True LOC113541360
TU391129 other upstream 3254116 10522732 ~ 10523263 (-) True G330185
XR_003404157.2 other upstream 3654510 10923126 ~ 10930775 (-) False ackr4b
TU391338 other upstream 3813652 11082268 ~ 11083151 (-) True G330379

Expression Profile