RNA id: XM_034298242.1


Basic Information

Item Value
RNA id XM_034298242.1
length 3179
RNA type mRNA
GC content 0.49
exon number 21
gene id l3mbtl1b
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7935463 ~ 7950730 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACGTTGCTGCAGTGTGGACTGATAACGGCAGAAAATGGCACTGAATCTCAGTTATACGTTACAAACTAAAGCCTACGACTCAAACACCTAAACAGCGACATGGATTCTGGGCCTGCTCGGTGTTAGTGAGCAGATCTGATCAGAGCTAGACAGAGTATAGCCGAACACGTGATAGAGACAGGAAACCAAAATCAGTGGATTCCCCACAACCACCCGACTTACAGATGCTTTCGCTTTGAAACGGTCTAAAGACAGTAAAGTTGAGCTAGTGAAACGAGCAGAGCACAAGCCCAAGTGTGAAGAGCGTCGTGCATAGCACAAAGCCACTGTAAGCTCAGGCAAAGTAAGACAAAGTTGGGGATAAAGTGAAGATCACCCAGGGCGCACTGCAGCATGTGTCGTTACATCTGATCGCCTTCTGATCAGAAATCGATTCATTTTCggaacaaacacacagcatacTCATATTCAACAAGACTGCCATCTGCTTTGGGCTGTAAGAGTTTATCTCGCACTAAAGCTTTGTTTTCGGCAGAGATCACCGCCTTCATGGTGCGTTGTTATCACTCTTCCTCCCCATTGATCGCGTTGAAGTTTATCGAGCCCCGAAGTTGGCGAGAAGCAATAccttgcgcatgcgcagtgccgACTAACCATCCTGCTCAAAATAAGAGTTAAAAGAGAAACGAGggaAAAATGACAGACACACCTGCCAGCAATAGCTCAGCCCCAGGAGCAGATTTTGATATGATGGCTGCTCTTGATTGGAAGGACGGCATCGCTACGCTGCCTGGCAGTAACATCAGGttccGGATGACAGAATTTGGGACACTTGAGATTGTAACTGATCCAGAGCCTAAAGACAAAGAAGAGGAGTCTTCATGCCCACAGTCAGAGACTACACCCTCTAACGGCTCATCAGAGCCACCCAACCGTTCAACCCAGTCAGAAACGGCAACACTACGTGCATGTGATGGGGCTCCGTCAGGGCTGCAGACGCAGACAGGTAGCTCAAGCACAATGAGCACCAGCAGAGAGGATCGCTCCAATGTGGAGGTGGCCAGCTGTAAGTCCTGTGGCCACGCTGGTTCACGGGAGACCTTTCTCCAGGGAAAATTCTGCAGTTCAGGCTGTGTACAACCCAGCAGTGGAAGATCAACTCCAGGTGATACCGGAGAAGGTGAACGTTTAGGTAAACGAATtcggaagaagaagaagatgttCATGGAGtctgaggatgatgaggaggacAACATTGAGGAAGAGGAGGAGAAGTTTAGAGTCTCAAAAGGCAGAAAAGCAGCCAAACTTGCCAGATTGGTAACAGCTGCGCCCGCAAAGAAGAAGGCTTGGAGCTGGCCGGCCTATCTGGAGGAAGAGAAAGCTGTGCCTGCTCccttaaaattatttaaagagCACCAGGCCTTTCCTCAGAGCAGGAATGCCTTTAAGGTTGGAATGAAGTTGGAGGGCTTGGACCCCTGCCATCCTGCTTTCTTCTGTGTGCTCACTGTGGCAGAGGTCCAGGGTTACAGAATAAGACTTCATTTCGATGGTTACCCTGAGTGCTATGACTTCTGGGTGAATGCAGACTCATGGGATGTGAAACCACCAGGCTGGTGTGAGAAGATGGGCCTCAAGCTGCTGCTGCCTAAAGGTTGCAGAGATGGAGAATTTAATTGGAACACTTACGTAAAGAATTGTAGAGGCCAGCTGGCAcccaaacatttatttaaaagtctTAATACCTCAGTGACCCCCTCAGGCTTTCGTACTGGGATGAAGCTAGAGGCTATTGACAGGAAAAACCCATCACTCATCTGCGTAGCCACCATTTCCGCTGTTGTGGATAACCGCCTCCTCATCCACTTTGATAACTGGGATGATGCATATGATTACTGGTGTGATGCCAGCAGCCCGTATATTCATCCAGTTGGATATTGTGAGGAAGCAGAGTTAACACTGACCACACCTGCAGAGtacaaacaaccaaaaacttTCTCATGGGAGAAATACCTGGAAGAGACTGGAACCCAAGCAGCACCTGCTAGAGCCTTCAAACAGAGACCTCCACATGGCTTCCAGGTGGCAATGAAGTTGGAGGCAGTGGACAAACGCAACCCCATGCTCATCCGCGTTGCCACTATAGCAGCCACAGAGGACCACCGGGTCAAGatccATTTTGATGGTTGGAGCGATGAATATGATTACTGGGTGGATGCTGATAGCCCCGATCTGCATCCCGTAGGATGGTGTCAAAAGACTGGTCATCCTTTGCAGAACCCCAATTGTTCTAGTGATCCCCAGGTCCCACCAGGACAAGGCTGCCCTACTCCAGGATGCAACGGGGTTGGACACATCAAAGGACCTCGCTATGGAACACATTACACGGCCGTCAGCTGTCCCTACTCTGAGCTGAATCTGAATAAGGAGGGGCTGCTGCCTGACAGGCTGAGTGGAGAGAGGCCGGTGACACTGAGTGGCCCTTCACGGCACAGGCGCACAGAATCAGTCGCACAGACTCCCTCTACCACACCCACAGGCAGCAATCCTGAAACCAATGACAACATGGACAACTCCTCACCAGCCAAGACTGCCACTGCAGCCAAGTGCACAAAGCCGAATCAGGTGAAGCATGAAGGAAATGGAAAAGTAGATTCTCTGCAGCAGTTCTTGCATGACTCTGTGTTCTGTGGCTGGGAGCCACCCAAGTTTCAGCACTGCTGGGAGAAACATGGCAAACTGTTACCTGAAGCCCTGGGTCTCAGTGCAAAGACAGTGGCCAAGTGGAGCACAGAAGAGGTTGCAAGTTTTGTGAGAAAGCTACCAGGCTGCAGGGAACATGCTGCCATTTTCAGGAATGAGCAAATTGATGGTGAAGCCTTCCTCCTTCTCACCCAGTCTGACATTGTAAAGATCCTAAGTATCAAGCTGGGCCCTGCTCTGAAAATCTATAACTGCATTCTTATGCTGAGGAGTGTGGATGAAGAATAGCATCCCCACACCATGAAAACCTGTCTTAGTGCTTCTGTACTTATCAGTAACCACAAGGCAATCATTTTTCCTCATCTTTTTTTATCTCCCAACTTTGTGACTCATCCTTGCAATGGTGATAAGTTCACATTCTGTGTAGTCACTGAGGTTGCCCTATGATGAACAAGTACTTCAGAAAATTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU389535 lncRNA downstream 31576 7903642 ~ 7903887 (-) True G328798
XR_004576979.1 lncRNA downstream 136078 7780040 ~ 7799385 (-) False LOC113533080
XR_003403393.2 lncRNA downstream 136078 7797200 ~ 7799385 (-) True LOC113533080
TU389256 lncRNA downstream 370271 7561326 ~ 7565192 (-) True G328586
TU389259 lncRNA downstream 376500 7558684 ~ 7558963 (-) True G328589
TU389620 lncRNA upstream 94257 8044983 ~ 8045597 (-) True G328864
TU389677 lncRNA upstream 182957 8133683 ~ 8133887 (-) True G328908
TU389718 lncRNA upstream 262030 8212756 ~ 8215254 (-) True G328942
TU389830 lncRNA upstream 383105 8333831 ~ 8334176 (-) True G329039
TU389840 lncRNA upstream 400506 8351232 ~ 8351641 (-) True G329049
XM_026924151.2 mRNA downstream 4427 7927731 ~ 7931036 (-) True LOC113532661
XM_034297998.1 mRNA downstream 50750 7836660 ~ 7884713 (-) False megf8
XM_026924583.2 mRNA upstream 4579 7955305 ~ 7959784 (-) False sgk2b
XM_026924582.2 mRNA upstream 4579 7955305 ~ 7959784 (-) False sgk2b
XM_026924581.2 mRNA upstream 4579 7955305 ~ 7959784 (-) True sgk2b
XM_026924723.2 mRNA upstream 96656 8047382 ~ 8065243 (-) False esrp1
XM_026924724.2 mRNA upstream 96656 8047382 ~ 8065243 (-) False esrp1
TU389089 other downstream 549157 7378780 ~ 7386306 (-) False sec61b
TU388974 other downstream 873035 7056794 ~ 7062428 (-) True G328342
trnam-cau_47 other downstream 1505531 6429860 ~ 6429932 (-) True trnam-cau_47
XR_003403372.2 other downstream 1957084 5829474 ~ 5978379 (-) False zfpm2a
XR_003404173.1 other upstream 2334108 10284834 ~ 10284937 (-) True LOC113541360
TU391129 other upstream 2572006 10522732 ~ 10523263 (-) True G330185
XR_003404157.2 other upstream 2972400 10923126 ~ 10930775 (-) False ackr4b
TU391338 other upstream 3131542 11082268 ~ 11083151 (-) True G330379
TU392350 other upstream 4725855 12676581 ~ 12677933 (-) False LOC113541288

Expression Profile