RNA id: XM_034297913.1


Basic Information

Item Value
RNA id XM_034297913.1
length 7262
RNA type mRNA
GC content 0.49
exon number 34
gene id rims2a
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 6094031 ~ 6288364 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTTTCCAGCTGCTCTCTCCGGCAGTCAATGAGCGAGCGCCGCTGTCGGTGCTGAGCTCTGCGTCCATTTTTCCCTTCTTCCTCCTGTGCGTTTAAGAAACCttgaagaaacacacaaacctggaggagagaggaggaaatcGCAGGGATCCAAAGCGCAAAAGACTGGATGggttttcttgtttttacttCAAGGTGGGCTGAAGCTTGGCTGAGTGATGGGTTAGGACGGATTTGCTCATGATGCCAGAATAAACGGGCTCCTTTTGCACATCTGTACGTCCGGACAGGcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaacatggccGCGCCGCTCGCGCACCGGGGCCTGGCCGACATGCCGGACCTGAGCCACCTCACTGATGAAGAGAGGAGGATCATCCTCGACGTCATGGACCGccagaagagagaagaagagaaagaacagTCCATGCTGAAggtCAAAGAAGATCCAAAGCCTCAGTCTGCACAGTGGTTCAAAAGTCCCTTTAGTGGGATCACGGAGCTGGTTAATAACGTTCTCCAGCCGCAGACTAAGTCCCAAAATGAGCCTCAAAAAGAAGCAGCGACGGAGGAGGCGGAAACGAAGCTGCACCAGCAGTTTGAGTCGTATAAGGACCAGGTGAAGAAGATGGCGGAGGAGGCTCAGGCTGCTCCGGAGCAGAAAAGCGAGGCTCCCATCTGCGGAATTTGCCACAAGACCAAGTTCGCTGATGGCTGCGGTCACCTCTGTTCATATTGCCAAACCAAGTTCTGCGCCCGGTGTGGGGGACGAGTGTCTCTCCGCTCCAACAAGGAGGACAAAGTGgtAATGTGGGTATGCAACTTGTGCCGAAAACAACAGGAAATCCTCACAAAGTCCGGGGCCTGGTTCTACAGTGGGCCGGGCTCCACGATGCCTCCGGGGGTCACTGGGGTCATGCGCAGGCGCCATGAAGAGGCCCCTCAGGAGAAGAAAGCCAAACTGCATGATGCTCCGTTATTATATCAGAGCACCACAGTGGAGCGCAGCAGGGCCCCTGGTCTCCTTCGTCAACGCTCCCTTGACCCCGACAGGAAAAGAAGCCCTTCGGCGTCTAGGGAGCCAAATCCGAACTATCAAAGGGAGGAGCGTCCATCGCATTATGCCCCAGGACAAGGTGGCATGCCACGATCACCCTCCGACTACGGTCGCCCCTACGAGGATGCCCAGTCAGCTCGGGCGTCATACCGTGCCCGACGTGGTGCTTGGCACTcccaggaggaggagcagcaccCTCCCGAGCCAGGCTTGGTACCCGAGCGTGATCTCCATCGCCAGGATGAGTGCCACACGCGCTACCGGAGTGACCCAAACCTGGCACGGTACCCAGTGAAGCCGCAGCCATACGAGGAACAGATGCGTATGCACGCCGAGATGTCACGTTTCCGCCATGAGCGGCGCCACAGCGATGTCTCCCTGGCGTGCACCGAGGCCGAAGAACGGCCCGGTGCCTGGCGTTATGGCCATGTCCACTCCCACGGCCCCTCCTACGGTCACCGGCCCTCCAATCCTGGCCCGCGGGACAAGACGGAGAACCTGCTGCGCAACGACTCGCTTAGTTCAGACCAGTCAGAGTCTGTGCGTCCACCACCACCCAGACCTCATAAAAGCAAGCGAGGAGGCAAAGCAAGGCGTGCCTCACTGAGCAGCTCAGACGAAGAGCTTCCCACCACGCCCGAGTACACCAGCTGCGAGGATGTGGAGATTGAGAGCGAGTCGGTCAGTGAGAAAGGGGACAGTcaaaggggaaaaagagaaactATTGAGCAGGCACACATCTTATCAGAGGGCCAAAAGAAAATGGTGCGCTTTTGGGGCCACTCGTTGGAAGAGGATGCCGAGTGGGGCGAGCCACAGGTTAAAGACTCGGGCGTTGACACATGCAGTAGCACAACGCTAAACGAGGAGCATAGCCATAGCGAGAAGCATCCTGTCACGTGGCAACCTTCCAAAGACGGAGACCGTCTCATCGGCCGCATTTTGCTCAACAAGCGGCTCAAGGATGGAAGCGTTCCTCGTGACTCCGGAGCTCTTCTGGGGCTAAAAGTGGTTGGTGGCAAAATGACTGAGTCTGGTAGACTTTGTGCATTCATCACTAAAGTAAGGAAAGGAAGTTTAGCAGACACTGTGGGACATCTTAGACCAGGTGATCAGGTCTTGGAGTGGAACGGGAGAAACTTACAAGGAGCCACATTTAAAGAAGTTTACAATATCATTTTAGAATCCAAGCCAGAGCCTCAGGTGGAACTGGTGGTGTCTCGACCCATCGGAGACATCCCCAGGATAccagacagcacacacacacaactggaGTCGAGTTCCAGCTCATTTGAGTCGCAGAAGATGGACCGGCCATCCATATCCATCACATCTCCCATGAGCCCCGGCGTTCTGCGAGACGCACCGCAGTACTTATCCGGACAGCTCTCTAGCCAAAGCCTTAGTAGGAGAATAGAGCCTTTTAACCCTAGGGTTCAGGTTAAACTCTGGTACGATAAAGTAGGCCATCAGCTCATTGTCACCATCCTGGGAGCCAAGGACCTGCCGTCGCGAGAAGACGGACGACCAAGGAACCCCTATGTCAAAATCTACTTCCTCCCAGACCGAAGTTTGAATTATTGTTCCACCAGTGACAAAAGCAAGAGGAGAACTAAAACGGTAAAGAAGTCGTTAGAGCCCAAATGGAACCAGACGTTCATGTACTCACCAGTGCATCGGCGTGAGTTTCGCGAACGCATGCTGGAGATTACGCTGTGGGACCAGGCGCGAGTCCGTGAGGAGGAGAGCGAATTCCTCGGAGAGATTCTGATCGAGCTGGAGACAGCGCTGATGGACGACGAGCCGCACTGGTACAAGCTGCAAATGCATGACGTCTCTTCAATGCCTCTGCCCAAGAGTTCCCCCTACCTTCAACGGAGAACGATGCCTGGAGAGAGTCCCACTCGCAGACTACAGACTCACGGCTCGTATTCATACAATTCAGGATCTCACAGGATCAGCGACAGCGAGATCTCCGATTATGACTGTGAGGATGGTGTGGGAGTCATTTCAGACTACAGACAAAATGGGCGGGACCTCCAAAGCTCCACCCTCTCTGTGCCCGAGCAGGTCCTCTCATCCAATCACTGCTCACGGTCAGTGGACATTAACCGAGCACGTTCACGATCACCCAGCGTTCCACCTCCTCAGAGTCATTTTCTCACCCTACCTCGAACAAGACACAGTCAGCCTGTTCATCATCAGCAGATGGAACTCAGGAATTACGGCATGCCGGACAGGCGCGAAATGGAACGGCCCATGTACACGCGCTCACGTTCCACTGAGCGCCCCCCTGATGCCCACCACATGAGATCGTCCATGCCCACGCTGTCATCCGGACACTCTGCGCCGCCCTCGCCCGCCTTAACGAGggcACACCCCCGCAGTGGATCAGTCCAAACTAGTCCTACCAGCACACCAATGAACAGCAGGAGAGGACGGCAGCTACCACAACTGCCCTCTAAGGGGACGCTAGACAGAAaaGACGGACGAGAAGACCTTGAGCCGGGTCCAGGTGCTATGGACATGGAGGAGAGGACACGGCAGATGAAGCTGAAGGTGGAAAAGTATAAGCAGGGAGCAGGCTCCGACTCCCGCCTGGAGAAAGACCACCACTCAAAGCATTCCAGCAGGGACGGGAAACACGGGATGGACAGTCTCTCTGCCAAATCTTCCGACAGCGACGTGAGTGACGTGTCCGCTGTATCGAGAAGCAGCAGTGCCTCTCGCTTCAGCAGCGCGAGCTACATGTCCGTCCAGTCGGAGCGGCCGCGAGGCAACCGCAAGATCAGCAAAACGATGCAGGGGCGGAGCCTCTCCCGGGAGGGGGAGGAACTCTCAGGGGAGGTGTTacacgaggaggaggagggaggggtggGGAATGATTGTGAGAGCGGTCCAAAGGCAAAGACACATAGAGTAGATAGAGAGGCGGAGTCTATTGAGGAAGTGGCCCAGAGGAGGTTCTCAGACAATGACCTCAGCGACTTTGCatccaaaatgaaaaacaggcaAATGGGCATGACAGGTGGCACCAATCTGACCAAGAGCACCAGCATTGGCGGGGATATGTGCAGCCTGGAGAAGACTGACGGCAGCCAATCGGACACGGCCGTGGGCCTGGTGGGCGGAGACCTCAAGAAGAGGCGCTCGAGCATTGGGGCAAAGATGGCCGCCGTGGTGGGCATGTCCCGCAAGAGCCGCAGCACCTCACAACTCAGCCAAACAGAAGCAGGAGGAAAGAAACTGCGTAGCACTGTTCAGAGGAGCACCGAGACAGGCCTGGCTGTGGAAATGAGGAACAGAATGACACGGCAGGCCAGCCGTGAGTCCACTGATGGCAGCATGAacagcttcagctctgaggggaaCCTGATCTTTCCAGGAGTGCGACTCTCTGCAGACAGCCAGTTCAGCGACTTCCTGGATGGACTAGGCCCCGCCCAGTTAGTAGGCAGACAGACTTTGGCTACACCTCCCATGGGCGACATTCAGATCGGAATGGTGGAGAAGAAAGGAGCTCTGGAGGTGGAGGTCATTCGGGCCCGAGGCCTTGTGGGTAAACCAGGCTCTAAGGCACTGCCAGccCCTTATGTGAAGGTGTACCTGCTGGAGAATGGAGCATGCATagccaaaaagaaaacaaaagtagCACGCAAAACCTTGGACCCTCTTTATCAGCAGCAGCTGTCCTTCGAAGAGAGTCCAGGGGGAAAAGTCTTACAAGTCATCGTGTGGGGAGATTACGGCCGAATGGACCACAAATCATTCATGGGCGCCGTACAGATACTTTTAGACGAGCTGGACTTGTCCAACATGGTGATTGGCTGGTTCAAGCTCTTTCCCCCGTCCTCATTGGTGGACCCGACGCTTGCTCCTCTGACTCGAAGAGCATCGCAGACATCTCTGGACAGCAGCTCTGCGCCGTTCAGCCGCTCGTAGCACAGCGCTATCGACTAGCGTGGTTGTTGTAGCATCATCCATCATCACGATGGTGGGAGTTTGAGATTTGAGGCCAGTTGCTGCCCCTCCccagtaacacacactgcatgcttGGTGTTGTCTTCTGAGCCTGTTTCTTAGGGGTGAAAACTAAAAGCGGTCCTGTGTTTgctcgcaaaaaaaaaaaaaatgataatactaataatagataaataaacCTAAAGCCTCGCACATGTTGAGCATGGAGAGCGACCCCTACAGTCGGGGAACAGCCAGACGAAGGAAATGGACCTGTTTTTTGTCCTTTTCGAAGCCATGGGGTTCTACACAAGCCCATATTAACGCTCATTTGTTTCTCTTCCATTATCGTTCATTGTTCGTTTGTATGTGAACGGGTGAAGAGTGTTTCTTGGGTCATGCCATTTAAACAGACCCAGAGTTTGTGATATGGAAATGAGTCCGTATTAAACCGTCTGCACTCCCCAGATATGCACACGATCGCAAGCAAGActgtttatagatttttttttttaaaaaacaaaacaaaaaaaaaaacgcaataCTGAGAAGGTTATCATCAACAGAAAAGAGAAGGTTCAAGATTTCCTGGATGAACGTTTGGAATGGAACGATTTTTCTGTTGATATTGTATGAAGTTTCAAAgggactctttttttttttcttttgcatggACACAAAATTTAGCTGATCtcaaagaaacaaatattttcttGAGATTGCaacttgcagaaaaaaaaggagaaaaaaaatatacgCAAATGAAACAGATCAgccatttttttgaaaatttctattatttttaaagagaaatttaACTAGTGCATGGTTTTCATGGGGAGTGAATGCAATGGcgtgatttaaagaaaaaaaaattaggaatcCTGTTTTATTATCCTAAAGCCTGTGCTAGGGtctatattgtatttttacGGACATTATGATTAAATAAGGACTTTAGAATTTATTTACGTGGAGAGATAAAAAACTCCTGTTCGAGTGaggtaaagaaaatgtaaaatgtattatttatttcattgatTAAGGCGGAAGCCTTACAGAGATAATGTGCAAATTGtacatgtttctttttctctctcttgtcccAGGGTAACTCTTGCTGCTCTTGTCAGATTTTCCCCTCCGATACCGTTTCGACGTTTCCGCAGGGCTGATCATACAGTCTTGCGTTTTGTACTTTATTTGGACTCGATTTGATTTAACAAGCATGTTGAAATGGATTTTCTGCAACATGGCTTGGGCACAGCGTGCAGTAACACAGCATGTTTTGATAAAGatttggaaaggaaaaaaaaaaaaaacagaataacattttttttgcaatttcttGTACAGTGCATGTCAACTATGTTACTTTGGTCCCTGATTGAATTTTAAGAAAATTTGGCTGGGTTTGAACAAAACATTCCACCAATTTTGTccaattttgtttaaaaaaaaaaacaaaagaagggAATTTTATATCCTGGAAACAGATATTTTCCCCCAGTATTCAGGATGAATGATCCCATGGTTGATTTGCAAATGGTTTCCTGCATCTCATGGACAGTTGCAGTATTGCATAGTGCAGTTTTACACACATGACCCTGGAACTGGGACAACATGGACGCTCGCATGACATGAAAACTTGCCACATGATAGAATATAGAAATTTCTAGATTTTCGTCTTCTTGCTTAGTTTTCAGAAAGTtcctttaatatatttttgttattttatttacaagcCAAGaccagttaatttttttattttctattttagtaATTATCAAAACTTTGAGATGACTCTTCTAGGTATAATATCAGAATGGAGCTATACAGAGACATTATTCCTCTTCCATGTAAAGCGAAATCTATTTTGGTGTTCATTCAGtatctttccttttctctaccAAGCTATGTATAGGTCTCTCTGATTTGAcaattgtatatattatatgtcATAAGTTATGgaatttggatttaaaaaaaaaaaaaaaagtaagcagACATCTATAGATAAGATCGCACGGAATTGGGATAATGTCTCACTCGACTAAGACATGTTACACCCTTTTTGAAtgccttctcttttttttctggtacaATGCGTTCATGCCAAGGCTATGTCTTGGTTAAGTATGGTTGAGTACAGAGATTTATGTAAgttatttttcaaattaaacaataaaaaagggATATTACATTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU388102 lncRNA downstream 9382 6083366 ~ 6084649 (-) True G327560
TU388047 lncRNA downstream 255754 5837883 ~ 5838277 (-) True G327508
TU388046 lncRNA downstream 256249 5837489 ~ 5837782 (-) True G327507
TU388044 lncRNA downstream 257725 5836070 ~ 5836306 (-) True G327505
TU387897 lncRNA downstream 354443 5738537 ~ 5739588 (-) True G327362
TU388686 lncRNA upstream 359932 6648296 ~ 6708767 (-) True G328083
TU388687 lncRNA upstream 359932 6648296 ~ 6741046 (-) False G328083
TU388824 lncRNA upstream 743000 7031364 ~ 7032724 (-) True G328215
TU389090 lncRNA upstream 1088523 7376887 ~ 7378436 (-) True G328439
TU389234 lncRNA upstream 1159809 7448173 ~ 7448967 (-) True G328565
XM_034298140.1 mRNA downstream 6223 6085341 ~ 6087808 (-) True LOC113532744
XM_026924617.2 mRNA downstream 115652 5829474 ~ 5978379 (-) True zfpm2a
XM_026924618.2 mRNA downstream 239479 5829474 ~ 5854552 (-) False zfpm2a
XM_026924548.2 mRNA downstream 432357 5605292 ~ 5661674 (-) False oxr1a
XM_026924763.2 mRNA upstream 3165 6291529 ~ 6302176 (-) True dcaf13
XM_026924692.2 mRNA upstream 25160 6313524 ~ 6316258 (-) True zmp:0000000951
XM_034297970.1 mRNA upstream 40807 6329171 ~ 6383588 (-) False arhgap33
XM_034297968.1 mRNA upstream 40807 6329171 ~ 6383587 (-) False arhgap33
XM_026924007.2 mRNA upstream 40807 6329171 ~ 6383587 (-) False arhgap33
XR_003403372.2 other downstream 115652 5829474 ~ 5978379 (-) False zfpm2a
TU388042 other downstream 115763 5876096 ~ 5978268 (-) False zfpm2a
TU387192 other downstream 1116504 4963617 ~ 4977527 (-) False ubr5
TU387191 other downstream 1116578 4963617 ~ 4977453 (-) False ubr5
TU386070 other downstream 2854884 3237701 ~ 3239147 (-) False LOC113532533
trnam-cau_47 other upstream 141496 6429860 ~ 6429932 (-) True trnam-cau_47
TU388974 other upstream 768430 7056794 ~ 7062428 (-) True G328342
TU389089 other upstream 1090416 7378780 ~ 7386306 (-) False sec61b
XR_003404173.1 other upstream 3996470 10284834 ~ 10284937 (-) True LOC113541360
TU391129 other upstream 4234368 10522732 ~ 10523263 (-) True G330185

Expression Profile