RNA id: XM_026924866.2


Basic Information

Item Value
RNA id XM_026924866.2
length 3451
RNA type mRNA
GC content 0.50
exon number 15
gene id rad54b
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8111413 ~ 8133575 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGATTCAGAAAGCTTCGTTTCGCCATCACTCGATTCTCCCATACAGTAGGGTACGGTAGTACAATGCGTCGGCATTTTGGAGAAAACTTGGTTACTTGGCTTCGTTTGATAGGAATAAAATCAATGAACGCAACATTGCCCTCTCCAAGATGTGAGCACGCTTGACGTATCTGTTATTTCAACCTACGGAAACggcattaaaatatatttcagggTCTGTGAAGATTCCCTTTTCACTTGTTCATTCATATGTTATATATGTACTATTCTAGCGGTGTTacttgaactaaaaaaaaaaaattctctccgcggttttttttccttcaaccAATCAAAACCATACACGTCATTTCCGGGGGAAACTGCGCGCATTTTGAGAGGGACGCAGCGGCTGTACAGTGGCTAACAAACtagttacaaaataaataatgactgaATCAACGTAAATACAGACAAAACCCAACAAAACAGGATGCGCAGGTCTGCGGCACCGAGTCAGCTTCTCCACGGCAATGCTGCAAAGAAGCCGCGATTTGTACCTCCTGCCCCGGTGCACACAGGCGCAGTGCTCATCTCGAACCCAGGGCCGGTGCCAACATCCAACGCTGTGCCAACGTCCAGCCCAGGCCTAGTACCAACATCAGCACCTAAACCAGCACCTCGCAATGTCCTTAACAAGGTGCAGAAGAGCTTGTCTGGGAGGACTTTACACACTCCAGCTTTTGCCAAAGTCCCAGCAGAGGGAAAGGCTTTAGCCAGGGTTCTGAGTGCCGTCGCTCaggaagagaggaaggaaaATGGTCCAGAGTCTCCGAGCTTTTCTCTGGAATCAGGGCAGCTCCCAGATTCGCCCTCACCACAACAACCAGATCTACCtagcacacacaccaccaccaagCCAACCGCTCGGTACTACAGTGTAATGTGGTGCAAGGCATCCTCCAGGAAGCACAAGCGCTGGGAAGGTGATGCTGTGCTCGTGGCCACAGGACGCAGCGTCGTCCTCAAAGACATGGAGGGAAGAGATATTGGACGAGGGTCTGGTTACAAAGCATCTGAGCTGGAGAGTCTGTGTGAGGGCCAGACTTTAATGGTAGGAGGGAAGCAGATCGAGGTCATGGGGGTCGTCTCAGATGAAGACTACGCTAAGGGACGTTGTTTTCAAGATGCCATTGTGGAGCTTCCTCTAGAGACGACTGCTAAAGCACCAGTGAGACAACAGAGACCTCAGCTGGCCAAACCTTTTGCCAGACCAGCGCTGAAGGATGCAACTATGAGAGCGTCTGAACCTGAGGGGCCAGTCTGCAAGCCCAGACATGACCCTAACAGCCCAGGAGCCCTTGTGATGCCTCGACCCCCAGCCAATCACCAGTGGCTTTGTAATAAAAATGGACTCCCATTAGTGGACGTGGTGGTGGACCCTCACCTAACAAATCATCTGCGACCTCATCAGAGGGAAGGTGTGGTCTTCCTGTATGAATGCCTCGTGGGAATGAGGTTGGCTGGCCGCTGTGGAGCCATTTTAGCGGATGAGATGGGTTTGGGGAAGAcactgcaatgtgtgtgtgtgttgtggactCTACTGAGGCAGGGGCCTTATGGTGGACGGCCTGTACTGAAGAGAGCGTTGGTGGTTTGCCCCGGTAGCCTGGTGAAAAACTGGGCTGTTGAATTCAACAAATGGCTTGGCAGAGAGAGGATCAGCGTTTACACTGTTGACCAGgacAACCGTGTGGAGGACTTTGTATCCTGTCCCCGGTCTCCTGTGATGGTGATCAGTTATGAGATGCTACTGCGCTCGGTAGACGCCTTAAAGAAGCTGGAGTTTGGTCTGGTCATCTGTGATGAGGGCCATCGGCTTAAAAACAGCAATATCAAGACAGCCGGTGCTCTCACCGCCCTGGCCTGCGAACGACGGGTAATACTTACAGGCACCCCTGTTCAGAATGATCTCCAAGAGTTCTACTCCATTATTGAGTTTGTGAATCCAGGCATTTTGGGAACTTCAGCAGCCTACAGAAAGATTTATGAAGAACCAATCCTCAAATCCCGCCAGCCCACCTGCACTGAGGAGGAGAGGTGCATAGGTGAAGAGCGAGCAGCAGAACTTGCTCGGCTGACCGGTGCATTCACACTACGACGGACTCAGGAGATCATCAACCGTTTCTTACCTGGGCGTCTGGAATGGACGGTGTTCTGCCGTCCCACAGAGCTGCAGGTGCAGCTGTATAATGAGCTGCTCTCTAGCCGACTGGTCAGGGCTTGTTTCACTGCAGCCGgtacacacacgttcacacacagcCCTCACCTTGCCTGTATTAATGCTCTGAAGAAACTGTGCAACCACCCTGGGCTCCTTTACAACACGATAAAGGAGAAGACGACTGATGATTTATATGACAGCCTCGGTGTAGACATTTTTCCTGAGAACTACGCCACTGGAAGTTTTTGTACAGGAGACTCTGGGAAATTGCTGGTGCTTGCAGACCTTTTGGCTGCTATAAAGCATGTCAACTGCAAAGACAAGGTTGTGCTGGTGTCTAATTATACACAGACTCTTGATCTGCTGCAAGACCTCTGTGCTCACCTTGGTTACACCTGGTGTCGGCTTGATGGACAGACACCCGTTGCCCAGCGACAGCGAATTGTAGACTCCTTTAACCGTCCGGACTCctcccacttcctgtttcttctcAGTTCAAAGGCTGGAGGAGTGGGGCTTAATCTTGTTGGTGCCTCCCATCTGGTTTTGTATGATATAGACTGGAACCCAGCTAATGACATACAGGCCATGGCCCGAGTATGGAGAGATGGGCAGAAGAAAACAGTTCACATCTACAGATTTCTAACAACAGGTACCATAGAGGAAAAGATCTACCAGAGACAGGTGAGTAAGCAGGGACTTTCTGGAGCTGTGGTGGACCTCGGCAAAAAGGGTGAGCATATCAACTTCTCAGCCGAGGAGCTGCGTGACCTTTTCACCTTTGACCCCAATACCGACTGCCTCACTCACGACCTGCTTGGCTGCAAGTGCTCAGGGGATGGAAGAATGCCAGGTGTGGTTGAGGACGTAACCATGGTTACAGGGAGGGCGTGTCAGTTGGGTCGCCGTGCTGATGGTGCCGGTGTTCCACAGCGGGTCAGCATGTCTGAGCTAATGCAGTGGAAGCATTTTTCTGGAACCATCCCATCATATGGTGACGTTTACTTGGACCATGCACACAGTCATATCACATATGCCTTCCAGAGCACTACTTCCAAAACCCAAGACACGGCATAAAACACTCCCACACAAACACGAAACATGTAAAAGAGTGGATTTGATGGATGGAATAAATCTAGTGTAATGAATTTATGTAAGTAGTGTAACTGTAAATCTAACAAAGGTTATGTGctgaaaatgtgctgtttttttaaacaagtgtgtattaaagttatattttaatataaa

Function

GO: NA

KEGG:

id description
K10877 RAD54B; DNA repair and recombination protein RAD54B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU389473 lncRNA upstream 5953 8105262 ~ 8105462 (+) True G328750
TU389297 lncRNA upstream 452336 7657141 ~ 7659079 (+) True G328620
TU389095 lncRNA upstream 718967 7392241 ~ 7392448 (+) True G328441
TU389077 lncRNA upstream 737915 7373280 ~ 7373500 (+) True G328427
TU388945 lncRNA upstream 842653 7267734 ~ 7268762 (+) True G328313
TU389477 lncRNA downstream 1505 8135080 ~ 8135455 (+) True G328754
TU389478 lncRNA downstream 1942 8135517 ~ 8136163 (+) True G328755
TU389722 lncRNA downstream 82871 8216446 ~ 8216654 (+) True G328944
TU389774 lncRNA downstream 123950 8257525 ~ 8264036 (+) True G328995
TU389833 lncRNA downstream 202777 8336352 ~ 8336582 (+) True G329042
XM_026924322.2 mRNA upstream 15906 8072467 ~ 8095509 (+) True virma
XM_026924323.2 mRNA upstream 15906 8072467 ~ 8095509 (+) False virma
XM_026924476.2 mRNA upstream 66190 8009901 ~ 8045225 (+) True epb41l4b
XM_026924477.2 mRNA upstream 66190 8010540 ~ 8045225 (+) False epb41l4b
XM_026924475.2 mRNA upstream 101645 7971618 ~ 8009770 (+) True ptpn3
XM_026924274.2 mRNA downstream 6507 8140082 ~ 8156293 (+) True cdh17
XM_026923985.2 mRNA downstream 50517 8184092 ~ 8190259 (+) True LOC113532572
XM_026924837.2 mRNA downstream 62666 8196241 ~ 8214829 (+) True LOC113533036
XM_026924062.2 mRNA downstream 84965 8218540 ~ 8250823 (+) True LOC113532619
XM_026924063.2 mRNA downstream 84965 8218540 ~ 8250823 (+) False LOC113532619
TU389428 other upstream 208807 7901792 ~ 7902608 (+) False LOC113532663
TU387482 other upstream 2773164 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 3181261 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 3187734 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 4097877 4011410 ~ 4013538 (+) False hamp
XR_004576973.1 other downstream 254612 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 481498 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 635170 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 635171 8768746 ~ 8819267 (+) False LOC113532648
TU390118 other downstream 719753 8853328 ~ 8856276 (+) False bmp6

Expression Profile