RNA id: XM_026924869.2


Basic Information

Item Value
RNA id XM_026924869.2
length 2374
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC113533047
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8115550 ~ 8120900 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctacacgcGAGTCAGAAGGCTGGATTTGCACACTGCTTTACTTGTACTGATGGACCTACAGTAAATCAGATGGAGCAGTGCAGTCTTTGCGAGGGTTATTCAGTAATATAGTGGTGTTTTGttaatgattatgattatgaagCGTGTTATTGATGGATCTCTCTACACTGCTCTAAGTCCAGCTCTTCCTACCACACTAAACTGGCATGTAGAAAAGCGTTAATAAGAGGAAACGCTGTAGCCACAAATAATAATCGATCGGATCTAATCTAAGGCATTTACCTACGAAAACACGTTCGAGCCTGAAATCTAAAGCTACATCCAGAACAAACCTAACGTTTGCACTGAACTGGCTCCGGTTTGGACATGAACTACTCTGCCTCCTATTGTGCCCGCCCCTTGAGGGAAATGAACCAATCAGCACGCGGGATACATTTGATTGACACCCCGCTGACTGAACGGATTCCAAAGCAGAGCTCAAGCACTAGAAAGCGGCTCTCCTGAGACTTCCTCTTGAAATTAGAAGCAACTGGTGTTTCTTTTTGCACATGGCGTTGTTATAGTTGTCACACAATCATGTAACGAGGGAAATATTGGATTATGAATGGAAATCCAGCGGTTAATTCAATCATGGAGCttcaaaacatttaataacGCGACTCTctggctgcgtcccaaaccgcatCCTACCGCACTAAATAGTATGTAGTGTTAATACTGGGTTTATCCGTCTGTCCTCTTCggcttgtggggaaaaaaatggccgCTAAAAGTGCAACGCATTTTGTCGTGATTTTTAAGCCTTTATTTAGTTCTTTCTAATCAAAAGCAGTTTTATATCGATGTCTCCTTTGCCATAAGAGAgactcatttttttctgttgtaatGCACTTGGGTTTGTTATGTAGGTCAGGCCAGGCTTAAGCAGCTTTACTGAACCTGCGTCAGCTTAAGCTGAAAGGAATTTGAGCAGAGCCCTCCCCTATAGGCGTGGGCCTAATCGAGGCTGGCCTAGTtaagcctgatttttttttttcccccctcacgTTTCTTTgcgtggagtgtgtgtggctgtgtaaCAGAACCAGCACAGAAACTCACACACGTGCAAGTGTTTgcaagagaaagacaaacagacagatagtgCAAGGGCAAAAAAGCCAGGGAGAAGAGACTAGTGGAAAGAGGTGAAGAAAACAAGCAGAGCTTAGAGCAACCAGGATCAGCTTAGAACCAAGATGTCTGCATTGTTTATGACAAGCAGCATGGTGGGCAAGGCACGCTCTTCAAACTTTACTCTGTCTGAGAAACTGGACCTGCTGCGCCTGGTTCAGCCGCACATCCGCATTTTGGAGGAGCACACAAACAAGCATGCCGTGATTGTGGACAAGAACCGGTGCTGGGAGAGCATAGCCGAGCGCTACAACAGCCTGGGAGGAGAGAGGCCGCCCCGGACGGCACAGGGGCTCCGGACCCTGTACAAACGACTCAAAGAGAGTGCCAAACAAGAAGTGGTCCAGCGGAGCCACGCCCAGCCTGAGTATCGGGGCAGCATCTCAGAACCAACCAAACGGATCATGGAGATGATCCCACATCTGTTTCACGCAGGGGACAAAGAGCACAACACGCTCCACAGGTTGCAATACAAGATGAACTCTCCAGTCGAGCAACCCGGCAGCAGTTCGTCTCTTCCTGCCATGCCGGACTACACACCCGCGGCCAGAGCGGTGAGGGTGGAGTCAGAGGATGTCAAACCTCCACCTGATCTCCAAATTGTAGTCCCGCACGATTCACCTGTTACATTAACAGCTCCACACAGTCAGGAACCCATTGCACAGACCGAGAAtgaagtggaggaggaggaagaggaggaagaactAGTCTCGAACGTTTATGCGGCCTCCCTCTCCCCTTGCCCCTCCTCTGTGCATCTCCCTCCATCACCTTCAGCACCCGCATCCAGACGCAGCCTGTACGAGAGGGGCGGTGTTTTGTTTAGAAACCCTGCACTGGAGGCGGAGTCTTTGCAGATGATGCGAGAGGAGCATGAGCTTTTACTGGCCAATCACAGGAAGCTTGGACAATATCTAGATGAGAAAAGAGAGGGGCTAAAAAGAAAGCAACAGTTGGAGGAGGAGCTcttgaggtcaaaggtcaaagtgGAGAAACTAAGGGCTGCGCGGCTACGCCATGGACTTCccctaatgtaaaaaaaacacacaaaaaagtagtGTAAAGACGGTAACACTGCTGGCATGTACAGTTTTACAAATGactattttatttgatttactttttctgtctgtagaagaagtaaatattttaactatCTGTGAATATGAGACAGACATGATTGTATTTTGTTGCAATAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU389473 lncRNA upstream 10088 8105262 ~ 8105462 (+) True G328750
TU389297 lncRNA upstream 456471 7657141 ~ 7659079 (+) True G328620
TU389095 lncRNA upstream 723102 7392241 ~ 7392448 (+) True G328441
TU389077 lncRNA upstream 742050 7373280 ~ 7373500 (+) True G328427
TU388945 lncRNA upstream 846788 7267734 ~ 7268762 (+) True G328313
TU389477 lncRNA downstream 14180 8135080 ~ 8135455 (+) True G328754
TU389478 lncRNA downstream 14617 8135517 ~ 8136163 (+) True G328755
TU389722 lncRNA downstream 95546 8216446 ~ 8216654 (+) True G328944
TU389774 lncRNA downstream 136625 8257525 ~ 8264036 (+) True G328995
TU389833 lncRNA downstream 215452 8336352 ~ 8336582 (+) True G329042
XM_026924322.2 mRNA upstream 20041 8072467 ~ 8095509 (+) True virma
XM_026924323.2 mRNA upstream 20041 8072467 ~ 8095509 (+) False virma
XM_026924476.2 mRNA upstream 70325 8009901 ~ 8045225 (+) True epb41l4b
XM_026924477.2 mRNA upstream 70325 8010540 ~ 8045225 (+) False epb41l4b
XM_026924475.2 mRNA upstream 105780 7971618 ~ 8009770 (+) True ptpn3
XM_026924274.2 mRNA downstream 19182 8140082 ~ 8156293 (+) True cdh17
XM_026923985.2 mRNA downstream 63192 8184092 ~ 8190259 (+) True LOC113532572
XM_026924837.2 mRNA downstream 75341 8196241 ~ 8214829 (+) True LOC113533036
XM_026924062.2 mRNA downstream 97640 8218540 ~ 8250823 (+) True LOC113532619
XM_026924063.2 mRNA downstream 97640 8218540 ~ 8250823 (+) False LOC113532619
TU389428 other upstream 212942 7901792 ~ 7902608 (+) False LOC113532663
TU387482 other upstream 2777299 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 3185396 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 3191869 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 4102012 4011410 ~ 4013538 (+) False hamp
XR_004576973.1 other downstream 267287 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 494173 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 647845 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 647846 8768746 ~ 8819267 (+) False LOC113532648
TU390118 other downstream 732428 8853328 ~ 8856276 (+) False bmp6

Expression Profile