Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026924873.2 |
| length | 1009 |
| RNA type | mRNA |
| GC content | 0.53 |
| exon number | 4 |
| gene id | cthrc1b |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 2656902 ~ 2668209 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0005581 | collagen trimer | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU385878 | lncRNA | downstream | 58323 | 2597279 ~ 2598579 (-) | True | G325616 |
| TU385609 | lncRNA | downstream | 256312 | 2400317 ~ 2400590 (-) | True | G325373 |
| TU385602 | lncRNA | downstream | 269344 | 2387309 ~ 2387558 (-) | True | G325366 |
| TU385578 | lncRNA | downstream | 284100 | 2348305 ~ 2372802 (-) | True | G325343 |
| TU385576 | lncRNA | downstream | 307320 | 2348305 ~ 2349582 (-) | False | G325343 |
| TU386067 | lncRNA | upstream | 507551 | 3175760 ~ 3240764 (-) | True | G325774 |
| TU386072 | lncRNA | upstream | 526634 | 3194843 ~ 3214451 (-) | True | G325778 |
| TU386073 | lncRNA | upstream | 531018 | 3199227 ~ 3201250 (-) | True | G325779 |
| TU386074 | lncRNA | upstream | 540997 | 3209206 ~ 3237328 (-) | True | G325780 |
| TU386063 | lncRNA | upstream | 561812 | 3230021 ~ 3251447 (-) | True | LOC113532533 |
| XM_034297893.1 | mRNA | downstream | 9428 | 2627651 ~ 2647474 (-) | True | sept7b |
| XM_034297891.1 | mRNA | downstream | 9428 | 2630018 ~ 2647474 (-) | False | sept7b |
| XM_034297892.1 | mRNA | downstream | 9450 | 2630018 ~ 2647452 (-) | False | sept7b |
| XM_026923901.2 | mRNA | downstream | 30487 | 2616424 ~ 2626415 (-) | True | si:dkey-256h2.1 |
| XM_026924425.2 | mRNA | downstream | 45590 | 2607702 ~ 2611312 (-) | False | LOC113532793 |
| XM_026924403.2 | mRNA | upstream | 12128 | 2680337 ~ 2918894 (-) | True | csmd3a |
| XM_034297833.1 | mRNA | upstream | 368185 | 3036394 ~ 3045887 (-) | True | LOC117595760 |
| XM_026923962.2 | mRNA | upstream | 443233 | 3111442 ~ 3140099 (-) | True | eif3ha |
| XM_026924865.2 | mRNA | upstream | 472858 | 3141067 ~ 3150751 (-) | True | rad21a |
| XM_026924253.2 | mRNA | upstream | 491263 | 3159472 ~ 3213627 (-) | False | ext1a |
| TU385328 | other | downstream | 559467 | 2088259 ~ 2097435 (-) | True | G325145 |
| TU384835 | other | downstream | 1206186 | 1429932 ~ 1450716 (-) | False | kif13a |
| TU384829 | other | downstream | 1285873 | 1370476 ~ 1371029 (-) | True | G324748 |
| XR_004576952.1 | other | downstream | 1554785 | 1047583 ~ 1102117 (-) | True | nek11 |
| TU384611 | other | downstream | 1929268 | 726627 ~ 727634 (-) | True | G324579 |
| TU386070 | other | upstream | 569492 | 3237701 ~ 3239147 (-) | False | LOC113532533 |
| TU387191 | other | upstream | 2295408 | 4963617 ~ 4977453 (-) | False | ubr5 |
| TU387192 | other | upstream | 2295408 | 4963617 ~ 4977527 (-) | False | ubr5 |
| XR_003403372.2 | other | upstream | 3161265 | 5829474 ~ 5978379 (-) | False | zfpm2a |
| TU388042 | other | upstream | 3207887 | 5876096 ~ 5978268 (-) | False | zfpm2a |
