RNA id: TCONS_00008068


Basic Information

Item Value
RNA id TCONS_00008068
length 3794
RNA type mRNA
GC content 0.46
exon number 5
gene id XLOC_004213
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 31218956 ~ 31234584 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCCATCCGCCATATAATTTGACCCCATTAGAGCGACGTGATGGACATATTTTGGAGGCGTTTAGCAGCAGCGCTCGTCCTCCAGTGCGCCATGCAGAGTTGAGTTGGCATGCAGAGCGCGTAGCACCCACAACCCTCTGGGGCTTCACCTGAGTCTAGACGCTCCGCACGGCGCACTTTCCCCGCACTGCCGCACGCACAACCCTATACACAGCCGGCTGAATGCGTCGGCTGTCGGACTGCTTTTGCTCGTGTGATCGGTGACTCTGCGCTCCAGCCGGGGGTGACAAAACGATGCACCCCTCGATAATTCTGCGCTCGGGCGTCTTGCCTGTGCATTCACGATGAATGGCTGCCCGTAGAGAGAAAGAGTCGGACTCCTCCATTGAAACACTTTCCAGCAGATTGCAAGCGAGGGGACTCTGTAGTGCTGGGCTTTACGATATGGCTCAGATGCTGCAGATGGCGATTCCCAACTTTGGCAACAATATCTTGGAGTGTCTTAATGAGCAGAGGCTTCAGGGACTGTACTGTGATGTGTCAGTTGTGGTGAAGGGACACACATTTAAAGCCCACCGGGCAGTGCTGGCTGCCAGCAGCTCCTATTTTCGAGATTTGTTCAACTCTGGAAGCAAGAGCTCTGTGGTGGAATTACCGCCAGCGGTCCAACCTCAGAGCTTCCAGCAGATCCTTTCCTTCTGCTACACCGGTCGACTTAGCATGAATTTAGGCGATCAGTTCCTCCTAATGTACACAGCGGGATTCCTGCAGATTCAGCAAATTATGGAAAAAGGTACAGAGTTCTTCCTAAAGGTCAGCTCGCCAAGTTGTGACTCGCAGGGTCTTCACACAGAAGATGCGCCACCTTCAGAACCCCAAAGTCCTGTTACCCAAACTGGGACTGGCTCTATAGGTATGGGTGGGTCAACAGCAGCTCGACCTGCATCCTGCCAAACACCACTTCCATTAGTGTCAAGAGTTAAGACGGAGCAGCTACCACAGGCCCCTCAGCCACTTCAAGAAGCATCATCATATTCGGTAGTTTGCACTCCAGTTGCTAAGCGCCTTTGGGAAGGAGGCAACCGTGAAGGAGGTGGAGGATCAGGAGGAAGTGGAGGTGGAGGTGTGAGAAAAGCAGCACGTTATTCGCAGGAAGTGGTACGAAGTGTGGGCGGGGCACAGCCTCAAAGCATCGCTTTATTGGGCGGAAGTGGCACAACTAAtagcaacagcaacaacaataataacaacaacagcagtaGCACGCCGGAAGGCACCAGCCCAGGAACTCCCAGCATGTACACCAGTGACTCGCCAATCTCTTaccatgatgatgatgaagaggaggaaatCCCGGATGAAACGACAGAAGAACAGTACAGACAGATCTGTAATATGTACACTATGTACAGCATGCTGAATGTAGGGGCAACTGCTAACGAACGAGTGGAATCACTTCCAGACCACCTCACCGTTGAATCAAGAGGAAGAGGAGTTCGAGTGAGGCAAGATCTGGCTTCTCTTCCCACTGAGCTCATTGCACAGATCGGAAACCGCTGTCATCCTAAACTGTATGAAGAAGGTGACCCTGCTGAGAAACTGGAGCTAGTAACAGGCACCAGTGTTTTTATTTCACGTGCTCAGCTGATGAACTGCCACGTTAGTGCGGGCACACGCCACAAAGTGTTGCTCCGGCGGCTCCTGGCTGCCTTTTTTGACCGAAGCACTCTTGCAAACAGCTGTGGTACAGGCATTCGTTCCTCCACCAACGACCCAAATCGCAAGCCCCTCGACAGTCGGGTTCTTCACGCTGTTAAGTTTTACTGCCAGAACTTTGCTCCCAGTTTCAAAGAGAGCGAAATGAACGCAATCGCTGCAGACATGTGCACGAACGCACGGCGCGTGGTCCGCAAGAGCTGGATTCCCAAACTAAAGCTTCTAATGGCAGAAAGCGACGCTTACGCCAACTTCCTTTCAGACGCCGCCAAACTGGAGTCTGACGGCTTGGGAGTGGAGAATGCTTTTGAAACGGGATCCCTGGAAGGTGGTCCAGCCTCTGAATCAGGCCAGTCATCTGCAGATGCCCTGCACGGCGTTAGCGGGGATGGTAGCAGCTTGTTTTAGTGAGTAACACTAACCATGGTTCAGCTATTCTTTCCCTTCTCCACTCCTCCAATGCATCCCAGTCTCACTTTGGCCGTTGTTATCAGGGAATCGCCATGTGTATCTTTAAGAAGACCGTTATTGAGTTTGATTTCCAAAAAGCTGGTAGTTTTTATGTTTTGATTGTACCTTGAAGGCTCTCCTCTTCATACTGCAGAAATACATTCCTGAAGAGAAGGGACCTATGGGAACATTTAAGGGTGAACCCAAGGGGAAATGGTGTCTGGAAGCGTCTATTCAGTGTACAAACACTGTCATGATTCTGAATGTATCTTTTTATGGAGAATGCAGAGAGTGAATATTGCTGGACGTCAGATTGTATTCATCTGTTAATATTTAATAGCTGTGTATTTGCTTCCTGGACTCCATTTCCTCTTTTAAACAccctttaatgttttgtttttctgtttttatttgtaatttttggcCAAACTGTTCCTTCATTTGTCTTGCCAAGTATCCCGAGAGAGGAAGTTTGTATTGATTGTTCTGAATTTGTATGAGGCAGATGAATCTGTTTTGGTATATCTGAAACTACTGTTGTGTTTTGATAGAGAGAGACTGAAGATTCTCGCCCTTTGAATCAATGAATTCGAAATAGCTATCCATGTGTTTTTGCGTTAGCGAAATCCAAGATTATTTCAGCCTTTTTATTTTGGTATATTACCAAAGCTTAAAATTGGTTTTGTTAAATCAAATCTGGAAGTTTTTAATGTCAAAGCGAATCCCAAAAGCTTTAACAATAGTCTTTATTTCCTTAGTAGTTTTGTATAGATGACGCAGGACTGGCATTGCgctgtataaatgtgtgtatggcGACTGCAGATGGTAGTTTTGATGCAGCTGACTGCTTCATGCACCTTTGGCAGGAGTGTGGTGCATGATGCTGCATTCTGACATGCTACGCCTCAGCGCCTTTGACAGAGATGCACTAAATGCTCTGATGAAGTGGGCCGAGTGCAGTATTAGAGATTGGCACTGAACAGGCATCGGTGTCACAGCTATTGTGGTTCTAAACCACTAAAACCACTCTGAGAGTGGAAGCTGTTTTATAggcttttttaaaagttttttttttttttttagtttttaagtaTGTCAAAAGGAGAAGTTCTTGAAGTCTCTAAATAAAGAGATGTTTTAACCCCAGACTTCAAGAAAGCATGTTGTTGCACCCCTGAAATATTTGGGGATGCGTTAAAATTTGATTCCCAAAGTATGACCTGTCTCTTCAGGTGTTTTAAGCACACTTatattttgtttgaatatttGATCATGGCTGAAGAATGGCATAATATACAAAATTGTTAGAACCTAAATGCTCAATTATTAGCACAAAAGTGGGTTGTAAGAGTTAACGTTTtatgttttttactttaaagtagtagttcaccccaaaaacaCCCAAGTTCAGTTGGAGTTTCATTTTACAGTTACTCATGCAAATATTTTCATGCTGAGAAACTACTTTGAAGCTACTTTGCATGCACAAAAAATCTAAAGTGTAGAAGCTAAGAATATTGGTATCCAAACAGTTTTCTTAACACCTGCAACGTTTACAtgtacatcagtaatcaaattgtttGCCTTACTCTGAatgagacaataatatgattaagttgTTGACATGA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121212-1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human NACC1 (nucleus accumbens associated 1).

Ensembl:

ensembl_id ENSDART00000170700

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008813 lncRNA downstream 7648 31204925 ~ 31211308 (-) True XLOC_004212
TCONS_00008812 lncRNA downstream 16117 31200219 ~ 31202839 (-) True XLOC_004211
TCONS_00008053 lncRNA downstream 854151 30361628 ~ 30364805 (-) True XLOC_004204
TCONS_00008040 lncRNA downstream 1257055 29961114 ~ 29961901 (-) True XLOC_004198
TCONS_00008036 lncRNA downstream 1297954 29918315 ~ 29921002 (-) False XLOC_004197
TCONS_00008814 lncRNA upstream 915634 32150218 ~ 32157526 (-) False XLOC_004216
TCONS_00008815 lncRNA upstream 920370 32154954 ~ 32156318 (-) True XLOC_004216
TCONS_00008816 lncRNA upstream 1131328 32365912 ~ 32391388 (-) True XLOC_004217
TCONS_00008817 lncRNA upstream 1222732 32457316 ~ 32563702 (-) False XLOC_004218
TCONS_00008818 lncRNA upstream 1232600 32467184 ~ 32538409 (-) False XLOC_004218
TCONS_00008066 mRNA downstream 46680 31168697 ~ 31172276 (-) False XLOC_004210
TCONS_00008065 mRNA downstream 72148 31144720 ~ 31146808 (-) True XLOC_004209
TCONS_00008064 mRNA downstream 179423 31038409 ~ 31039533 (-) True XLOC_004208
TCONS_00008063 mRNA downstream 582793 30630905 ~ 30636163 (-) True XLOC_004207
TCONS_00008061 mRNA downstream 584670 30626768 ~ 30634286 (-) False XLOC_004207
TCONS_00008070 mRNA upstream 23532 31258116 ~ 31276080 (-) False XLOC_004214
TCONS_00008071 mRNA upstream 38065 31272649 ~ 31276064 (-) True XLOC_004214
TCONS_00008072 mRNA upstream 634436 31869020 ~ 31872628 (-) True XLOC_004215
TCONS_00008074 mRNA upstream 1341716 32576300 ~ 32723851 (-) True XLOC_004220
TCONS_00008079 mRNA upstream 2363629 33598213 ~ 33612433 (-) False XLOC_004228
TCONS_00008067 other downstream 46702 31170349 ~ 31172254 (-) True XLOC_004210
TCONS_00008056 other downstream 710165 30424226 ~ 30508791 (-) True XLOC_004205
TCONS_00008052 other downstream 854132 30358109 ~ 30364824 (-) False XLOC_004204
TCONS_00008048 other downstream 1063121 30153818 ~ 30155835 (-) True XLOC_004201
TCONS_00008043 other downstream 1117699 30101142 ~ 30101257 (-) True XLOC_004200
TCONS_00008075 other upstream 1496581 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008078 other upstream 2136667 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008088 other upstream 2731574 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008102 other upstream 3120960 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008105 other upstream 3231811 34466395 ~ 34466513 (-) True XLOC_004247

Expression Profile

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