RNA id: XM_026924920.2


Basic Information

Item Value
RNA id XM_026924920.2
length 1410
RNA type mRNA
GC content 0.48
exon number 6
gene id si:dkeyp-97a10.2
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4294369 ~ 4303530 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTTTCCACCGCGCCTGTGATTGTGTTGCTCTCAGGCGGAATGTGCCTCAGCAGTCCGGCTGATTATGGAAATGTTACGCTTTTGAACCTTCCTGCCAAATTTAATGCACtggttttggttttttgttttggttttttccAAAGAAGAATTTTTGCCAGCCGTTTGGACCTCCTTGGCCACTCCAGACAGctaGCATGGACCTTGGATCACAGTTTTTCTGGGCCAGCATCCTGTTACAAGCATTTGTTCTCCCGAGCTGCCTCTGTGTTTCGGTTCGTTTCCCGAGCCAGCAGACCGTCTATGTGGTGAGCGGGCAGAATTTGGTCCTGCAGGCTGAGTTCGAGTTGCCTCAGGGAGATCACATCACCAAGGTCACATGGGAGCACGAAGTTGAGGGAAGAAGAAATTCTGGAAAAACTACAGTGGCTGAATATCCTGCTAAAAGCTCCGGAGGCCGGGTGACTGTAGACAAGGGCGGGTCTGTGATGACGTTACGGAACTACCAGAGAACGGACAACGGCGTGTACACGGTCACCGTCCGAGACCAGAAAGGAGGTCAAAGTTCAGCACACTGCACTGTCCACGAGTACGaggCCGTGCACCACGTGTCAGTGATGGTGAACGTGTCGCACTCCAGCCTGCACTGCATGGAGGCCTGGGGGACGGAGCCTGTCTTCCGTTGGCTCCATGAGAAAGCCGCAGTGACGGAGGCAGTGGGCCGTGTGTCAGCCGATGGCACCTCTCTGTACCTGAACACAGCGCTGTGTGGCCACTTCACCTGCATGGTGAGCAACAAGCTGGGCCACAGCTCGGCCACCTACACCGCAGtgccctgtgagagagagagcagaggtaCTGCTGTAGCTGTTGTATGTCTCATGTTCTTGCTACTCTTGGCTGGAGGTTTGGCCTTCCTGCTCTGGAGGAAACGCATTagttacagcagcagaggagagagaCTCCGAGAACCAGACGAAGACATTTAACCTCCACTTGAGTCTTCGTGTCCGACTGAACCAAAATGGAAGAGACATGAACTTAGACTCTGAGGGATCAGTCGCCTCTTTTCCAAGCACTCCAACCATTaagaaacatttcaaacattctACAGGGGTTTCACTGGCTTTTAGTCACAGTTGaacaagtgaagtgaagtgaagttcTCTTTTTAAAGGACCTTGACGAAGAAAAGAAAGCTGACGGTTGAGCAACTGTTTGAAGCTTTGAAAAAAGGAACATGTACAGCTTACTTTATTTCCTGTGGGTTATACTGTTTGTTTTCCAGACctgtttgcatttcattttaaatacttcaaaataaataaataaatacgattccaaaatataaataaataataaataaataaatgtataaactgtatacatacacattactGTACAATAAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386524 lncRNA upstream 321368 3967532 ~ 3973002 (+) True G326193
TU386508 lncRNA upstream 348237 3945382 ~ 3946133 (+) True G326178
TU386457 lncRNA upstream 413429 3880677 ~ 3880941 (+) True G326131
TU386344 lncRNA upstream 592217 3701334 ~ 3702153 (+) True G326023
TU386119 lncRNA upstream 972040 3319917 ~ 3322330 (+) True G325815
TU386648 lncRNA downstream 15686 4319215 ~ 4359118 (+) True G326288
TU386632 lncRNA downstream 45252 4348781 ~ 4351847 (+) True G326281
TU386679 lncRNA downstream 88055 4391584 ~ 4394784 (+) False hmgn2
TU386681 lncRNA downstream 95149 4398678 ~ 4406561 (+) False LOC113532991
XR_004576935.1 lncRNA downstream 162979 4466508 ~ 4468850 (+) True LOC117595758
XM_034297819.1 mRNA upstream 6140 4283288 ~ 4288230 (+) False LOC113532664
XM_034297820.1 mRNA upstream 6140 4283659 ~ 4288230 (+) True LOC113532664
XM_026924156.2 mRNA upstream 6140 4284199 ~ 4288230 (+) False LOC113532664
XM_026924409.2 mRNA upstream 87851 4070056 ~ 4206519 (+) True iglon5
XM_026924670.2 mRNA upstream 280839 4011380 ~ 4013531 (+) True hamp
XM_034298281.1 mRNA downstream 74494 4378023 ~ 4389461 (+) True dhdds
XM_026923895.2 mRNA downstream 87991 4391520 ~ 4394784 (+) True hmgn2
XM_026923894.2 mRNA downstream 88000 4391529 ~ 4394778 (+) False hmgn2
XM_034298293.1 mRNA downstream 95130 4398659 ~ 4434251 (+) False LOC113532991
XM_034298292.1 mRNA downstream 95137 4398666 ~ 4434251 (+) True LOC113532991
TU386582 other upstream 280832 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 1724631 2565700 ~ 2569739 (+) False G325435
XR_003403389.2 other upstream 2080071 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other upstream 2080109 2210222 ~ 2214261 (+) False LOC113533074
TU385279 other upstream 2149859 2142506 ~ 2144511 (+) False bola1
TU386810 other downstream 617451 4920980 ~ 4923681 (+) True fabp10a
TU386814 other downstream 621257 4924786 ~ 4930154 (+) True srsf10a
TU387482 other downstream 1028739 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 3598263 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 4084658 8388187 ~ 8484833 (+) False LOC113532774

Expression Profile