RNA id: XM_026924966.2


Basic Information

Item Value
RNA id XM_026924966.2
length 1673
RNA type mRNA
GC content 0.44
exon number 4
gene id eef1e1
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9400242 ~ 9415382 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGCACAGAACTAGTTCACAAAATGGATGATGCAATTATTTGTTAGTCGTGGGTTTAGCAGCATTAAGCCGTCTGTCATCAGATCACGCCTCTTTTCCGCCCTCGCTCGCGACACTCGGCTGTCAGGCCTGGCTGGGGGTGTGGCCGAACCGTTTCCACCAATCAGCGACCGCGTGCTGCTTTCCTCGTGCGGCAAGATGGCGTTGAGAGAGCTCTCTTCGTTGGAGAAATTTCTGGGATTGAAAAAGCTGAATAAATACAGTACGCAAGGACAAAGAAAGGTCCCTGTTCTCCAGAACAACAGTGGTCCATCTTTGGTTGGTTTGGCCACCATCAGCTCCCACCTGGTACATGAGGCTAAAAGAAAAGAGCTGCTGGGAGATTCAGCTGAGCAGAGAGCTGTTGTCCAGCAGTGGCTGGAGTATCGATTGACTCGACTTGATAACTGCTCTAAAGATGAGATCAAGATTATACTCAAGGAACTTAATCAGTACCTGGTGGATAAAGTGTATCTGGCTGGAAACTGGATCACTCTGGCAGATGTGCTGATGTACTATGGCATCCACCACATCATTATGGAGCTTGCAGTACAGCAGAAAGAAAAGTACTTGAACGTGACCCGATGGTTTGATCACATCCAACACTATCCAGGAGTGCGTCATCACCTGCCGCCTGTGGTAGTTCTGAGGAACAGAGTTTACCCGAGCGGTCACCACTGACCTCTTTCTGTTGGCCTTTTCCTAATGGGTAATGCATGGGACAAGACAAACAAATGGTTCTGACTGAgttgttgtgggtttttttttttccccctgtttgtgtttatgcacGAGCTGGGCAGTGAGGAAGCATGTAGTtcctttttccacatttaacCTGTGTAATTTTAGGCAACTATATTTATAAGGAGTATACTACATAAGTATGAAGAATGAAGCAAAGGAAAAATACACATGCAGCTAGTTGAGCCAGCCAGACTCATGCCAGAGGATGTGCAGTATTCCGAtctattttaagttttattttagctccctttatttattttctctttccttgTTTTAGGCTATTCAGTTTTCTCCTGCTCGTCATCATTTTCTCTCTGAGCTGCAGTAATAGTAGTTGTGTGGGCAGTGTACAGTGCTTAGCCTGGCATGCTGAGTTTGTGCTCTGGGGCAGAGGGCAGGCTACCAGCTGCAGCAGGCAAACCAGTGCCAATGCTGCTTCCTCTCCTCAGCATCTCCACAGCCAGTTGCCGAGAGTGACTGCAcgttatttcatcatttcaccCACAGTCTCCCACCCTGAGCTGGAAAATCCTATCATGGCACAGAAGTGGGCTTTCAGCTCGATCCAAATGATTACCAGCCGAAACACTAACAATATCACAgatttgagcatttcagaattgtatattgttatttttttattgtaataagGTGTTTGTTTAAGGAACTGTCACGCATGTCctctgtaaatgaaaaaaatggtaatTGGGGGGGTTTAGAGATAAGATTGCTTGTTTGTGCcacatttctgaaaaatgtttcttgcttttttttttttttttttttaagttagtaTGCACAAAGAGCAGAGTTCATTTCTGCTCTGTGTGCATATACTTTGTCTTGTGCcaataaagaaaagagaaatcaaAATTTTCATGTCTTCTA

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K15439 EEF1E1, AIMP3; eukaryotic translation elongation factor 1 epsilon-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390393 lncRNA upstream 47509 9352150 ~ 9352733 (+) True G329522
TU390394 lncRNA upstream 64434 9335186 ~ 9335808 (+) True G329523
TU390202 lncRNA upstream 426655 8973237 ~ 8973587 (+) True G329361
TU390192 lncRNA upstream 454686 8942878 ~ 8945556 (+) True G329354
TU390105 lncRNA upstream 651209 8748820 ~ 8749033 (+) True G329288
XR_004576957.1 lncRNA downstream 57234 9472616 ~ 9482817 (+) True LOC117595781
TU390448 lncRNA downstream 64957 9480339 ~ 9480553 (+) True G329574
TU390455 lncRNA downstream 75892 9491274 ~ 9491545 (+) True G329581
TU390437 lncRNA downstream 150311 9565693 ~ 9568672 (+) True G329564
TU390569 lncRNA downstream 160007 9575389 ~ 9575704 (+) True G329685
XM_026924663.2 mRNA upstream 50736 9333115 ~ 9349506 (+) False slc35b3
XM_026924664.2 mRNA upstream 50736 9333489 ~ 9349506 (+) True slc35b3
XM_026924687.2 mRNA upstream 212166 9082979 ~ 9188076 (+) True ofcc1
XM_026923884.2 mRNA upstream 395022 8993786 ~ 9005220 (+) False tfap2a
XM_026923980.2 mRNA downstream 22916 9438298 ~ 9451343 (+) False tmem14ca
XM_026923979.2 mRNA downstream 22918 9438300 ~ 9451343 (+) True tmem14ca
XM_026923983.2 mRNA downstream 32586 9447968 ~ 9451343 (+) False tmem14ca
XM_034298005.1 mRNA downstream 32753 9448135 ~ 9451343 (+) False tmem14ca
XM_034298194.1 mRNA downstream 95226 9510608 ~ 9562189 (+) False sycp2l
TU390118 other upstream 543966 8853328 ~ 8856276 (+) False bmp6
XR_004576948.1 other upstream 580975 8768746 ~ 8819267 (+) False LOC113532648
XR_004576949.1 other upstream 584682 8768745 ~ 8815560 (+) False LOC113532648
TU389909 other upstream 734406 8615073 ~ 8665836 (+) False G329111
XR_004576973.1 other upstream 915409 8388187 ~ 8484833 (+) False LOC113532774
TU390686 other downstream 376302 9791684 ~ 9792733 (+) True G329779
TU390970 other downstream 1015951 10431333 ~ 10432864 (+) True G330038
TU390999 other downstream 1179820 10595202 ~ 10678375 (+) False gli3
XR_004576967.1 other downstream 1458827 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other downstream 1458827 10874209 ~ 10984209 (+) False acad11

Expression Profile