RNA id: XM_034298271.1


Basic Information

Item Value
RNA id XM_034298271.1
length 7159
RNA type mRNA
GC content 0.37
exon number 6
gene id zbtb47b
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17116098 ~ 17139685 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGAATTGCAtccctgacctttgacccctaaGGACAACATCCATCAACTTTTCAGGCAGTGATACTTCCCGTTAAATTAGCTTATATCGTAGAAGACAGTCGTGTTCTGCCTGCTGGAGGATGTGCTGCTACATTTCACCCGTTTGATGGACACGCCTCACAAAGAGCAGCACCTTTTACAGCCCGACGTGTTTGATGTGGACTTTGCTGGGCACCAACGAGGTGGGCAATCAAGAAAAGCGCAGATACGCCACTTTACAGCAAAACCACAGAGGAAGAGTGCAAAATGGATGCCTTTTCCATTCAGGTGGTAGACAACACAATGGGCAGGCTAGAACATCATGCTAGCTCTCAGGCCCAGGCGAAGCACTTCTACAAAAAGGatgatggtggaggaagtgGGAGGGGTTTATGCAAAGCAGAGGGAGGCACCAGCCCTGAAGAGGTGGCACCTCAAGAAAGCCCTGCCTCTTATAACAGAGAGCAAATCATTGTTGAAGTGAACCTTAACAACCAGACCCTGAATGTTTCCAAGGGGTCAGAGGGCAAGACCAGAGAGCGGGGTCAGACTCGTCAACGCACGACGAGCAATGAAGATAATGACTATGAGCAGAGGCAGGAAGAGATGGAAATTAGCACAGAGGAGGAAaaggatgaagaagaagaagacgaagaggatgacgatgatgatgacgatgatgaagaGGAGAACGATCTTAGCATTCCAGAGGTTCCACAGGCTATTATGGAGAGACCGCGGCGTGGTACGAGAGCGAGTGCCGTTTCTTTGTGCCAGGGCCTGGGCAGTGGCACGCTGGCACAGGGGAAGAAGGAGCAGGAGAGTCAGGGCCAGAAGGTAAAGCTGGAGGAGAAGCAGCACTTCGCCTGCAAGAAATGTCCCCGTGTATTTAACAACCGCTGGTACCTGGAGAAACACACCAACGTCACACACAATCGCATGCAGATCTGCAACAAGTGTGGCAAACGCTTCCTTCTGGACAGTGAGCTGCTGCTGCACCATCAGACCAGCTGTGAGAAGAGCATACAGTGTGTGACCTGTGGGAAGGCATTTAAGAAGTTATGGTCCCTTCATGAGCACAACAAGGTTGTTCATGGCTATGCTGAGAAGAAGTTCTCCTGCGAGGTGTGTGAGAAGAAGTTCTACACGATGGCACATGTCAGGAAGCACATGGTGGCCCACACGAAGGACATGCCGTTTACTTGTGAGACGTGCGGGAAGTCGTTTAAGCGCAGCATGTCTCTGAAGGTGCACTCTCTGCAACACTCTGGGGAAAAACCCTTCAGGTGTGAGAACTGCAGTGAACGCTTCCAGTATAAGTACCAGCTTCGCTCTCACATGAGCATCCACATCGGCCACAAGCAGTTCATGTGCCAGTGGTGTGGTAAAGACTTCAACATGAAGCAATACTTCGACGAGCATATGAAGACCCACACTGgCGAGAAGCCGTATATCTGCGAGATCTGCGGGAAGAGCTTCACCAGCCGGCCCAACATGAAGCGGCACCGGCGCACCCACACAGGCGAGAAGCCGTACCCGTGCGACGTGTGCGGCCAGCGCTTCCGCTTCTCCAACATGCTCAAGGCGCACAAGGAGAAGTGCTTCAGGCTCAGCAGCTCTTTAGGAGACAACAGCAGTGTGACCTCGGGGGGTGAAGGGTCACAcccttcttctcttcctctcctccactcCATTAGTggccttcctcctcctccttctcctcctcctcctcctcctcctctgttcTCCAACTCAAGTAGCGACTAACGGCTTTCAGTGGAAACCTGGAactctttttctgtgtgtggtGAACCAAAAGCAGTAGGTTATTCGACTCTGTGGGTGATGTCATGCACAGAGGAGTCTGAATGATGTAGCAGGctttttaaacagtgtgtgacactgtgtgaaCTCATTTTCAagagatattttatatataatcaaGATTGGCTCCTTAAAAATTTGTTCTTAAATAATGCATTGTTGTGGTTAAGTTCTCATGTGCAGCTGATTGTGCaaataacattgtttttatttagaatgTCTTTACAGACTGTATGTCCTGTCtgttctgtcagtgtgtgtgtagatgctggAAACAGGCTCTGTTCTCTGCTCTCAGAGGAATCACCAGTGTTGTATGTTGTGTATCCATTCAGCAGAGGGAGCCCTGTGACTGAGCAGCAATGCAAAAGAGCTTTTTCACAAGAAGGTGCGATGCCGATAACCAAATCCCTGCGTCCCTGCAGTAACCAAACCCTGTGTGCTTATTAATGAGGTATGATGTGTTTATAATCACTCCTGCACCTTATTTCTAACTTGAACCATACATACGCTGATGTTGCATTGGTTAATGTTGTCTGATATGATGCCCTGTCTCTGGCACTTGAGAAATGAGGTGAGAAAGGGGGCGGGGTTATACAGAAGGTTATACAAGAAAACTGCAGATGTGAGATATATaaacagttttctttctttttttaatgtagaattgcactttattaaaaacagtctgcatatCGACCATAAACAGGACTGAAATATCAGTATCAGAAGCCTCTGATTCTGTAGATATATAGCATTATAGCAATATATTCAACTAAAGATGTTTgcaattttgtacatttgtctGTACCTGTAATAATTTAGGGTACATtcatgttttgaaaatgtagcTTTTTATGAATTTACTCATTCTAACATTACACTTagttttcacttcattttcaaAATCATTATTGATGTTATATTTTGAATTAGAAATTGAATTTGGATTTTGCTGAAAAGTTTGCCCATGTACGCTCTAAAAGTTTCATATAAGCAGCTGTTACTTAAATCTAAACTGTTCATCTTTACTGAGATAATAAGTTTTGGTGACTGAGATATCGTCTTTCATTTATGTccattataatataatagaacTAATTATAAAGCCTAATCTAAATAGAGGTAGAATGTTACGTTAGGGAGTAAAGGCTTGTGGATATCTAGTACTCGTATCTGTTTCTGAGATACACAAATATCTCAGAATGTCtcaaaatctgaaataatattTGTGTCACCAGAACAACATTTCAAATTCTGTGAATCAAATTTAGATTCATTTCCTGACTGCTAAATGGCTAAAATTCTACTGACTGAATGTTGTACAAATTTAAAGCTTTGAATTCAATTGAATTTCAAGATGGATTTAGTTTTCAAGCCTTCTATTCAACTGATGCACATTTAGATTTGGTCcatttaactttaaatttaaaaattaaactaaataactaaaactaaaatttaatataaatactaGTGACACAAATATCGAAgcaaagccaaaagaaaaaggTTACACTATTTCAACtatatgaacacatttaataGTTTACTAAGTCATAATCCACCTGCAACTTTTCTATGAATATAAGCAGTtagaaaatgaagtaaaataaatagaaatatataaaatctaaaactttAACATGCATTAATTAGTGGTCCTTTGAAGTCTTTAGGGAGAAATTGTGTAAGATCAGATTAAAGAAATGAGATTTTACAGCTTCTAGAGATTATATGAGTCTCACTTACCGAGTGATTAGACAGgttattacatataaaatattgaaCTCAGTATAATATAGTTTCAATAACAGCAAATACAAACACTATCTAACCTCTGTTAACATACACTCTGTGTGTAAGCTGTAAATAAGTAGTGTACTTAATGTCATTTACTGTGTaagcaggtttttttgtttacatcgTGTTGGGAGTCAGTTGAttgtgatgatgtgtgatgaAGGAGACAATACTTTGGAAAGACCTTGACCTTGAAAGTTACAAGCTGGAAGTAGATACACTTTTTCTATATGCAAAAAGTTCCAAAATGATTTtcgttaaaaaacaaaaaaggaaaaataattttaagcaCCTTATATTTTATAGTTGCTCATAATGATGTGCAAATGGTAAGATGgataaatagattttttccttttgttttattactttgttGAATTAATTAGATTTTTCTACACAACATTGTAGAAAACCCAAACCTATTCTTCAGTATTAACACTGAACAGAGTAACATCTGGTTTCGAATTGACCGAGCCCAGTAAATGAAAACTACCCAGTTTTTAATCactatttgaatattttttgttcCTTGTCATCttcataaatttacatttatacatttaggagatgcttttatccaaaataaGACAGAGTGTAATATGAGACCCAGCAGTGCGTTAAACTCTGGATATTAGGTCCAAGTCTGTAAAACTTAAATATAGGAGCAGAGGGTGCAGAATTGTGCAAGAGGAGTGAACAATGAGGAGTGAACAATGAATGTGTTGTTGTTAAAGAGAATCACAAGGCAGGAGTGAAGCTACTGATCAGTGCACTTTGGTTAGGGCACATTGCAcgataagataaaaaaaaagataataaaatgtataattttgcaAGTAATGTCATGTGCCAGATGGActttgaacaatttttttttttttttttgcatcctcTTGTCTTATGTCTTTGAACGCTTTATAtactattacacactcctaGTTGCACCTTATTCTCTTCATTGGGACACCCCCGTATGAGTAGGAGTGCAGTGCTGTATTTCTGTGACACCCAGAGATGAGCTTGTATTGGTACTTTATAGCTTTGCCAGTATGGAGAGTGATAAGTTGTAAAAGCATGGAGCGTCAGTAGAATTTCTCAACTCTAAAATGAAATGCGCCATGATGAGATTAAGGCATGTGCCGATAATCTGCTATCTTCAACATGCATGATATTGTTATCAAGGACACGTCAGAATATCATCCCCTCCCCTACATTCCATTCTGGAGGAGGCTGCAGAAGGGGCTGCCATTTTTGGGCCAGTGTTTCTGAGATAAAGCCTGTCTCATTCACAAGGCAGGGTAAAGTTACCATAAAGACAGCTTTCTTTTACAGTTCTTTGTTTtggaatgtgaaaaatgtgaaggTGAAGAAGCATCAGATTCTTCTCAGAGAGGgaaatcccataattctgttcaccagaTGAGAACACTCAATAATGAGGAAggatttttagaaataaagtaattaaagGGTTTTGCTTGGAAGCAGAGATGCTTGAAGTCATAAAAATGTTTGATATTTACTTGTGTTTAATTCAGAATATTTTTTCTCATTACAAGTGGACTAAATATAACATTCAgtagaaaataaaagcaattaaTAGTACTAAATAAAAGTACTAAGACTATAGATTATTTATAGTACTAGGACACTAAGTATAGTATATCATTGTTCCCGCAAAGAAATTgactattttttgtttgtttgtttgtttgtttgtttgtttgtttgtttgttttaaatctgatccTATCACTGGAAAGAAAGCATACTGGCAAATGATTACCTtgctaatattatattattattcatggCTACCAGTTCAACTTTAATGTGCAGATAATGAAAATTAGCCAAATATAGTCTCAAATATGATAAAGATTACAAATAGCCCCCAGTCTCTTTATAACAATTGAATGTTGAATAATTGCAAATTACAAACTTTCTGCAAGCATAACAATATCATCATTTGTTAATTAGctcaaaagttgtttttttttttgccagtcaGTCATTTGATGTATATTGAGCTTAAattatgatattaaatattgagTTATACTGCAATAATCAATTCTAGAGcctgaaaatgtttgaaattgaCTGTACCAACCCTGTActgttttaagaaataaaaatattgggGTAATATTGGGGCAACTCGTGATTAATGGTGAACTGACGTTTTAATATCGGCACATGCCTGCTTCTCTAGATTCAGGATTTAGTATCCCAGAACTTTATTATCATATGTAGAAGCTTCTTATACAGTGAAATACTTAGTAGAAATAATAACAAGTTAAAATAAAGACCAGTCTTAAAATTGTGCACTATATTGTCTAGCCGCAATATATTACACAGTTTGTAACACtgggctttattttattttgaatggaGAGAAATGCACAAATTTGCTTTAGTACAATTGTTCCACAGGAAATACAGTTTTCTAACAACACTAATCTGTTCAAGGCCCACTTAGGGAGCACTGATGAGAGCGTAATAATTGCATCCTTCCAAAACTGGTCTTTTAAACATGTTCctacaaaatgattaaaattgaaAAGGTGGCTTTTCACAAAGCTTTTTTTGTGTGCACTTTATgggatgtgtgtttttatttttttattttttaatttttgaaaaaagaGATTGTCTCATCAAAAgtctttaaatttaaacatttaaaaaatttatttctgttgattcttattttaaaaagttgggAAATCATACTGTTATATATTATCCTAATTTCTTAAGGATggctttcacttttttcactgttttgattATCAGATATAAGTATTTGCTACAAGTTTGTGAAGAATGAAATGgttctgtttttccattttttcttctgtaaagtAAGTTTGGATTTGCTGCTAGTTATGCTTAAGTTAGGAATTTGTGGCCTTTAAAtggatattttttaatacatgctATGGTTTCATGAAATTgcataaataatcatttactgtatatgccAATAGAGAGCATTTACACTGAATGAGTttaattgggggaaaaaagttaatCTTGTTCCGTATTGGTCTTCAGTGTCTGTTGtgttaaagagagaaacaggagTATAAAATGATTTGCACTTTGAAAGTGGTTTAATCATCAGTGTATGATTTGAGCAGAACTCACTCACCATGTAACTCATTATAGCCAAATCAAAGATGtagtcagtttttttaaaacaataccTAATATCTTATAATGTACTTACTATTCCTTAATATGTATTAAACCATTCTCGAGTGACTGTTCCCGCATCATTTCCTACTTTTATCATGTAAACTCAATATCTTAgcaaagctgtgtgtgtaaacGTCTCATGTATGCAGTAGCCATGTTGGTTTTGTAAACTCGGTACTAAAAACGATACAAAGACGCTAGTGTCTAGAGGTGCTAATACATTATACtgcattttgtgtcatttatctTGTCTGTAACAGAGCAAAAATAAGATTCATTTTAATAGCAAACTAAATTAAACAATATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394919 lncRNA downstream 29894 17085883 ~ 17086204 (-) True G333470
TU394903 lncRNA downstream 78586 17037167 ~ 17037512 (-) True G333454
TU394901 lncRNA downstream 85401 17030465 ~ 17030697 (-) True G333452
TU394860 lncRNA downstream 107365 17007827 ~ 17008733 (-) True G333417
TU394880 lncRNA downstream 160635 16953725 ~ 16955463 (-) True G333434
TU394977 lncRNA upstream 146811 17285753 ~ 17299701 (-) True G333525
TU394987 lncRNA upstream 146811 17285753 ~ 17291010 (-) False G333525
TU394988 lncRNA upstream 148314 17287256 ~ 17295034 (-) False G333525
TU394991 lncRNA upstream 148314 17287256 ~ 17301996 (-) False G333525
TU394986 lncRNA upstream 151195 17290137 ~ 17301996 (-) False G333525
XM_026938154.2 mRNA downstream 42456 17030860 ~ 17073642 (-) False ctdspla
XM_026938152.2 mRNA downstream 42456 17030860 ~ 17073642 (-) True ctdspla
XM_026938293.2 mRNA downstream 87205 17015624 ~ 17028893 (-) True vill
XM_026938294.2 mRNA downstream 87240 17015624 ~ 17028858 (-) False vill
XM_026938113.2 mRNA downstream 135023 16960853 ~ 16981075 (-) False dlec1
XM_026938200.2 mRNA upstream 3519 17142461 ~ 17161207 (-) True nktr
XM_034298305.1 mRNA upstream 52377 17191319 ~ 17239116 (-) False vipr1b
XM_026938244.2 mRNA upstream 52377 17191319 ~ 17239106 (-) True vipr1b
XM_026938256.2 mRNA upstream 127314 17266256 ~ 17276128 (-) True si:ch211-161h7.4
XM_026938267.2 mRNA upstream 138462 17277404 ~ 17281623 (-) True si:ch211-161h7.5
XR_004576965.1 other downstream 236214 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other downstream 236215 16830696 ~ 16879883 (-) False oxsr1b
TU393587 other downstream 2050288 14965813 ~ 15065810 (-) False LOC113541115
XR_003404167.2 other downstream 2178694 14936886 ~ 14937404 (-) False LOC113541102
TU392350 other downstream 4438165 12676581 ~ 12677933 (-) False LOC113541288
XR_004576994.1 other upstream 46582 17185524 ~ 17239106 (-) False vipr1b
TU395488 other upstream 768952 17907894 ~ 17908812 (-) False LOC113541127
XR_004576970.1 other upstream 770996 17909938 ~ 17916556 (-) False c22h11orf65
TU395529 other upstream 786133 17925075 ~ 17926835 (-) False zmp:0000000991
trnay-gua_3 other upstream 1240094 18379036 ~ 18379121 (-) True trnay-gua_3

Expression Profile