RNA id: XM_034297816.1


Basic Information

Item Value
RNA id XM_034297816.1
length 2474
RNA type mRNA
GC content 0.43
exon number 13
gene id prkag2a
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 12062332 ~ 12156787 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cctggaggtgcgaggcagatgtgctaaccactaagccaccatgccctcCTTAGAAAACATTTATTGAGTAATTTATTGAAGTAATAATGAAGCTGGAAGAGAACTGGAAGCTGTGTTTTGGAAGCTCATAGCTGTTCAGACTAAGCTGGAGTTTTCAGAAGGgtTCGCGGTTTGTCTGAAGGCATGCTGGAGAAACTCGATCTCGAAGATGAAGTTGTCGAAGAGTCTGAAAGTGATATTTACATGCGCTTTATGAAGTCCCACAAGTGCTATGACATTGTCCCCACTAGTTCCAAGCTAGTGGTGTTTGACACAACACTACAAGTTAAGAAGGCCTTTTTCGCACTGGTGGCTAATGGAGTTCGAGCTGCGCCACTGTGGGAGACGAAGAAGCAGAGTTTTGTAGgaaTGCTAACAATCACAGACTTCATCAATATACTTCACAGATACTACAAGTCACCCATGGTGCAAATCTATGAGCTGGAGGAACATAAGATTGAGACTTGGAGAGAGCTCTATTTACAAGAAACCTTTAAACCTTTAGTCAACATATCACCAGATGCAAgCATATTCGACGCTGTGTATTCGCTAATCAAGAACAAGATTCACCGCTTGCCCGTTATTGACCCCGTCAGTGGGAATGCACTTTATATCCTCACGCACAAGAGGATCCTCAAGTTCCTACAGCTTTTCGTGTGTGAGATGCCAAAGCCTGCCTTCATGAAGAAGACCCTGGAAGAGCTGGGCATCGGGACGTACAGCAACATCGCCTTCATTCACCCTGACACGCCAATAATCAAAGCTCTGAGCATCTTCGTGGACAGGAGGGTTTCAGCTCTGCCTGTGGTAGACGAGTCCGGAAAGGTTGTAGATATTTATTCCAAGTTTGATGTCattAATCTTGCTGCTGAAAAGACCTACAATAACCTGGACATTAGCGTGACTCAGGCGTTGATGCATCGCTCCCAGTATTTTGAGGGTGTCATGAAGTGCAACAGACTGGAGACTCTGGAGACTATAGTGGACAGGATAGTCAAAGCTGAGGTGCACAGGCTGGTGGTGGTAGACGAGGCTGGCTGCATCGTGGGTATTGTGTCCCTGTCGGACATCCTGCAGGCCCTGGTCCTCACTCCAGCAGGTCTGACCAGGAAGGAGAGTGAGGAAGCTGAGTGATGCACATCAGAACTGCTAAATTCTGTCATGCTGCTGGAAGAGGAAGCGGGAAGTAGATTTGAAGCTGGAGTTTGGGATGAATTTGCAGCCCACTGAGGGCTGGCAGAAGGAGGAAAAGGGTACATGGGTGCAAACTGAATGCTGCTGAAGGCCAGACGAGGAAATGGATTGATGGggggaatggatggatgggctACAGGGGCGACAAGGTGGACCACCAAGGATCTCTTCCTCACAGGGATTCTGCAGAGCTCAGTGTCTAAAGCTGTTACTGCACGCTCACTATCACTACATATGAAACATCACCATCTGGTGTCCATTCTGTGTACTAAACTCACTGGTATACTTAGGACTGTACCATCAATATCATCTGAGGGGATTCCTTCTAGTGACAAACAACTTAGAACTGGCTTTATtcagagcaattttttttttctcatttccatGTTCTTTGTTTATAGCACAGCTTTGGCTTGTGGGTTTACTTGCACATTTGAAACTGTCCTTTAGTTCTGTACCAATTTTATCCTCCCTTTATTAATATTCATCTCCCCTCTTTCTTTAAATGGTGCCTTCTGTCCACCAGTTGTCGCCCATTACGGATGGCCAAGAGAAAGCCAGAACAGCGAAtgttcaaatgaaacaaaatgaatgtCAGTGTATCTGAAAACCAAAATGTTTGGAATATgttgtcagtgattttaatagttttaagtttatatatatatatttttccttccTTTGAAAAGTTTTATTTCAATAATATGTTTTTGGAATGATACTGTAAACATAGATTCagcgttttatttatttgtactttaatatttgttataattttttttaaatgtcaaatggGATGGAAAGATACGTTCAGGCCCTATGCATTAAAATGACGTTCTTATGACTTGACATTTAGTGCAATTTCAAAACGCAGCCGCTGCCTACAAGCAGTTATTTCTTCTCTCCAGGTAAACCGGAGGCATGCAACGAAACCCCTCATACTCCGTATCAGTTGTACTGTACATAGGAAGAGCTTGTGAGATATCTACAAAGTGCCAGAGAAAGGTCTATTTTTCTGTGCATTCAATGTATGTTTGTAATATTACAGATTTTCATTTGCAGGTCCTGTCATCTTTATTGTGGCTGTGTTGATGGTAAAGGTCACTGATGAAAACATCATGTCCACTGAAAATTGTACATCACTGGCATGAAGATGATACTACAATGGTTAAACATTGTgggttgattttatttttccattttgcgGTTTGGAAAACAATAAATCATGCTACTGGATCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392006 lncRNA upstream 89399 12024576 ~ 12034059 (+) True G330962
TU391950 lncRNA upstream 177220 11944030 ~ 11946238 (+) True G330911
TU391946 lncRNA upstream 227567 11895666 ~ 11895891 (+) True G330908
TU391895 lncRNA upstream 249266 11873992 ~ 11874192 (+) True G330869
TU391882 lncRNA upstream 297068 11826139 ~ 11826390 (+) True G330856
TU392061 lncRNA downstream 54466 12211250 ~ 12273290 (+) True G331003
TU392238 lncRNA downstream 291978 12448762 ~ 12450347 (+) True G331161
TU392342 lncRNA downstream 553735 12710519 ~ 12712678 (+) False G331263
TU392357 lncRNA downstream 576025 12732809 ~ 12733703 (+) True G331277
TU392360 lncRNA downstream 584333 12741117 ~ 12741678 (+) True G331280
XM_026937978.2 mRNA upstream 179950 11900755 ~ 11943508 (+) True vps41
XM_026938296.2 mRNA upstream 379747 11717415 ~ 11743711 (+) False ankha
XM_026938297.2 mRNA upstream 379747 11717498 ~ 11743711 (+) False ankha
XM_026937973.2 mRNA upstream 570241 11488916 ~ 11553217 (+) True fam49bb
XM_026937960.2 mRNA upstream 637153 11391309 ~ 11486305 (+) True asap1b
XM_026938259.2 mRNA downstream 5671 12162455 ~ 12179621 (+) True LOC113541340
XM_026938147.2 mRNA downstream 25001 12181785 ~ 12234183 (+) True bcl2a
XM_026938086.2 mRNA downstream 271673 12428457 ~ 12499046 (+) True hs6st1b
XM_026938277.2 mRNA downstream 550155 12706939 ~ 12708003 (+) True LOC113541349
XM_034298168.1 mRNA downstream 553842 12710626 ~ 12712651 (+) True ccl34b.4
TU391847 other upstream 374899 11738158 ~ 11748559 (+) True ankha
XR_003404155.2 other upstream 1139249 10874209 ~ 10984209 (+) False acad11
TU392341 other downstream 550155 12706939 ~ 12712678 (+) True G331263
TU392569 other downstream 1101110 13257894 ~ 13258416 (+) True G331476
trnat-agu_17 other downstream 1228417 13385201 ~ 13385274 (+) True trnat-agu_17
XR_004576981.1 other downstream 3094851 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 3409391 15566175 ~ 15566663 (+) True G332636

Expression Profile