RNA id: XR_003404147.2


Basic Information

Item Value
RNA id XR_003404147.2
length 3411
RNA type misc_RNA
GC content 0.45
exon number 16
gene id prkag2a
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 12062332 ~ 12156787 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGGGCTTGTAGAGCTGCAGATCCAGCTGAAACCACTGAAGTGCGCTACCTTTGACATTTGCTTCCtataatgaacaaaatgtagCGTTTTCCAAGCAAATCCGCTGCAGTTGGTCGTGATGTCTATCTTGGAGTTGCTTCTTAGGATTATTACAGGACTGATAAGATGAGGTGTTTTTTATTATCATGGATTAAAATCAGTTATTGGCTGGTGCTCGTGCGTTAAAATTCAGATGATTAGGCACACATAATCATCATTAGGAATTTGTCTTTGGCTTTAGTTGATCAGTTGAATAGGTGGATTGGTGGgggaaattattatttattttaagagtagCTTATCTGCAAGGAAAATGGGAAGCACTGTGATGGATTCAAAGAAGACGGATGGAAGGAAGAAATGGACAAGAAGAAGGACAACGCTTCGGTTAAACATGCCGGACCTGAGCTTATTTGCCATGCCCTTCCTGGAGGGAGATGATGAGCACAATGACAAGGATGACACGCATAAGGGAGAGACCAGCTGCCACTCAGCTAGCCCAACTAAAGGGTTTTTCAGCAGGAGTCCATTTAGTCGGCCCTCTAGCCCCATGTCGGCTCCAGCAAGGTCCAAAACCAGCCCGGGGTCACCAAGAACCATCTTCCCCTACCCCCTACATCAGGATTCGCCACCTAAATCACCGCGCCGCCTCAGCTTTTCTGGAATCTTTCGCTCATCCTCCAAGGACTCCTCTTGTGCCTCCCTGTCCACTTCCTCTTCTGCCTCTCCAGTCAGTATTAAACTCTTCTCCCGTGCCAGGAAAGTGTCTGGGATCTCCTCACCACCCACCACTCCTACACAACTGACCAAACCTTCACCACCAtttcctgtggaggaaaaccGCAACCTCCCTATGCGTCAAGAGGAACGGTTGCGCTCTCTGTCCTCTCCCCCAGACACAGGCCAGCACTTCAGTTTGCCCTCAGCCAAGCCACCTCTCACCACTTCCTCAGCACCTATCGCTACCTCACACATGgtTCGCGGTTTGTCTGAAGGCATGCTGGAGAAACTCGATCTCGAAGATGAAGTTGTCGAAGAGTCTGAAAGTGATATTTACATGCGCTTTATGAAGTCCCACAAGTGCTATGACATTGTCCCCACTAGTTCCAAGCTAGTGGTGTTTGACACAACACTACAAGTTAAGAAGGCCTTTTTCGCACTGGTGGCTAATGGAGTTCGAGCTGCGCCACTGTGGGAGACGAAGAAGCAGAGTTTTGTAGgaaTGCTAACAATCACAGACTTCATCAATATACTTCACAGATACTACAAGTCACCCATGGTGCAAATCTATGAGCTGGAGGAACATAAGATTGAGACTTGGAGAGAGCTCTATTTACAAGAAACCTTTAAACCTTTAGTCAACATATCACCAGATGCAAgCATATTCGACGCTGTGTATTCGCTAATCAAGAACAAGATTCACCGCTTGCCCGTTATTGACCCCGTCAGTGGGAATGCACTTTATATCCTCACGCACAAGAGGATCCTCAAGTTCCTACAGCTTTTCGTGTGTGAGATGCCAAAGCCTGCCTTCATGAAGAAGACCCTGGAAGAGCTGGGCATCGGGACGTACAGCAACATCGCCTTCATTCACCCTGACACGCCAATAATCAAAGCTCTGAGCATCTTCGTGGACAGGAGGGTTTCAGCTCTGCCTGTGGTAGACGAGTCCGGAAAGGTTGTAGATATTTATTCCAAGTTTGATGTCattAATCTTGCTGCTGAAAAGACCTACAATAACCTGGACATTAGCGTGACTCAGGCGTTGATGCATCGCTCCCAGTATTTTGAGGGTGTCATGAAGTGCAACAGACTGGAGACTCTGGAGACTATAGTGGACAGGATAGTCAAAGCTGAGGTGCACAGGCTGGTGGTGGTAGACGAGGCTGGCTGCATCGTGGGTATTGTGTCCCTGTCGGACATCCTGCAGGCCCTGGTCCTCACTCCAGCAGGTATAGACGCTCTGCACTGCTAAAGCTCCTCTCTGTTCCCGGACTCCTCTCTCTtcccaccccaacacacacgcacacagGTCTGACCAGGAAGGAGAGTGAGGAAGCTGAGTGATGCACATCAGAACTGCTAAATTCTGTCATGCTGCTGGAAGAGGAAGCGGGAAGTAGATTTGAAGCTGGAGTTTGGGATGAATTTGCAGCCCACTGAGGGCTGGCAGAAGGAGGAAAAGGGTACATGGGTGCAAACTGAATGCTGCTGAAGGCCAGACGAGGAAATGGATTGATGGggggaatggatggatgggctACAGGGGCGACAAGGTGGACCACCAAGGATCTCTTCCTCACAGGGATTCTGCAGAGCTCAGTGTCTAAAGCTGTTACTGCACGCTCACTATCACTACATATGAAACATCACCATCTGGTGTCCATTCTGTGTACTAAACTCACTGGTATACTTAGGACTGTACCATCAATATCATCTGAGGGGATTCCTTCTAGTGACAAACAACTTAGAACTGGCTTTATtcagagcaattttttttttctcatttccatGTTCTTTGTTTATAGCACAGCTTTGGCTTGTGGGTTTACTTGCACATTTGAAACTGTCCTTTAGTTCTGTACCAATTTTATCCTCCCTTTATTAATATTCATCTCCCCTCTTTCTTTAAATGGTGCCTTCTGTCCACCAGTTGTCGCCCATTACGGATGGCCAAGAGAAAGCCAGAACAGCGAAtgttcaaatgaaacaaaatgaatgtCAGTGTATCTGAAAACCAAAATGTTTGGAATATgttgtcagtgattttaatagttttaagtttatatatatatatttttccttccTTTGAAAAGTTTTATTTCAATAATATGTTTTTGGAATGATACTGTAAACATAGATTCagcgttttatttatttgtactttaatatttgttataattttttttaaatgtcaaatggGATGGAAAGATACGTTCAGGCCCTATGCATTAAAATGACGTTCTTATGACTTGACATTTAGTGCAATTTCAAAACGCAGCCGCTGCCTACAAGCAGTTATTTCTTCTCTCCAGGTAAACCGGAGGCATGCAACGAAACCCCTCATACTCCGTATCAGTTGTACTGTACATAGGAAGAGCTTGTGAGATATCTACAAAGTGCCAGAGAAAGGTCTATTTTTCTGTGCATTCAATGTATGTTTGTAATATTACAGATTTTCATTTGCAGGTCCTGTCATCTTTATTGTGGCTGTGTTGATGGTAAAGGTCACTGATGAAAACATCATGTCCACTGAAAATTGTACATCACTGGCATGAAGATGATACTACAATGGTTAAACATTGTgggttgattttatttttccattttgcgGTTTGGAAAACAATAAATCATGCTACTGGATCTTTGAA

Function

GO: NA

KEGG:

id description
K07200 PRKAG; 5'-AMP-activated protein kinase, regulatory gamma subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392006 lncRNA upstream 28273 12024576 ~ 12034059 (+) True G330962
TU391950 lncRNA upstream 116094 11944030 ~ 11946238 (+) True G330911
TU391946 lncRNA upstream 166441 11895666 ~ 11895891 (+) True G330908
TU391895 lncRNA upstream 188140 11873992 ~ 11874192 (+) True G330869
TU391882 lncRNA upstream 235942 11826139 ~ 11826390 (+) True G330856
TU392061 lncRNA downstream 54463 12211250 ~ 12273290 (+) True G331003
TU392238 lncRNA downstream 291975 12448762 ~ 12450347 (+) True G331161
TU392342 lncRNA downstream 553732 12710519 ~ 12712678 (+) False G331263
TU392357 lncRNA downstream 576022 12732809 ~ 12733703 (+) True G331277
TU392360 lncRNA downstream 584330 12741117 ~ 12741678 (+) True G331280
XM_026937978.2 mRNA upstream 118824 11900755 ~ 11943508 (+) True vps41
XM_026938296.2 mRNA upstream 318621 11717415 ~ 11743711 (+) False ankha
XM_026938297.2 mRNA upstream 318621 11717498 ~ 11743711 (+) False ankha
XM_026937973.2 mRNA upstream 509115 11488916 ~ 11553217 (+) True fam49bb
XM_026937960.2 mRNA upstream 576027 11391309 ~ 11486305 (+) True asap1b
XM_026938259.2 mRNA downstream 5668 12162455 ~ 12179621 (+) True LOC113541340
XM_026938147.2 mRNA downstream 24998 12181785 ~ 12234183 (+) True bcl2a
XM_026938086.2 mRNA downstream 271670 12428457 ~ 12499046 (+) True hs6st1b
XM_026938277.2 mRNA downstream 550152 12706939 ~ 12708003 (+) True LOC113541349
XM_034298168.1 mRNA downstream 553839 12710626 ~ 12712651 (+) True ccl34b.4
TU391847 other upstream 313773 11738158 ~ 11748559 (+) True ankha
XR_004576967.1 other upstream 1078123 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other upstream 1078123 10874209 ~ 10984209 (+) False acad11
XR_004576968.1 other upstream 1079117 10874209 ~ 10983215 (+) False acad11
XR_004576969.1 other upstream 1079117 10874209 ~ 10983215 (+) False acad11
TU392341 other downstream 550152 12706939 ~ 12712678 (+) True G331263
TU392569 other downstream 1101107 13257894 ~ 13258416 (+) True G331476
trnat-agu_17 other downstream 1228414 13385201 ~ 13385274 (+) True trnat-agu_17
XR_004576981.1 other downstream 3094848 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 3409388 15566175 ~ 15566663 (+) True G332636

Expression Profile