RNA id: XM_026937807.2



Basic Information


Item Value
RNA id XM_026937807.2
length 1183
RNA type mRNA
GC content 0.48
exon number 9
gene id tpk1
representative False

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15587302 ~ 15614891 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


aaatAAGCAGGGTTAGATACACGTAAGTGCCCGGATGTGACGGCGGTCTCCTATTAGTTCCGACCAAACCCGGATATGTAGTTCCCCAAAATATACTACAAATAAACGGgcgGTGAACTGCAGCTGAAATCAGGGACATGGATGAAGAGTTCACTCCTTTAGACTGCCTTCTGtccacagGAACCCAGAAGATTTGCCTGGTTATCCTGAATCAGCCGCTGGAGTCTCGCTTCTTCCATGTGCTCTGGAATAAAGCTGTGATCCGAGCATGTGCAGACGGCGGGGCCAACCATCTTTACCGACTGACAGAGGGCCAAAGGGAAAGttttCTCCCAGATTATATAAGCGGCGATTTTGATTCAATTACGCCTGAGGTCAAAAATTTCTACTCAGAAAAGAAGTGCAGGCTGATTGAAACCGCTGATCAGGACCTGACAGACTTCACTAAGTGCTTGGTCCTCATGCTGGAGGAGATCAAGAAGAGACAAGTGCAGGTGGACACCATTGTCACGCTAGGAGGCTTAGGAGGGCGATTTGATCAGATCATGGCTACAGTGGAGACACTTTTTCACATACAGAAGATGTCAGAGATCCCAGTGGTGGTCATCCAGGATTCCTCTCTGGCCTGTCTGCTCCGAGAGggCAGGAAGCACCAGCTGTATGTGAACACAGGTTTGGAGGGTGAGTGGTGCGGTTTGATCCCAGTGGGTGGCTCCTGCGTCACCAGCACCTCGGGGCTCAAATGGAACTTGGATAACCATGTGCTGGAGTTTGGGAAGCTCATCAGCACATCCAACACGTATGAAGAGCTTGATgccaaagagaagagaaaacctGTGACCATCAGCACAGACAGACCTCTTCTATGGACTATGGGTATTAAaacagagtaaataaataattaggaAGTGGACatataccaatcagccataacattaaaaccactgacaggtgaataacattcattatctcgttacaaaagttgatgtgttggaagcaggaaaaatgggcaagtgtaggGATcgtgctgcgtatggggctgcgtgatagcagactggtcagagtccccatgctgacccctgtccactgccgaaatcGCCTACAATTGGTACGTGAGCATCAgtactggaccatggagcaatggaagaaggtggcctggtccgatgaatcacctttttttata

Function


GO:

id name namespace
GO:0006772 thiamine metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009229 thiamine diphosphate biosynthetic process biological_process
GO:0004788 thiamine diphosphokinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_004576951.1 lncRNA upstream 7873 15570863 ~ 15579798 (+) True LOC113541248
XR_003404160.2 lncRNA upstream 15854 15570863 ~ 15571817 (+) False LOC113541248
XR_003404151.2 lncRNA upstream 168748 15413872 ~ 15418923 (+) True LOC113541145
TU393773 lncRNA upstream 255239 15328614 ~ 15332432 (+) True G332527
TU393552 lncRNA upstream 272703 15223520 ~ 15314968 (+) False stau2
TU394071 lncRNA downstream 426493 16041384 ~ 16041587 (+) True G332788
TU394073 lncRNA downstream 486859 16101750 ~ 16102212 (+) True G332790
TU394074 lncRNA downstream 487380 16102271 ~ 16102597 (+) True G332791
TU394160 lncRNA downstream 604662 16219553 ~ 16220945 (+) True G332859
TU394510 lncRNA downstream 980890 16595781 ~ 16620089 (+) True G333157
XM_026937952.2 mRNA upstream 190144 15382986 ~ 15397527 (+) True si:ch73-173p19.1
XM_034298261.1 mRNA upstream 321776 15251636 ~ 15265895 (+) True si:ch73-173p19.2
XM_034298109.1 mRNA upstream 363080 15134353 ~ 15224591 (+) False stau2
XM_026937826.2 mRNA downstream 5257 15620148 ~ 15629965 (+) True panx1a
XM_026938236.2 mRNA downstream 462000 16076891 ~ 16096771 (+) True hephl1a
XM_026938234.2 mRNA downstream 585605 16200496 ~ 16219013 (+) False LOC113541322
XM_026938235.2 mRNA downstream 587093 16201984 ~ 16219013 (+) False LOC113541322
XM_026938231.2 mRNA downstream 587094 16201985 ~ 16219013 (+) False LOC113541322
TU393912 other upstream 21008 15566175 ~ 15566663 (+) True G332636
XR_004576981.1 other upstream 323084 15251635 ~ 15264587 (+) False si:ch73-173p19.2
trnat-agu_17 other upstream 2202397 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 2329255 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 2874993 12706939 ~ 12712678 (+) True G331263
TU394735 other downstream 1492581 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 1492581 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 1670191 17285082 ~ 17300011 (+) True G333388
TU394792 other downstream 1672269 17287160 ~ 17302004 (+) False G333388
TU394797 other downstream 1672269 17287160 ~ 17295054 (+) False G333388

Expression Profile