Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034297849.1 |
| length | 1119 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 9 |
| gene id | tpk1 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 15587302 ~ 15614891 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006772 | thiamine metabolic process | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0009229 | thiamine diphosphate biosynthetic process | biological_process |
| GO:0004788 | thiamine diphosphokinase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004576951.1 | lncRNA | upstream | 7504 | 15570863 ~ 15579798 (+) | True | LOC113541248 |
| XR_003404160.2 | lncRNA | upstream | 15485 | 15570863 ~ 15571817 (+) | False | LOC113541248 |
| XR_003404151.2 | lncRNA | upstream | 168379 | 15413872 ~ 15418923 (+) | True | LOC113541145 |
| TU393773 | lncRNA | upstream | 254870 | 15328614 ~ 15332432 (+) | True | G332527 |
| TU393552 | lncRNA | upstream | 272334 | 15223520 ~ 15314968 (+) | False | stau2 |
| TU394071 | lncRNA | downstream | 426493 | 16041384 ~ 16041587 (+) | True | G332788 |
| TU394073 | lncRNA | downstream | 486859 | 16101750 ~ 16102212 (+) | True | G332790 |
| TU394074 | lncRNA | downstream | 487380 | 16102271 ~ 16102597 (+) | True | G332791 |
| TU394160 | lncRNA | downstream | 604662 | 16219553 ~ 16220945 (+) | True | G332859 |
| TU394510 | lncRNA | downstream | 980890 | 16595781 ~ 16620089 (+) | True | G333157 |
| XM_026937952.2 | mRNA | upstream | 189775 | 15382986 ~ 15397527 (+) | True | si:ch73-173p19.1 |
| XM_034298261.1 | mRNA | upstream | 321407 | 15251636 ~ 15265895 (+) | True | si:ch73-173p19.2 |
| XM_034298109.1 | mRNA | upstream | 362711 | 15134353 ~ 15224591 (+) | False | stau2 |
| XM_026938099.2 | mRNA | upstream | 362711 | 15135024 ~ 15224591 (+) | False | stau2 |
| XM_034298108.1 | mRNA | upstream | 362711 | 15137731 ~ 15224591 (+) | True | stau2 |
| XM_026937826.2 | mRNA | downstream | 5257 | 15620148 ~ 15629965 (+) | True | panx1a |
| XM_026938236.2 | mRNA | downstream | 462000 | 16076891 ~ 16096771 (+) | True | hephl1a |
| XM_026938234.2 | mRNA | downstream | 585605 | 16200496 ~ 16219013 (+) | False | LOC113541322 |
| XM_026938235.2 | mRNA | downstream | 587093 | 16201984 ~ 16219013 (+) | False | LOC113541322 |
| XM_026938231.2 | mRNA | downstream | 587094 | 16201985 ~ 16219013 (+) | False | LOC113541322 |
| TU393912 | other | upstream | 20639 | 15566175 ~ 15566663 (+) | True | G332636 |
| XR_004576981.1 | other | upstream | 322715 | 15251635 ~ 15264587 (+) | False | si:ch73-173p19.2 |
| trnat-agu_17 | other | upstream | 2202028 | 13385201 ~ 13385274 (+) | True | trnat-agu_17 |
| TU392569 | other | upstream | 2328886 | 13257894 ~ 13258416 (+) | True | G331476 |
| TU392341 | other | upstream | 2874624 | 12706939 ~ 12712678 (+) | True | G331263 |
| TU394735 | other | downstream | 1492581 | 17107472 ~ 17110027 (+) | False | hhatlb |
| TU394736 | other | downstream | 1492581 | 17107472 ~ 17110027 (+) | False | hhatlb |
| TU394798 | other | downstream | 1670191 | 17285082 ~ 17300011 (+) | True | G333388 |
| TU394792 | other | downstream | 1672269 | 17287160 ~ 17302004 (+) | False | G333388 |
| TU394797 | other | downstream | 1672269 | 17287160 ~ 17295054 (+) | False | G333388 |
