RNA id: XM_026937808.2


Basic Information

Item Value
RNA id XM_026937808.2
length 2143
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC113541039
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 16795010 ~ 16801971 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCAGCATGGCTTCCTGGGAATGACTGCACATGTGTTTCTGGTGAAATGAAACTCAGGCTATTAAAAAGCCAAAGTGCAAAGCCATCTTCTCAGTTGTGAAGCTTCACTTCTACGAGGAACTAAAGCTactgcagTCATGGCCTCCTCCAGCAGTCTGCTGTGTGAGGAGCAGCTCCAGTGCGCAATTTGTCTAGATGTGTTCACTGATCCAGTGTCTACTCCGTGTGGACACAACTTCTGCATGACCTGTCTCAAAGAATGCTGGGACAACAGTTCATACTGCCAGTGTCCAGTTTGTAAGCAGGATTTTGCTAAAAGGCCTGAGCTTCATGTGAATACGTTCATATCTGGACTAGCTGTTCAGTTCAGGAAGCTGGGTGAGGTGAAATCCAGCAACACGGCGGAGCAGCTCGGCTCTGCGGGTACAAAGGTGCTGTGTGATTGCTGCACAGGGGAAAAGCTCGAGGCTCTAAAGTCCTGTCTGGACTGTGGGGTTTCTTACTGTAACACTCATCTGATGCCTCATAGAACTGCAACTAAACTCAAGAAACACAAACTGATTGATGCTGTGGAGAAGCTGAAGGATTACATCTGCCAGAAACATGAGAGACCCCTGGAGCTGTTCTGTAGAGATGaccggatgtgtgtgtgtcagttctgCACCGAGGGAGATCACAAAACCCACCGCACTGTCCCAATAGAGGAGGAGAGTCAAGCAAAGAAGtCTCAGCCAGGGATGATGCAGTCAGAAGTTCAGCAGATCATCCAGGATCAAATGAGGAAGATTCAGGAAATCAAACACTCTGTAAAACTCCATAATAGAAACATAGAGAAGGAGAAAGTAGACAGTATGAAGGTGTTTGATGATCTGATTCGCTGtgttgagaggaaccaggctgaGCTGCTCAAGATGATGAAGGAAAAGCAGAGAGCAGCAGAGTGGCAGGCTGAAGAGCTCATTAAAGAGCTGGAGGAGGAAATCACTGAGCTAAAGAGGAGAAacactgagctggagcagctctcacacactgacGATCATCTCCACTTCCTGCAGATGTACTCATCCATCTGCAGCCCTAAACACACCAGAAACTGGACTGACATCAGGTTTATCCCTGAGATGAGTGAGGAAACTCTGATGAGAGCTCTGTCTGAGCTTCAGGAACATCTCAGTAAGGAAATGGAGAAACTTTCTGAAATTAAACTGAAGAAAATTCAGCAATAcgcagTGGAAGTGACTCTGGATCCCGATACGGTTCACCCTTACCTCATTTTGTCTGAAGATAGAAAACAAGTGACATGTGGAGACTGTGTGCAGAATTACCCTGATAACCCTCAGAGGTTCAATCGCTGTCCCTGTGTGCTGGGGAAGGAAGGATTCTCCTCAGGGAGATCTTACTATGAGGTACAGGTCAGAGGGAAGACCATGTGGGATTTAGGAGTCGCCCGAGAGTCCATTATCAGGAAGGGAAAGATTACAGCCTGCCCTGAGAATGGATACTGGTCTGTGTGTCTGAGGCATGAGACTGATTATAAGGCTTGTGAGACTCCCTGGATTTCACTCTCTTtgaaacagaagcctgaaaagATCGGGGTGTTTGTGGATTACGAGGAGGGCCTCATCTCCTTCTATGATGTAAAGACTAAGACTTGTATCTACTCTTTCGCTGGTCAGTCTTTCTCTGAGAAACTCTATCCATATTTTAGCCCCTGTCTCAGTGATAAGGGTCATAATTCAGCACCTCTGATTATCAAACCTGTTAAACAGTCTGCATGAAATTCGCTTCCTAAAGACACTAACTTTACACCAATTGATTCACTCTGATGTTAACAAATTATTACTGAGACTCAAGAGATACTGTATTTTTCAATGTTATGGAATTGCTGTTTGTCAGTCTGAAGTAAATCTAAAAGTAAGTGTAAGTGACTTCATCCTGAGAAGGGTTGACTACAATTATAtaaaactgctttttaaaaagaaaaacttttgaCACATCTGTAATTAACGTCATTTAAACTGTAGCTTAATGTAATGCTTAGTGCGTTATGGCAGACTACACCAACTCACTTTCTAcacattaacatgaatatgaatatgtaacaaaaatggaaaacatcagtgaataaataaataaaatgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394831 lncRNA downstream 34579 16737168 ~ 16760431 (-) True LOC117595808
XR_004576992.1 lncRNA downstream 34587 16749548 ~ 16760423 (-) False LOC117595808
TU394562 lncRNA downstream 154243 16639164 ~ 16640767 (-) True G333197
TU394528 lncRNA downstream 172997 16620758 ~ 16622013 (-) True G333175
TU394284 lncRNA downstream 482131 16312043 ~ 16312879 (-) False cpa6
TU394846 lncRNA upstream 83236 16885207 ~ 16886322 (-) False myd88
TU394848 lncRNA upstream 83236 16885207 ~ 16886322 (-) False myd88
TU394873 lncRNA upstream 88213 16890184 ~ 16890991 (-) True G333427
TU394874 lncRNA upstream 89157 16891128 ~ 16891364 (-) True G333428
TU394875 lncRNA upstream 89466 16891437 ~ 16891827 (-) True G333429
XM_034298006.1 mRNA downstream 95060 16687722 ~ 16699950 (-) True csrnp1b
XM_034297874.1 mRNA downstream 482094 16281271 ~ 16312916 (-) False cpa6
XM_026938123.2 mRNA downstream 482095 16281271 ~ 16312915 (-) True cpa6
XM_026938228.2 mRNA downstream 520499 16220089 ~ 16274511 (-) True arfgef1
XM_026937858.2 mRNA upstream 18258 16820229 ~ 16829385 (-) True slc22a13b
XM_034298107.1 mRNA upstream 27819 16829790 ~ 16879884 (-) True oxsr1b
XM_026938292.2 mRNA upstream 83180 16885151 ~ 16889424 (-) True myd88
XM_026937850.2 mRNA upstream 91013 16892984 ~ 16952065 (-) False map3k22
XM_026937851.2 mRNA upstream 91013 16892984 ~ 16938316 (-) True map3k22
TU393587 other downstream 1729200 14965813 ~ 15065810 (-) False LOC113541115
XR_003404167.2 other downstream 1857606 14936886 ~ 14937404 (-) False LOC113541102
TU392350 other downstream 4117077 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 4117077 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 5711859 11082268 ~ 11083151 (-) True G330379
XR_004576965.1 other upstream 28725 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 28725 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 314127 17116098 ~ 17139685 (-) False zbtb47b
XR_004576994.1 other upstream 383553 17185524 ~ 17239106 (-) False vipr1b
TU395488 other upstream 1105923 17907894 ~ 17908812 (-) False LOC113541127

Expression Profile