RNA id: XM_026937813.2


Basic Information

Item Value
RNA id XM_026937813.2
length 2575
RNA type mRNA
GC content 0.41
exon number 1
gene id rrs1
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18420986 ~ 18423560 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agaagaagaagaggagcaCGTGGGAATCTTGTATTCAAGATGGCGGCGTGCAGTATTGAAGACGTGCTCGCTAAAGCCGAAAAAGACGAGGCAGAAAAGTTAAAAAGTATCACAGTACATAAAGAATTAGACCTCGAGTTTGATATCGGAAACTTGCTGGCGTTGGACAAGAACTCGATAAACACTCGGGAGTTTAAACAGCAGAATAAAGACGAGTTTCTTCGCTCACTGGCTCGGGACAACACTCAGCTGCTCATTAATGAGATCTGGAAACATCCAAGCGAGAAGGTAGAGGAGGTTATCGTGGTCAAGCTGCCGGACCCCATCACCCAGTTACCCCGAGAAAAGCCCGCTCCCAAGCCGAGACCCCCGACCAAATGGGAGCAGTTCGCCAAACTGAAGGGCAtccagaagaaaaagaagactaATCTGGTGTGGGATGAAGTGCACAAGGAGTGGAAAAGGCGCTGGGGCTATAAACGAGCCAAAGATGACACGAAGGAATGGCTCATAGAGGTGCCTGAAAACGCTGATCCAAATGAGGACCAGTTCGCCAAAAGGAACAAGGCCAAGAAAGAGCGAGTGGCCAAGAATGAGTTTAACCGCCTGAAGAACATCGCCAGGGCGCAGAAGCTGAAAGTCCCCGGCGTGGGACTCGCTCCAAGCAGCCAGCAGTCCAAAGCAGAGCTGGCCAAAGCTGTGAGTGTGGCCAAAACCTCCACAGCTTCAGTGGGGAAGTTCCAGGAGCGACTTCCTAAAGAGAAGCCGCAGAGAAACACAGGCAAGAAGAGACAGTTCCAGCCTCTGATCGGTGACTTCGCTGGAGAGAAGCAGAAGCACCTGGAGATGCTCAAAGTGATGGAGAGCAAGAGACCTCGCCTGGACATCACCAAAGCGGTGAATAAGCAGATGAGGGAGGAAGACAGTGAAGCTTCGGAAAGGAGGAGGGGGAAGAAGGGACGGAGAGGGAACGCGCCTGGAAAAGGGAGACGAAATGCCCCAAGTGGGAAAGGAAAAGGGAAAGGGAAGGGGGGAGCTTCCAAAGGCAAAGGACGAAAACCTGCAATGAAGCAGGGCAAACGTTAAAATAGACTCCTAAAGCTTTAGTGAAATCTGGGACTTGTATTTGAACCCCAAACACACCTGAGCCTGTCGATGAGCATCACTCAGAAATAaagtacttttccttgtcactggggtgctGTCATCCATCATACATCtttattatgtatgttttaCTTGGAAAGATGCATCGGTGGTCCTTAAGGATAAATGATGTActtctaaattatttttaaaggtgaaaaatgcatattaaaggtacaaaagatatccCTGTGATGATACTCCTCCAGAGACAAGTGAAGAtacagtttaatgttttttatttctgagaatgtaCACACTGATATGATAATATTGCAATAATACTTTTCTGATCATTTTGTCGGTGTTTTCTGCACTTCTAAGAGAATAACCAACTCTTATTGCagtaacagattttttttttcatatttttcctgttttatgaatggaaaaaaaactgccCTTTGACGCTTTGTCAGCAAATCATACCGTTCTGAAATAATGCAATGTACATCAAATATCGTTAGAACAACTTCAGATGTAATGATGTGaatatttttgctcttttgtaACTAAAGCTGGAACAGAATAGATTTTGGACTGGAACCACCAGAACTATTACATGGGACACATCGCAGCCCTGTCCTGCATAGTTTAGTGCGTGATTTAATCTTAATTTATCGCTGTCCAGATGTTTAGTAGCATCTGGATATTAAAACTAGACGCAGGAATCTTTCAGCATGGTTGATGTTCAAAAACAAGAACCATGCATCCCTGCCTGAAATATAGAGTTTAGTGTTTGAGATACTGGGATATTGGATGTACTTTACTTGTCATGACATGACTCGAAGTGCCTTGTCTTATTTTGACGAGTAGCGATAcgtgatatggcaaaaatagTTACTTGAAGGTGCCATTACAATACTCAGTATGTATTACAAAATTTAGTTTTGCTAACAAAGAACCAACAAAGCATTGTATCTATACAGCCAGTGATTTTTATTCAAAGTTTACATTAAAGATAAAATATTTGAATCAGAAAAATTGGTAAATAATTAAGGGGAAATAAGGGGGCGATGTTATCAGCAAGTGACAGTGGCGTTTCAAAAGCACTGACATACGCTCAGAAAAGGTTtgtcttaatattaatatattagaatactgatatcatcatcatcatcatcattatcatcgtCTTGCCCAGCCACATTGATTaggattttgaaatgaaaatctgaaaagatttaatttttttttttattatttttttgtgtgttgtcgGCAATTTagaatatcagaatgtattcatattttttctaaaattacATGAGATGTATATTAAACTGTTTTATGCGTCATACTTGTAATTGTTATCCGGCATGAGAAAACCAGAGGATGTTTGTTATTGGTGCTTCAGATTCTGTCACGTCTGTGAAAACTGATTTTGCTTTTCACAAAGGtttttgaataaatataatgatattatCGA

Function

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K14852 RRS1; regulator of ribosome biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395716 lncRNA upstream 96101 18296643 ~ 18324885 (+) True G334120
TU395714 lncRNA upstream 96162 18302862 ~ 18324824 (+) False G334120
TU395656 lncRNA upstream 217306 18203063 ~ 18203680 (+) True G334077
TU395657 lncRNA upstream 218081 18200395 ~ 18202905 (+) True G334078
TU395608 lncRNA upstream 312182 18085319 ~ 18108804 (+) True G334032
TU395829 lncRNA downstream 12161 18435721 ~ 18437406 (+) True G334209
TU395830 lncRNA downstream 15589 18439149 ~ 18439446 (+) True G334210
TU395831 lncRNA downstream 16695 18440255 ~ 18440656 (+) True G334211
TU395842 lncRNA downstream 51124 18474684 ~ 18478739 (+) False mcmdc2
TU395840 lncRNA downstream 77223 18500783 ~ 18530907 (+) True G334219
XM_026938222.2 mRNA upstream 30121 18380291 ~ 18390865 (+) True trim55b
XM_026938223.2 mRNA upstream 30121 18380445 ~ 18390865 (+) False trim55b
XM_026938225.2 mRNA upstream 42790 18372722 ~ 18378196 (+) True dnajc5b
XM_034298031.1 mRNA upstream 97691 18315354 ~ 18323295 (+) False mtfr1
XM_026937924.2 mRNA upstream 203780 18214863 ~ 18217206 (+) True bhlhe22
XM_026938083.2 mRNA downstream 29547 18453107 ~ 18467245 (+) True sgk3
XM_026938084.2 mRNA downstream 29826 18453386 ~ 18467245 (+) False sgk3
XM_026938085.2 mRNA downstream 31029 18454589 ~ 18467245 (+) False sgk3
XM_034298210.1 mRNA downstream 44318 18467878 ~ 18474659 (+) False mcmdc2
XM_034298211.1 mRNA downstream 44462 18468022 ~ 18486009 (+) True mcmdc2
trnaa-agc_16 other upstream 40972 18379942 ~ 18380014 (+) True trnaa-agc_16
trnaa-agc_15 other upstream 41612 18379302 ~ 18379374 (+) True trnaa-agc_15
XR_004576962.1 other upstream 97691 18315358 ~ 18323295 (+) False mtfr1
TU396015 other downstream 269589 18693149 ~ 18717953 (+) True G334373
TU396386 other downstream 915646 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 915646 19339206 ~ 19427936 (+) False dap
TU396389 other downstream 915646 19339206 ~ 19360737 (+) False dap
TU396390 other downstream 915646 19339206 ~ 19360737 (+) False dap

Expression Profile