RNA id: XM_026937814.2


Basic Information

Item Value
RNA id XM_026937814.2
length 2485
RNA type mRNA
GC content 0.42
exon number 6
gene id si:dkey-97a13.12
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18396227 ~ 18432150 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACGTCGCCAAGGTGGCACTGGTGCCACTTGTGAAAGAACTTTAACTTCTGTGCAAGGCCATGAGTCAGAACAGAGAGATCGCTGGATTAGTGAGTGGAGTTTATTTAAAGGAGACGGAGAAAGTGAAGCAGTCAGTGTGTCTCGCTGATACAGGATTCAGGATGCAGCACATTTACATGCAGAGTGATGAGCACTTCCAAGTCTTCACCACTGTCCTCACGCCTCAGGtaagaagaagaagacgacaCCGGTACAGATGTGAAGAACCAGATAAGGTGGTGGTAGCACACAGTTACGTCCCTCAGTGGCCAGATGAAATGGAACTGACTCGTGGTGATATTGTCCAAGTCCTTTCCAAGCAGGATGAATCCAGGTGGTTTGGGCAGCTGCGGAACGGACAGCAGGGCTACTTTCCTGCCTCCTGTGTCATCGAGCTGAGTCATAACACAGACCATAGGGACGGGGCAGCTAAAAATGATGAAGGTTTAGGGAGACGCTGTTCAGTTCAGGTTGAATCTGTGGTGATCCTTCGGGAACGTGCTGGCGGAGGCAGGCAGCAGGCCCCTAGGGGCGGAGGAAGGGAGGAGGGACCTTTCCTGACTTTGAAGCAGGACGCCCAGGCCCCGTCCTCGGCCCACAGCTCGCCCAGCCTGCTGCACAGGATCCTGTCCAAACATCTCAGAAAGAGCCAGTGCCAGGGGGCCAGTAACGGGGCAATtgaacatgactgaatggcacCGACCTGCAGGACAGCCGAGAGCTCAGCCCACAGTGTGAGTGCTGTAGCTGTTTTGGGATGCCTGAACCATCACAATGTGCTGATTGTTACATAGATACAGTGAACAAGCCCTGCTGTTGCTGGAGTACTGCTGTGTCTGTTAAGTGCTTTTCCACCAAGCAGTGTGGTACAGTATACCAGAACTATTTACCTTCTGGTTGAGAACGTGTGTCTGTTTCCTACTGCATAATGTTACCCGTGAAAGTAGGAGGGGTTCTCAGAAGGAAGTGTGATGGAAACTAATAAAAAGCACAACTAGTCACTCAAAATTTGCAAACTTGTAATTTTCTCTGACATCAAATTAAAAAGGTAGACATACAgcttatattacattaaattacacagTGCATGGCACTGTTCCTTGTCTGCCTCACAGGGAGAATTAATGAGCATGAGACATTGCTGGCCTGCAGTAATGGTGCCAATTGCACCCAAGAGTGTCAATACAGAAATCATACTGAAAATAGAGAGATTGCCAAGAGTAGATTGTCACTTTGTCAAATGACAGTTGTTGCATTAAAAGACAACACAATTCTACATTATGTACATTATTCTACATTATGTTATACCCCATGTAGTGAACATATatactcactgaccactttaataggaacacctgtacacctgcacattcatgcaattatccaatcagccaatcgtatGGCAACAGCACAatccataaaatcatgcagacagaCCAAGAGCTTAAGTTAATATTCatttcaaacatcagaatggggaaaaatgtcatctcagtgatctttgaccatggcatggatgttggtggtgAATAGGCTGGCTTGAGTATTTGGGAACATGCTGATCTGGGAATTTTTAGGTACAGCAgtctacacagaatggtgcaaaaaacaacaacaacaaaaacaaacactgaatgaagctactgccacatgattgcaGTACAAGTGGGTACAAGGAATAcgagtgttcctattaaagtggctggtaaGTGTATGATAAATACACTTTATCATAATGTAAAAATCGAGCTAAATGTCAGCAACAAATGTGGATAAATgcatagaaataaatacatagttCTAGCCAGAGACAGTAACAGGATGATTCTGCCATGATTGTGGTGTGTACAGTTATTATTGGTCCTCACTATTTCATGCAAAAACAGGAACCAAAATCAGCCTGGTACAGATCACCTGTCAAAGAAATATCTACAAAATATGGGACCGGGGATTTATTACCGTGTTGTACTGCACTGTCCAGTGGAAAAGCACTCTAAGTGTACTGCAGGAGAAAATGACTACAGTCCAGTGACAACATCACTAATATGACAAAATGGAATATCAGTGTATTTGCGGTTAAGTTGGGACATGTGGAAATAAACCATAAAAGAGCAGAGTTATATACCAGACGGGGTAATTCTGCAAAATGTTATTATGCTAACTGTAggcctattttttttccagcatccTCTCATTTATTTCCAGACTTTACTCTTTTATATTCCCTTATTTTCCAAGTAAGTCTCTCTGTTTAaacatgtgtttatttttttctttctagtcATTAATTCCTAAACTGTGTAACTGCTGTGTCTTGTGTGTAAGAGATGAAAAGGGTTGGAAAGCAGGAAAAAGAgtaatattctttttaaaaaatgtacatagattaatttttatttttatagacttgtgttttattttaacattttgatgTTATAACTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395716 lncRNA upstream 85751 18296643 ~ 18324885 (+) True G334120
TU395714 lncRNA upstream 85812 18302862 ~ 18324824 (+) False G334120
TU395656 lncRNA upstream 206956 18203063 ~ 18203680 (+) True G334077
TU395657 lncRNA upstream 207731 18200395 ~ 18202905 (+) True G334078
TU395608 lncRNA upstream 301832 18085319 ~ 18108804 (+) True G334032
TU395829 lncRNA downstream 3571 18435721 ~ 18437406 (+) True G334209
TU395830 lncRNA downstream 6999 18439149 ~ 18439446 (+) True G334210
TU395831 lncRNA downstream 8105 18440255 ~ 18440656 (+) True G334211
TU395842 lncRNA downstream 42534 18474684 ~ 18478739 (+) False mcmdc2
TU395840 lncRNA downstream 68633 18500783 ~ 18530907 (+) True G334219
XM_026938222.2 mRNA upstream 19771 18380291 ~ 18390865 (+) True trim55b
XM_026938223.2 mRNA upstream 19771 18380445 ~ 18390865 (+) False trim55b
XM_026938225.2 mRNA upstream 32440 18372722 ~ 18378196 (+) True dnajc5b
XM_034298031.1 mRNA upstream 87341 18315354 ~ 18323295 (+) False mtfr1
XM_026937924.2 mRNA upstream 193430 18214863 ~ 18217206 (+) True bhlhe22
XM_026938083.2 mRNA downstream 20957 18453107 ~ 18467245 (+) True sgk3
XM_026938084.2 mRNA downstream 21236 18453386 ~ 18467245 (+) False sgk3
XM_026938085.2 mRNA downstream 22439 18454589 ~ 18467245 (+) False sgk3
XM_034298210.1 mRNA downstream 35728 18467878 ~ 18474659 (+) False mcmdc2
XM_034298211.1 mRNA downstream 35872 18468022 ~ 18486009 (+) True mcmdc2
trnaa-agc_16 other upstream 30622 18379942 ~ 18380014 (+) True trnaa-agc_16
trnaa-agc_15 other upstream 31262 18379302 ~ 18379374 (+) True trnaa-agc_15
XR_004576962.1 other upstream 87341 18315358 ~ 18323295 (+) False mtfr1
TU396015 other downstream 260999 18693149 ~ 18717953 (+) True G334373
TU396386 other downstream 907056 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 907056 19339206 ~ 19427936 (+) False dap
TU396389 other downstream 907056 19339206 ~ 19360737 (+) False dap
TU396390 other downstream 907056 19339206 ~ 19360737 (+) False dap

Expression Profile