RNA id: XM_026937815.2


Basic Information

Item Value
RNA id XM_026937815.2
length 3165
RNA type mRNA
GC content 0.47
exon number 11
gene id zgc:112982
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17984044 ~ 17995146 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACCCAGTGACGCACTTCCGGGTCACGCTTCATGGAGTGTTTTGGTCGGGAGGCAGCGCGctttcttaattaacattactgcacttttacactttattagCGACAGAAAAGCGTTAATTTTCACTCACGACATTCACATACTATGTGCTGAAATCTGGTATTTTGGTGGACGTTTCGTCTTCTAGCATTTTCAGCACTGAGAAGTGGAGAGGgtGACAATGTCACGACAGCGTTCAAGATCCCCTCTACATTCAAGAACCTCGACGCTGCTCGGAAGGCGAGATGGATATTACGGTGAGCAGTACCATGCACCGGTGCATTCTGATCCTTGGAGAGGTTCAGAAAATGTCGACAACAGAAATTTGGAAAGCGGCGTACGCTGGGATAACGGGTCCTCTGAAGCAGAGGAGCAGGTTGACCACTGGGCCAAGTTCATCGAGGCTATAGGTCGTGCCGAAAAGCGGAAAGCTTCGTCCATGTCGAGGTACCACGCACAGGACGGCGTCCAGAGTTTTGAAGAGGACTCGGCATGCTCTCCGAGACGGCTGCCTAGGGAGAGATTGTGTTCCCCGGAAACTTCAAACTATGGCATGGAAACGCATCAGAGGATTCAGTCTCCAGGCCAGAGGAGGAACGAGCGTGATGTTGCTGATGTAGACAGGCGCTATTCAAGAAGTTCCAGTCCTAGGCATTCACAAGGAAAGAGACACGACAGAATGGAACATGGATATTATAATGAAGAACACGAAGATAGATATGAAAGAAGCTCCTATAGCGAGAGGTCACTCAAGTCAAATTATTCGGAGCATCAACTACATTTTAAAGGATACCAAGATTTGGATCCACAGGAGGAATATACTGTGTCACACAGGGGCTTCAGTCCACATTGTGCCCCTGTTATAGTGGAGCATGATCATGGAATCCCAAAACATGATGCAAGGATCCACAGTCCAGGTAGGGACCGAGAACGTCCAAGGAGCCGCGATCCAGCTAGGGAGCGAGGGCATCCAAGGAATCATGATCCAGGTAGGGACCGAGAGCGTCCAATGAGCCGTGATCTGGTAAGGGACAGAGAGCAACCAAGAAGCGGTGGTCCTGTTAGAGATCGAGAGCATCCAAGGAATCGCAATCCAGTTAGCCAGCGAGAGCATCCAAGGAGCCATGATCCAGATAGGAACCAAGAGTATCCAAGGGGCACTGGTTCTGTTAGGCACCAGGAGCATCCAAGGAGCCATGATCCAGTTAGGAACCAAGAGCATCCAAGGAGCCGTGATTCTCTGAGAACCAGTGACCTACCAAGAGACAGAGGTTATTCAAAAAGCAGTGAACCACAGAGGGGCAGAGATCCCAACAGGGGAAGAGAATCTTCAAGAAGCAAGGAACTCCGTAAACATGGAAGGGATTATAACCATCATCCAGGAACATCCCATGATAGCCCCAGTGGTTCATCAACCTATCACATTAGGGAAGACACAAGATTCCATGCCTCTCTGGCTGAAAGAGGAAGTCCTTTGCAAGGCATGCGACAACACACTGAGCAACCCAGGTTGGGATCACATTCAAGAGAGCCCCATGGACAAAGGGCAGTGGATGATAGAGACTTCAGAGTGAATGAGAGCAATAGGACAAGAGACTCTGTTCATGACTGGGAGGAAGACACGGAACCTAGAGGGAATCATGGTGGTGTGCTGGGACAAGGAAGCGTTCTGAAAAGAAATCATCAACATAGGAACCCAAACCATCCTGGAGCTAGAATGGATTTTGCCGGTCATGAGACTCTCAAGATCAAAGTGGACATGAGTCGTCCTGTGGGCCAGAGCAGCCACTTAGGCTATTCCTCTGAAAGGCAGTTGTCGCTCGATTTGGTCAATGTGGGTCGACAACGTCTCGACTTCCTGCCCATGCTGGAGCATTCTGGGACATTTAGGGAGACGCCGATGCACTCTGGGACCTTCGCACAAGAGATTATCACTCTGGTGCATCAAGTCAAAGAAAATTATTTTCAGGGTCAAGGCACCACACTTAATGAACGTTTCTCTAATGAACAAGAGTATTCTTTGGTGGATGAGTTTGCAGAAGAAGAACAGGAGATGGAGGCCATCGGGCCTGTCGTAAACAGGCCACTTGGTGCCACATCCTTAGACACTCAGATTTTCTGCAAGATTGGGCCGATGCAGTCACAGAGGAAGCCGCatgttcctgttcctgctcctgctcctggtGATCTCAGGCATGACCTGGAGAGGAAAAGACAGGAGCGACTAGAAGGTGTGAAGATCACTATCGCCGGAGGGAACTTCTCTCAGATACTGCCTCAGAGTCAGAAGAATGAGTCTGCATATGTGGGTGATGAAGACCCGCATGAGGCAGGTTGGTCTGAGGAGGTGCCTCGGCAAGCGGAGCACTGGGACGACCCTCATCAAAAAAGACCCACCCAGAATTTCAACGCCAGACGGAATTTCAATCGCGTCCGCAATCGACCTCGTCCACGCACGAAAAGGAATGCAAATAACGGTGCTCGATGGTGAGGAACGGGACAGAAGTGAAGCTCCGGGATCGTAAACATGAGTGTTTCTCAAACTTGCACTCCATTGTTACCGTCTTCATCAGTAGATTGTAACAAGTCTGTCATTTATGTGACATTTCACTGCTAGTCGATGACAGATCCTCATAAATTGCTCATCTTTAAAAGTGATATTTTCACGCTTCACTCATCAGCATGTAAAGAGAACACTGGACAGTGTAGCAATTTACGTTGCCCACTTAAAGAACTTTATGTGCTCAGTTAATCATTTTCATACGCAGCACGAACATGGGAAGTGTTCATGGATAttgcttgtgtttgtttttagagCCACCAGCATTCACCATCACATCAGACCTGTAACTTTTAAGACCCCTCCTTATTAAACAGCTGTTTAATCATATTCACAAAACTGTCCAgagtatattttgtttatattaaagcatttagtttgaatttattaaaaaagaaaaaaagtccaGACAGATTATGTTTCGTTACATTCTGTGCCTCTTTGTTCctcttcattatgttttaatcACTTTTAAGAGAAACAGCTGTGTTTATGTTGAGAAGAATCTCTATCTCTTCATCTAATGTTGTACATATAGTtttgtatgaaataaatatacacaacaATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395528 lncRNA downstream 59255 17924491 ~ 17924789 (-) True G333971
TU395486 lncRNA downstream 77238 17905908 ~ 17906806 (-) True G333939
TU395481 lncRNA downstream 81189 17902633 ~ 17902855 (-) True G333934
TU395479 lncRNA downstream 81661 17899839 ~ 17902383 (-) True G333932
TU395207 lncRNA downstream 441692 17541846 ~ 17542352 (-) True G333700
TU395616 lncRNA upstream 33429 18028575 ~ 18028834 (-) True G334038
TU395628 lncRNA upstream 84007 18079153 ~ 18079979 (-) True G334050
TU395620 lncRNA upstream 99357 18094503 ~ 18099286 (-) True G334042
XR_003404169.2 lncRNA upstream 112551 18107697 ~ 18109070 (-) True LOC113541306
TU395659 lncRNA upstream 146282 18141428 ~ 18202900 (-) True G334079
XM_026938077.2 mRNA downstream 52230 17916084 ~ 17931814 (-) True zmp:0000000991
XM_026938079.2 mRNA downstream 67488 17909324 ~ 17916556 (-) True c22h11orf65
XM_026937923.2 mRNA downstream 75302 17907584 ~ 17908742 (-) True LOC113541127
XM_026938264.2 mRNA downstream 84366 17890350 ~ 17899678 (-) False LOC113541342
XM_026938263.2 mRNA downstream 84368 17890350 ~ 17899676 (-) True LOC113541342
XM_026938207.2 mRNA upstream 2521 17997667 ~ 18019023 (-) False map7d2b
XM_026938208.2 mRNA upstream 2521 17997667 ~ 18019022 (-) False map7d2b
XM_026938209.2 mRNA upstream 2521 17997667 ~ 18012410 (-) True map7d2b
XM_026937803.2 mRNA upstream 26518 18021664 ~ 18026948 (-) True eif1axb
XM_026937833.2 mRNA upstream 34368 18029514 ~ 18077339 (-) True rps6ka3b
TU395529 other downstream 57209 17925075 ~ 17926835 (-) False zmp:0000000991
XR_004576970.1 other downstream 67488 17909938 ~ 17916556 (-) False c22h11orf65
TU395488 other downstream 75232 17907894 ~ 17908812 (-) False LOC113541127
XR_004576994.1 other downstream 744938 17185524 ~ 17239106 (-) False vipr1b
XR_003404146.2 other downstream 844359 17116098 ~ 17139685 (-) False zbtb47b
trnay-gua_3 other upstream 383890 18379036 ~ 18379121 (-) True trnay-gua_3
trnay-gua_4 other upstream 384503 18379649 ~ 18379734 (-) True trnay-gua_4
TU395863 other upstream 447209 18442355 ~ 18442995 (-) False mybl1
TU395862 other upstream 449512 18444658 ~ 18520205 (-) False mybl1
TU396861 other upstream 1580962 19576108 ~ 19578920 (-) False nup58

Expression Profile