RNA id: XM_034297847.1


Basic Information

Item Value
RNA id XM_034297847.1
length 1618
RNA type mRNA
GC content 0.42
exon number 10
gene id terf1
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14945659 ~ 14954679 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agcagaagaagaagaagaagaagaagaagaagactttCGTTCATTTGAGTTTATTTtctcagtttcacacacacacacacacacacacacacacacacacagaaactgaACCTGCACTGCTTGTTGTTCCTGCCGTAGGAACCTGTACACGGCTCTCATTATGGAAAACCAGGCGGTTATATCCAGCACAACAGTCGCTAAAGTGAACATTTGTGAGGTAGAAAGTGTTGCTAAGTCGTGGATGATTGACTTCAGCTTCCTGACATTGTGTCGCTACTACAGAGAGCAAAACGCTGAGAAGTTTAGCAAAACTTTAAAAGTGTTTGAAGCGATGATCGATGATGAGTACCAGCTTCAGGACAATCAGCAAACGAAGAGAACCATCTGCTGCTTGCTCTCCAGAATTATGGACGGCAAAAACTTGGATGCGCATTATGACCTGAATAACAAAGTGACTCCTCTGATGTCGGCTCTCTCGGTGTGGGACTGTCTAAAGGACACTGCAAACGACGCTGCACTATACGACAACATAAAGAACCTGTTATTTATTCAGtgtgttggtgtgtgtttggagaaAGGAAATGCTCAGCtcgcagcacacacactgcagtggctgGAGAAAGAGAGTGATTTACCGGAGaAACTGCAGAGGAAACTGTCTACTGTTGTGTCTAAGAAGGATGTGTACGATCAGCTCCTAACGAGGTTCTCCTTTAATCACCTAATGAAGAGTGTGAACTCATTCTTGGACGCATTCCTTGAGAAACATCCTTCTGACTTTTTATTTAAGGCTGCCTTAAAAGTGGTTCAGGTTCGTCAGGAGAGACCCGCGCAGGCCGACGTGGATCAGAACAGTGAGGACCCAGAACCAGACAGTCCTGTAAAGCCTGAGACAAATGTTGTTTCGTCAGAGCTTAATCTGAGACCCAAAAAGAAGCTCTTCTCTACTAAAACTGTTCATCCCTGGAAACCCGAAAGCACAAAGAAACTGCCGTGTCTTCCTCACCGAACAGCCAAATTGATATCCAGAAGGAGTTGTAAAGTGCCATCACCACCACAGCAAAACACCATCTCCAGATACAGAACCAAGAAGAAGTGGCTCAGCGAAGAGGACCAGCACCTGAAGGCAGGAGTGAAGAAGCACGGTGAGGGGAAATGGTCCAAAATCCTGGAGGAGTTTGATTTCAGAGATCGGACCAGCGTCATGCTGAAGGACAGGTGGAGGACGTTAAAGAAACACGGAAAGGTTTGAAACCGTGAACACAGAGCCCTAAATGTATACGTTTTTCTGTAATACTGATGCTTTAATGATCCTGTAATGATGCTGTGCCATCTCCAGattctttcatttcaaaatttattattagatgAAATAAAACTCCAAATAAAAAAGTGAGTTGCATTTTAAGGTGCCTCAATGTGGACACTTTTGTCTGCATCTCTACAGAattgtacatatttttttttactgtttaatatGAGCGGGTGTAAATAATGTTtgtactgttctttttttttttattattatatataagcATGCAAAAGTGAATGTTGAAGCTTACAATGTACCAGAAATAATATTCCACAAAAATGCTCCAAATAAACGGGAGTGGATGAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0000781 chromosome, telomeric region cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393373 lncRNA downstream 148461 14714217 ~ 14797198 (-) True G332196
TU393330 lncRNA downstream 310733 14544032 ~ 14634926 (-) True G332164
TU393312 lncRNA downstream 380955 14537252 ~ 14564704 (-) True G332147
TU393340 lncRNA downstream 423044 14513735 ~ 14522615 (-) True G332169
TU393844 lncRNA upstream 390594 15345272 ~ 15397132 (-) True G332580
TU393913 lncRNA upstream 611509 15566187 ~ 15566646 (-) True G332637
TU393941 lncRNA upstream 660822 15615500 ~ 15618841 (-) False sec61g
TU393956 lncRNA upstream 665828 15620506 ~ 15620717 (-) True G332676
TU393962 lncRNA upstream 675545 15630223 ~ 15630444 (-) True G332682
XM_026937894.2 mRNA downstream 8255 14932995 ~ 14937404 (-) False LOC113541102
XM_034298171.1 mRNA downstream 8255 14932996 ~ 14937404 (-) True LOC113541102
XM_026938257.2 mRNA downstream 234837 14702024 ~ 14710822 (-) True tram1
XM_026937935.2 mRNA downstream 250051 14635686 ~ 14695608 (-) False ncoa2
XM_026937904.2 mRNA upstream 8159 14962837 ~ 15065765 (-) True LOC113541115
XM_026938082.2 mRNA upstream 157020 15111698 ~ 15120918 (-) True dcaf11
XM_026938192.2 mRNA upstream 274538 15229216 ~ 15245025 (-) True rdh10a
XM_034298262.1 mRNA upstream 312680 15267358 ~ 15269264 (-) True LOC117595804
XM_034297841.1 mRNA upstream 318448 15273126 ~ 15275076 (-) True LOC117595763
XR_003404167.2 other downstream 8255 14936886 ~ 14937404 (-) False LOC113541102
TU392350 other downstream 2267726 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 2267726 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 3862508 11082268 ~ 11083151 (-) True G330379
XR_003404157.2 other downstream 4014884 10923126 ~ 10930775 (-) False ackr4b
TU393587 other upstream 11135 14965813 ~ 15065810 (-) False LOC113541115
XR_004576965.1 other upstream 1876018 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 1876018 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 2161420 17116098 ~ 17139685 (-) False zbtb47b
XR_004576994.1 other upstream 2230846 17185524 ~ 17239106 (-) False vipr1b

Expression Profile