RNA id: XM_026937825.2


Basic Information

Item Value
RNA id XM_026937825.2
length 2711
RNA type mRNA
GC content 0.41
exon number 6
gene id gdap1
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14475937 ~ 14482845 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACCTGTTAATAAAAACTGAATATTGTAACAGCGTCTCCGCTGCTTGTGTACTTTTGTTGTAAGACTCCGTTAGAGGTTCTTTCCCTTGTATTGACATTTAAAATGGCGGCGCAGGACGAGAAGGAGTCTCTCCTCCAGGAAGAGACAGGTGCAGAGATGCTGAAAGGCAGCGAGGGAAAAATAGAGAGCACCAAAAAGAAAGAGTCGGAACTGGTTCTGTATCACTGGACCCAGTCATTTAGTTCACAGAAGGTGAGGCTGGCCATAGCTGAGAAGGGTTTGCAGTGTAAGGAGTATGATGTGAGCTTGCCTCTGAGTGAACACAATGAGCCATGGTTCATGCGTCTAAACCCAGCCGGCGAGGTTCCTGTTCTGGTGCATGATGATCGTGTCATCTGTGACCCAATTCAGATCATGGATTACTTAGAGGAAACTTTCAGTGATGAGAAAACGCCAAAGCTGATTCCAGAGACAGGGAGTACATATTATCACAGAGTGCAGCATTATCGTGAGCTGCTGGACTCACTGCCCATGGATGCTTACACACATGGCTGCATTCTCCATCCTGAGCTCACTGTGGACTCTCATATCCCGGCCTACGCCAACACACGCATCCGCGCGCAAATCGGGAACACGGAATCTGAGCTGAAGAAACTGGCAGAAGAAAACCCAGAGCTTAAAGATGCTTATATCTCAAAACAGAGGCGCCTAAAAACAAAGCTGTTTGATCACGACAATGTGAAATATCTGAAGAAGATTCTGGATGAGCTGGAGAAAGTTATGGATCAGGTGGAGACCGAGCtgcagaggagagcagaggagacACCAGATGAAGGAACTCAGCAGTCGTGGCTGTGCGGCGAGTTTTTCAGCATGGCCGATGTTTCTCTCGCCGTCACGCTCCATCGGCTCAAGTTCCTCGGCCTCTCGCGTCGTTACTGGGGCAACGGCACGCGGCTCAACCTGGAGTCATACTACGAGCGCGTCCTGGAGCGCCCTACATTCCGCAGGGTCCTCGGACACGTCAACAACATCCTCATATCAGCCGTGTTACCAACTGCTTTCAGAGTGGCCAGGAAAAGAGCACCCACCTTCATAGGCACCACAGTGTTAATTGGATTATTAGGAGGTGCAActtattttgcttttctttattttaaaaagcgcCTGCTTGTGTCCTGAAGTAGCCATAGTCATTTTCATGgcctcatctttttttttttattatttttttttttttacatttagtaaAGCCTatgcatatatactgtaatttctGGACTAGAGGAGATGGGTTGAGGGATTGTACAGCAAAATGATGTGTATGTGACATTATTCTGATTGTAATATTCATTTGTTAATCATAAATATTCTCATTGAGATACTCACCATATACTTGAattaattttcacaattttcaaAGATTTTACAAAATGTGACAGAATCTATCAATTTagtgtttttatccatttttctcCCTAACACAatacttttttcagtttctgaTGACGTGCTGGTGAACTGTTAAGGGTTAACcatgctatttaaaaaatggttctCAAAGCTAACacgatgaaaaagaaaaatcattacTTAGAAATGTTTTGTAGCACTTGGGCAAAACCTGACATATTGAGATAATGTAAAAAGTTAGCTACTAAATAGTAAAATGGTATAAAGTATCACCTAGCCCAGGCTCAACTAAACTTGTTCATATAACTTGTCTAATTTAGTATGCTCCATGTTTGCAGAGATCATTGGTTggctaacttagctagctagcgaaATTGGTAGTAACCTTGTGttagcaggaggtttttactttcatacaaGTGAGTGTGAGTCAGATTTGAAGCTCAGATAAAGATCAGTCCTTAGGAACAGCCTGGTGAGGGTCACAGTCTTCTAAATtaagctactagtttgtttatattttgggaaatagaccccactaaattataaatatgataCCAAAGACGGAATTAAAAACAGTCCCACACACGTGTCTCGAGTGAtatagctgaggttgaggaactgtcagagctagAATTcacccattcccatgttagtgagGTTTTTATTATAGCACTGCCACACAAGCATTTTCAGTACTTTGTGACTTATTCATcaaagcaagtgtgtgtgtgtttatgtcaaTGAGATCATTTGCGTCTCAGGATTGTTTTATTGTCCAGAAAATACAGTCATTGTGAAAATATATGCACattaagcactttttaaaatcaaaagttATGTGTAGAATGTGATAAACACCCTCTTTATTCTGTCCTGAATTTTCCTCAGTGACTAATGCGCATTACACTAGTGAGCATGTGCTGGTAATCGGCTGTACCCTTACAATAAATATGATTTGTCATCGtgcacatttcaaaataatatcaTAAAACCAATGTATATGTTTGGTTTCAGATGTTTTATTCAGAAAGTGTGACAGAAACTTAGGCAGTTCTCATGGTTTGAAAATGCAATATCAGCACATTCCTGTTCAGTATCACATACATGGGAGGTTGTGGCATCTCATGACTGGTTTATTTAGTGAAGCTGTGTATTTAATTAGGCTTGCATTCTGTACCAGGAAACAGTGAACATCCTAGTCAGATAAAACACTTGGCTTTTCTTTAACTGTGTTGAATAGAAGTGTTTGAAAACTGTCCTatactataataaaataactcaGTATGGCAATGCA

Function

GO: NA

KEGG:

id description
K22077 GDAP1; ganglioside-induced differentiation-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393198 lncRNA downstream 9324 14466394 ~ 14466613 (-) True G332056
TU392965 lncRNA downstream 716647 13758929 ~ 13759290 (-) False LOC113541105
TU392679 lncRNA downstream 1062126 13412902 ~ 13413811 (-) True G331569
TU392678 lncRNA downstream 1068479 13406386 ~ 13407458 (-) True G331568
TU392674 lncRNA downstream 1093502 13380609 ~ 13382435 (-) True G331565
TU393340 lncRNA upstream 30890 14513735 ~ 14522615 (-) True G332169
TU393341 lncRNA upstream 34794 14517639 ~ 14521648 (-) False G332169
TU393312 lncRNA upstream 54407 14537252 ~ 14564704 (-) True G332147
TU393330 lncRNA upstream 61187 14544032 ~ 14634926 (-) True G332164
TU393373 lncRNA upstream 231372 14714217 ~ 14797198 (-) True G332196
XM_026938127.2 mRNA downstream 46567 14419894 ~ 14429370 (-) False pi15a
XM_026938126.2 mRNA downstream 46567 14419894 ~ 14429370 (-) False pi15a
XM_026938125.2 mRNA downstream 46567 14419894 ~ 14429370 (-) True pi15a
XM_026938151.2 mRNA downstream 102484 14313082 ~ 14373453 (-) False dok6
XM_026938150.2 mRNA downstream 102484 14313082 ~ 14373453 (-) True dok6
XM_026937932.2 mRNA upstream 53717 14536562 ~ 14540764 (-) True thtpa
XM_026937902.2 mRNA upstream 95940 14578785 ~ 14586869 (-) True ngdn
XM_026938179.2 mRNA upstream 135198 14618043 ~ 14629435 (-) True prdm14
XM_026937935.2 mRNA upstream 152841 14635686 ~ 14695608 (-) False ncoa2
XM_026937934.2 mRNA upstream 152841 14635686 ~ 14695608 (-) True ncoa2
TU392350 other downstream 1798004 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 1798004 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 3392786 11082268 ~ 11083151 (-) True G330379
XR_003404157.2 other downstream 3545162 10923126 ~ 10930775 (-) False ackr4b
TU391129 other downstream 3952674 10522732 ~ 10523263 (-) True G330185
XR_003404167.2 other upstream 454041 14936886 ~ 14937404 (-) False LOC113541102
TU393587 other upstream 482968 14965813 ~ 15065810 (-) False LOC113541115
XR_004576965.1 other upstream 2347851 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 2347851 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 2633253 17116098 ~ 17139685 (-) False zbtb47b

Expression Profile