RNA id: XM_026937830.2


Basic Information

Item Value
RNA id XM_026937830.2
length 2611
RNA type mRNA
GC content 0.39
exon number 4
gene id xkr9
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14714795 ~ 14721577 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGCCggaatgggtgtgtgtgggaataTTACGTCATATTGTAATTttgacacagagacacaaagaaGGGAGTGGTGATCTCGAGTTATGAGAATGCACAGACATTCAAAGAAACGGAGGAAGCAGAAGTGTGTGAGCTCTCGTAAGATGATGAAGCTGAAAATGTATTCCCAGTCTGGAAATCCTGCAATAACAAAATTACGGGACCACACAAACATGGATGTTCACCTAGCTCGTCTCTGATATCAAAGCCATGGGCTTTACTAGATTCCGGTGGATCTGCACTTTTGTTGGACTGGTCTTCTCTGTGGTGGATATCGCATCGGATTTCCTTCTGAGCTTGCAATATTTCAGGGAAGGACACTACACCTGGTTTGCACTGACACTCATATTTATTCTCATCGGATCTCTGTGCACACAGATTTTCAGCTACTCTTGGTTTAGGGATGATTATAATGACGACGAGGAGACACATACGTATGCAACTCATATGGGCTTGCTCCATCTGTTACACCTAGGCTTCTTCACCAGGTACTATGATCTGCTGAAGAGGAGCTTTAGTTGTGTATGGAGGGCACGCTCCAGGTCGAGTAATGAGATGGAGCTGTTTGGGTTGGCGGCTGATCTGAGCATGCTGCGGCTGATGGAGACATTTCTGGAGAGCGTTCCTCAGCTTCTCTTGCAGACATACATCATGCTGCAGCACCAACGCACCTCCAAACTACAGTATCTTAGCATGGTCGTATCCTTCCTAAATGTAGCCTGGAGCACAGTGGATTACTGGCGCTGTTTACGCAGATCGCTCCCCAACACCGAAGAAATGCCACGTGGAATTCCTACAGCCATCTACCTGTTTTATAAAATCTTAACAATCACCGCCCGCATTCTGAGCCTCGCTCTGTTCATCATGCTGACTCCCTATAGCATCTTGGTGTTATTTTTCATGTGGCTAATAATGACCTGGGGGGCTCACGTGGTAAAAACTAATTTCTGCACATCGCTGTGTTTGGAGGAGCTTTATCGCAGCGTCGTCGGGGTCATTCTCATCTTCACCTTTTTCAacataaaaggaaagaaaaccaaaaaagaaATGAGCATATATTACATGATTGTCACGCTGCATAACTTCTTAGCTCCTGTTCTCCTGTTCCTGGTCATACCGAGGACTGCAGAATCAGACTTCTTTTTACCCGTAACAGTTTTCATATTATTATCTAATACAATGGGACTGGGATTCCTGATCCTCTACTACAGTGCTTTACACCCGCGGAATCAAAACGAGTCAGATGCAGTGGATGGAATGGTCACAGTGAACACAAATAATTCCTACACTACAAGTCGTTCAGACAGATTTTTAAGACTCTAACAACTTGAGGATGATGTTTCAAGTCTCAGGGAAGctaaatttgtttttaagttAATGTTTGTCTTGTATGCACAAAGTCTAGGTAATATTCAGAGTTCCTAATGTTTACAATGTGTACAAACTCTTAACCAGAAGTACTCTCTTTTTCATGTAAAGTGGCTGAACTTTTCCCACAGAGCTTTTATCAAAACTGCACATTCCTCCTTAAACTGTGTTTTTGAATGTGTTTGGGTCAAACACAAAACTAATCTATTGAAAACTAGAGCAAAGCCAGCAAGCAAGTGAAAACTAACCCAGCAAGTACAAGCAAGCCTAGCAAATGTAGCGAGCAAAAGCAAACTACTGAGCAAAAGCTACCTTTGcaagctaacctagcaagcaAAAGTtaacctagtgagtgaaagcttaCCTCTttaatgcataatgcataacAGAGTGTTGGTTTTAAAGGCCAGCACCTGTACGGAGGAATCAAGctgtacatcatcatcatcgtcatcatcataatcaactttggggaaaaaaactccaccattaaaatcttttttatagattttaatgGTGGAGGTATATATAAATACCTAAATACCTTATAAATACCTAACCTTAACCCATAACCTACTAATACATACGTTtggttattatagaaacaaatTACTATTTTCCATTGTGTTTCATTGTGCTCTCTGGGATATAAAAGTGTTCTTTTCACATTAAAGTACATGAATATCAAAAGCAATATAAGCTAGAAAAGATCCATATCATCCTACTTGTGGAAGCTGGTTTTGCTGATTTTGTAACACAGGTAAAAGACTGAACTCTTAGGACTACTGAAGGattattatgaaaattatgaaaCACTGAAGCACTTTACTTAAAGCTGAACCTTATCACttaacatttttccaaactaaATACACTTTGATTTACACACGTTGATTGCTGTAAGCATAGCTGTAAATGCGATTTTCCAGAAACTCTACTCAAATCTTTCAACACGCTCAAACATTCACACATGTTTATCTCATATCATAAGCAtgaacaaatgtatttatttttacatggtGCACTCTTGATAtcactttaatataaaataaattatgtatatCATGtcttataattttaaatttaataaaattaaattctagTGAGAAGATGATTTGTACCTGTCCAACACCAATAACCAGGAAAAAACCACCAGGTGGTGCTATGCTTCAAAAATATGTACTACAACCACTTTCTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393268 lncRNA upstream 11525 14688163 ~ 14703270 (+) True G332111
XR_004576995.1 lncRNA upstream 752611 13958024 ~ 13962184 (+) True LOC117595809
TU392599 lncRNA upstream 1332159 13380644 ~ 13382636 (+) True G331502
TU392593 lncRNA upstream 1352093 13361369 ~ 13362702 (+) True G331496
TU392595 lncRNA upstream 1353777 13360280 ~ 13361018 (+) True G331498
TU393426 lncRNA downstream 223414 14944991 ~ 14945212 (+) True G332238
TU393440 lncRNA downstream 234283 14955860 ~ 14956067 (+) True G332248
TU393531 lncRNA downstream 344398 15065975 ~ 15113514 (+) True G332334
TU393529 lncRNA downstream 390086 15111663 ~ 15112523 (+) False G332334
TU393555 lncRNA downstream 480240 15201817 ~ 15202305 (+) True G332348
XM_026937982.2 mRNA upstream 137552 14566563 ~ 14577243 (+) False pabpn1
XM_026937980.2 mRNA upstream 137553 14565792 ~ 14577242 (+) True pabpn1
XM_026937981.2 mRNA upstream 139165 14565793 ~ 14575630 (+) False pabpn1
XM_026937931.2 mRNA upstream 150121 14543991 ~ 14564674 (+) True zfhx2
XM_026937930.2 mRNA upstream 150121 14543991 ~ 14564674 (+) False zfhx2
XM_034298216.1 mRNA downstream 75067 14796644 ~ 14848084 (+) False eya1
XM_026938195.2 mRNA downstream 75067 14796644 ~ 14848083 (+) True eya1
XM_026938197.2 mRNA downstream 75067 14796644 ~ 14848083 (+) False eya1
XM_034298215.1 mRNA downstream 75067 14796644 ~ 14848083 (+) False eya1
XM_026938198.2 mRNA downstream 75067 14796644 ~ 14848083 (+) False eya1
trnat-agu_17 other upstream 1329521 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 1456379 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 2002117 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 2558008 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 2966236 11738158 ~ 11748559 (+) True ankha
XR_004576981.1 other downstream 530058 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 844598 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 2385895 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 2385895 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 2563505 17285082 ~ 17300011 (+) True G333388

Expression Profile