RNA id: XM_026937832.2


Basic Information

Item Value
RNA id XM_026937832.2
length 4442
RNA type mRNA
GC content 0.45
exon number 21
gene id rps6ka3b
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18029514 ~ 18077339 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagctgaTAGAGAACATGGGGATCTCCAGCCTTCTCTGGAAGGGGACTTTGGAAGGGAAATCTCGCACTTTGGATAGAACACACCCCTCCTCTGGGCTTCCCCTTTAGTCACTTAGTCCTGGACATGCGAATAATTGGGACACACTCTATGGTttctattcacacacacactcgtgagCTGAAGCGGGGCTTAAGTGCAGTAATGGACGGGGGTAAGGCCTGGGCTCTGGCGCTCAGGGAAGCACTGGCGTGTGCTGTGCGTTTCAGACTCAAGGCTCTCCGTCGTCTCATCTACAGGGAGCCTCCGAGATTCTTCAGCCAAACTGATGACGTTCCGGTGAAGGAGATCAGCATCACGCATCATGTTAAAGAGGGCTCGGAGAAGGCCGACCCCAAGCAGTTCGAGCTGCGCAAGGTCCTGGGCCAGGGCTCCTTCGGGAAGGTGTTTCTGGTGAAGAAGATTACCGGGCCGGATGCAGGACAGCTCTACGCCATGAAGGTGCTCAAAAAAGCAACACTGAAAGtacGCGATCGTGTCAGGACTAAGATGGAGCGAGACATCCTGGTGGAGGTGAATCACCCGTTCATCGTTAAGCTGCACTACGCATTCCAGACAGAGGGAAAGCTTTATCTGATTCTCGACTTCCTGAGAGGAGGAGATCTGTTCACTCGTCTGTCCAAAGAGGTGATGTTCACAGAGGAGGATGTGAAGTTTTACCTGGCTGAGCTGGCTTTGGCACTGGACCATCTGCACGGACTGGGAATCATCTACCGAGACCTCAAACCAGAGAACATCCTGCTGGACGAAGACGGCCACATTAAGCTGACGGacttCGGCCTCAGTAAGGAGTCGATCGATCATGAGAACAAGGCGTACTCGTTCTGCGGGACGGTGGAGTACATGGCTCCCGAGGTGGTGAACCGgcgaggccacacccacagcgcTGACTGGTGGTCGTACGGCGTACTCATGTTTGAGATGTTAACCGGGACGCTTCCCTTCCAAGGCAAGGACCGCAAGGAGACCATGACCATGATCCTAAAGGCGAAGCTGGGCATGCCGCAGTTCCTCAGCTTGGAGGCTCAGAGTCTCCTCCGCAACCTGTTTAAACGAAACCCCTCCAACCGGCTGGGTGCAGGTCCAGACGGGGttgaagaaataaagagacacCACTTTTACGCCTCTATTgactggaatAAATTATTTCGGAGAGAGATTCAGCCACCTTTCAAACCTGCTTCTGGGAGACCTGACGACACGTTTTACTTCGACCCAGAATTCACAGCTAAAACTCCCAAAGactcaCCAGGTGTGCCCCCTAGTGCCAACGCCCATCAGCTCTTCAGAGGTTTCAGCTTCGTGGCCATCAGCACAGAGGAGGAAACACAGCCACTGCAGAGTAACATGAGCTCTATAGTGCAGCTTCACAGGAACACGTCTCAGTTCAGCGACTCGTACGAGGTGAGGGAGGACATCGGCGTCGGCTCATACTCCATCTGCAAGCGCTGCATTCAGAAAAGCACGGGCATGGAATACGCCGTCAAGaTCATCAATAAAGCCAAAAGGGATCCGACGGACGAGGTGGAAATTCTCTTACGCTACGGCCAGCATCCCAACATCATCACTTTAAAGGatGTGTATGACGACGGCCGCTCGGTTTTCCTGGTGACGGAGCTGCTTAAAGGAGGGGAGCTGCTGGATAAAATCCTCAGACAGAAGTTCTTCTCTGAGAGGGAGGCTAGCGCTGTGCTCTACACCATCACCAAGACCGTGGAGTACCTCCATGCGCAAGGGGTGGTCCACAGAGACCTTAAGCCGAGTAACATTCTCTACGTGGATGAATCCGGAAACCCTGAGTCCATCCGGATCTGTGACTTTGGCTTTGCCAAGCAGCTGAGGGCAGAGAACGGCCTGCTGATGACGCCATGCTACACTGCGAACTTTGTAGCACCAGAGGTGCTGAAGAAGCAGGGTTACGATGCTGCGTGTGATATCTGGAGCCTGGGTGTCCTTCTCTACACAATGCTGACAGGCTTCACTCCATTCGCCAACGGACCCGAGGACACGCCAGAGGAGATTCTGGCTCGGATCGGCAGCGGGAAGTTCTCTCTCACCGGCGGATACTGGAACTCCGTCTCAGCCGAGGCCAAGGATCTGGTATCTAAAATGCTCCATGTAGACCCTCATCAGAGATTAACAGCAGCGCAAGTGCTTCGGCATCCGTGGATCATTCACAAAGACCAGCTACCGAAATACCAGCTCAACAGACAGGACGCTCCTCATCTGGTCAAGGGGGCCATGGCTGCGACGTACTCCGCCTTGAACAGGAACGTTCCCCCCATACTGGAACCTGTGGGGTGCTCCATTCTCGCTCAGCGCCGAGGAGTGAAGAAAGTGACCTCCACTGCTCTCTGAGGCTCCGCCCACCACACCAATCAACCAACCACAGACCTCACGCCTGGCGCTGCACACGGCCCCGCCCGATGCCCACCTGACGCCCACCTGATGCCCAGCTTGCCGCCCATCTGCCCCTCGACTAGAGGACAAGCCTGGACTCTGAGGACCCCTGGTGGACAATCCAAATCTTCCTCATCTGCCCACGAAGCGGATCAATAAAATCTTTGGCTTTTACAATGAGCAAAACATCCGGAACATTctgtggactttttttttttcttttttttttttttttggggaaacaAGAGACTCAGTCATGCATATGAActtgtaatatactgtaatattctTTTTATAAAGCTGGTAGAGAACAATATTATTGTATTGAAGAGACTGCAGGCTGTTGTATTATGAAATGGCATCAGATATCGACAAATATAAGCtatttctcagaaaaaaaacactccaaatCATAATCTTGTTATGGAGCTAATAGATTTtcaaacctgatttttttttttttagaggaacAAAAATCATacataatgttaaattatttacttacCATTCCATATATGTAGATATAAACATcaatatgtacaaaaaaaaatcagagtatTTTTACACTTATACATCAAGCATTAGGGAAAAGCTTAACTCTGATTGGTTAAGCACGAGTCTTACGGAGTGTATAAGCTGACAAGAAggatttgaatatgaattttagATAATATATTGATAATGATTATACAGTACACttcatgttaaattaaatagtTTTTTCATCCAGAAGTGTTGTTTGGAATTTGCCAAAGCATATAATTCAAATTACAGGTTATGGttttgggatttaaaaaaaaaaaaagaactctaaatacaaatgtcaaaaattcaaatcttaaaaatgcagattttatgtaaattttatgtaaattaggccaAAGGAGGTGCATCTGGTATTCCTAGAGGAAAGCAGATGTTTCAGAggtcaaacaaataaaaaggtttattttctcttcagattttctacagtgatgttaaacactcGATGCCCAGTGTAACTATTTAGGTAACATTCTAGCTAGTTAGGCTTTAGCTAGTCTTTTAGTCTTTCAGACGTTAGCTATTTCAATCAGAACGTGAGAACGTTAGATGCATGTACATCATTACAGGTTGTATCTTTCTGACCGTTACGATTTCGCAGTCATGGATGTGAGCATGAAAGACGACTGTGATCACTGAAATGCTCTGAAAGCAGCTACTTTTCCCTGGGAATCCTGGATGATTCatgttttacataaaatttacataaaatctatAGTTTTaagatttgtatttaaatctctAAACCGTAACCTGTAatttcaaattatatttcaaacattggtgaaaatgtacatttattaaatacaccacaggggaaaaaagtatttaatgtgacgtgtgtgtatgtaattcacatctatatattcatattcaaagcCTTTATATCAGCTTCAGTATAAGCCTCATGTAGTCTCAAACCAATCACAGgacttcctttttcttttttcctttaaatttatGCATCTTAATGAAAATCCCTAAGTCATGTGAGGGTGTGAAAATGTTGACAGATCCATGAGAGAAGAAACAGAAGCAGAAACTCATCTTCCGCTTTACAGACGGCATTAAAgggcgcacaaacacacaacagcacgtgactgtaaatatttagaaaactCAGGTTTACGAAACGCATAAAGGCATTGcataaaaatattcagacatGCTCACGTTTTTCACGTGTGTTTGTGAAAAGAATTCAGTCGAGGCGAAAGTGGATTTCGAAGCATTactcaatatattttttataaatgcacCAAATAgatgctttaaattattttagtgGGTGGAAAGCTAGCAGTTGTGcttggtgtgggtgtgtgtgtgtgtgctcaccatATTTTGAGTGAAGTTGCATTTTGCTCTCATTGTAGTCTTTCttaaattgaaaagaaaatgctggAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395616 lncRNA downstream 680 18028575 ~ 18028834 (-) True G334038
TU395528 lncRNA downstream 104725 17924491 ~ 17924789 (-) True G333971
TU395486 lncRNA downstream 122708 17905908 ~ 17906806 (-) True G333939
TU395481 lncRNA downstream 126659 17902633 ~ 17902855 (-) True G333934
TU395479 lncRNA downstream 127131 17899839 ~ 17902383 (-) True G333932
TU395628 lncRNA upstream 22538 18079153 ~ 18079979 (-) True G334050
TU395620 lncRNA upstream 37888 18094503 ~ 18099286 (-) True G334042
XR_003404169.2 lncRNA upstream 51082 18107697 ~ 18109070 (-) True LOC113541306
TU395659 lncRNA upstream 84813 18141428 ~ 18202900 (-) True G334079
TU395660 lncRNA upstream 146456 18203071 ~ 18204225 (-) True G334080
XM_026937803.2 mRNA downstream 2566 18021664 ~ 18026948 (-) True eif1axb
XM_026938207.2 mRNA downstream 10491 17997667 ~ 18019023 (-) False map7d2b
XM_026938208.2 mRNA downstream 10492 17997667 ~ 18019022 (-) False map7d2b
XM_026938209.2 mRNA downstream 17104 17997667 ~ 18012410 (-) True map7d2b
XM_026937815.2 mRNA downstream 34368 17984044 ~ 17995146 (-) True zgc:112982
XM_034297809.1 mRNA upstream 23648 18080263 ~ 18086234 (-) True pdha1b
XM_026937838.2 mRNA upstream 252558 18309173 ~ 18315257 (-) True armc1
XM_026938218.2 mRNA upstream 269480 18326095 ~ 18363579 (-) False pde7a
XM_026938217.2 mRNA upstream 269480 18326095 ~ 18363579 (-) False pde7a
XM_034298174.1 mRNA upstream 269480 18326095 ~ 18363579 (-) False pde7a
TU395529 other downstream 102679 17925075 ~ 17926835 (-) False zmp:0000000991
XR_004576970.1 other downstream 112958 17909938 ~ 17916556 (-) False c22h11orf65
TU395488 other downstream 120702 17907894 ~ 17908812 (-) False LOC113541127
XR_004576994.1 other downstream 790408 17185524 ~ 17239106 (-) False vipr1b
XR_003404146.2 other downstream 889829 17116098 ~ 17139685 (-) False zbtb47b
trnay-gua_3 other upstream 322421 18379036 ~ 18379121 (-) True trnay-gua_3
trnay-gua_4 other upstream 323034 18379649 ~ 18379734 (-) True trnay-gua_4
TU395863 other upstream 385740 18442355 ~ 18442995 (-) False mybl1
TU395862 other upstream 388043 18444658 ~ 18520205 (-) False mybl1
TU396861 other upstream 1519493 19576108 ~ 19578920 (-) False nup58

Expression Profile