Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026937840.2 |
| length | 1376 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 8 |
| gene id | cops5 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 18496163 ~ 18502082 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006508 | proteolysis | biological_process |
| GO:0048471 | perinuclear region of cytoplasm | cellular_component |
| GO:0008180 | COP9 signalosome | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0008237 | metallopeptidase activity | molecular_function |
| id | description |
|---|---|
| K09613 | COPS5, CSN5; COP9 signalosome complex subunit 5 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_003404163.2 | lncRNA | downstream | 17370 | 18474666 ~ 18478793 (-) | True | LOC113541286 |
| XR_003404164.2 | lncRNA | downstream | 17380 | 18474666 ~ 18478783 (-) | False | LOC113541286 |
| TU395888 | lncRNA | downstream | 17405 | 18474680 ~ 18478758 (-) | False | LOC113541286 |
| TU395889 | lncRNA | downstream | 17405 | 18474680 ~ 18478758 (-) | False | LOC113541286 |
| TU395890 | lncRNA | downstream | 17405 | 18474680 ~ 18478758 (-) | False | LOC113541286 |
| TU396070 | lncRNA | upstream | 80416 | 18582473 ~ 18583025 (-) | True | G334425 |
| TU396071 | lncRNA | upstream | 81545 | 18583602 ~ 18584312 (-) | True | G334426 |
| TU396072 | lncRNA | upstream | 82706 | 18584763 ~ 18585235 (-) | True | G334427 |
| TU396115 | lncRNA | upstream | 247338 | 18749395 ~ 18749913 (-) | True | G334470 |
| TU396116 | lncRNA | upstream | 253813 | 18755870 ~ 18759552 (-) | True | G334471 |
| XM_034298212.1 | mRNA | downstream | 5582 | 18483387 ~ 18490581 (-) | False | ppp1r42 |
| XM_026938172.2 | mRNA | downstream | 5582 | 18483387 ~ 18490581 (-) | True | ppp1r42 |
| XM_026938173.2 | mRNA | downstream | 13763 | 18479679 ~ 18482400 (-) | True | LOC113541285 |
| XM_034298307.1 | mRNA | downstream | 46936 | 18437514 ~ 18449227 (-) | False | mybl1 |
| XM_026938168.2 | mRNA | upstream | 306537 | 18808594 ~ 18816074 (-) | True | pex2 |
| XM_026938262.2 | mRNA | upstream | 503441 | 19005498 ~ 19008927 (-) | False | pkia |
| XM_026938261.2 | mRNA | upstream | 503441 | 19005498 ~ 19008927 (-) | False | pkia |
| XM_026938260.2 | mRNA | upstream | 503442 | 19005499 ~ 19015855 (-) | False | pkia |
| XM_034297799.1 | mRNA | upstream | 503442 | 19005499 ~ 19008689 (-) | True | pkia |
| TU395863 | other | downstream | 53168 | 18442355 ~ 18442995 (-) | False | mybl1 |
| trnay-gua_4 | other | downstream | 116429 | 18379649 ~ 18379734 (-) | True | trnay-gua_4 |
| trnay-gua_3 | other | downstream | 117042 | 18379036 ~ 18379121 (-) | True | trnay-gua_3 |
| TU395529 | other | downstream | 569328 | 17925075 ~ 17926835 (-) | False | zmp:0000000991 |
| XR_004576970.1 | other | downstream | 579607 | 17909938 ~ 17916556 (-) | False | c22h11orf65 |
| TU396861 | other | upstream | 1074051 | 19576108 ~ 19578920 (-) | False | nup58 |
| TU396884 | other | upstream | 1098670 | 19600727 ~ 19603693 (-) | True | G335165 |
| TU397303 | other | upstream | 1677355 | 20179412 ~ 20182412 (-) | True | G335523 |
| TU397559 | other | upstream | 1740463 | 20242520 ~ 20246278 (-) | False | cops9 |
| TU397560 | other | upstream | 1744509 | 20246566 ~ 20248461 (-) | False | otos |
