RNA id: XM_026937851.2


Basic Information

Item Value
RNA id XM_026937851.2
length 7153
RNA type mRNA
GC content 0.42
exon number 18
gene id map3k22
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 16892984 ~ 16952065 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTATCTTTAACTTTTGCActtccttcatctctctcttccacTATCTTTCTCAGTCTCCTGCTATCTTcatccccctctctctgtcttcatctcttctttctctttctatcttcctctctctctttctatgtatgttcctctctctatcttcaCTGTTTATCATCATCCCTTTTTGTCTGGCTGtatctctctcttgctctctctctccctcccctctctctctctctctctctctctctctctcatttcaaCTCTCTCAGTTCAGATTCACCCTTTTCTTGCCATGCCTTTCTCTCCACCTATAGTCCACGTCTTCTTTCCCTGCCTCTGTCttcttctatctatctagctatctgtCTATCTTATACTCCTTTTCTCATGACTCTTTCTGTcgttccatctctctctctctctctctctctctctctctctctctctctctctctctctctcagtcttgcAGGTTTAAACTGGTCTTTAGTCAGAGCCGTGTATTTTTCATGAGACTCGGGTGTCACTTCGGTGAACGTAGCTGAGAAAACGACTGGAATGAATGAAGGCTGAAGCGTCTGTGTTTGCCTGCTGAAGGAGTCGAGCGCTGCAGCTCGAGTTCAACAAGGCCACTTCCTGATGATGACAGTAAACATGGATGACGGTCTTCACAATGGGCCCGGACAGCACAGGAACATGCAAGatgaCGAGGAGGCTCTTAACTCTATCATGAAGGACCTGGCAGCCCTGCGCTGCTGTTACCAGCTCAACAGCAGCACCAGCCACAAACCCAAAAGCAGGACCCCGAGCTACAGACAGgatTTGCGCGTGAAGCTGGAGCATGAGCGAGAGAAACGGATCATTCCTTTCCAGAGGCCGCTGAAGTTCAGAGAGCTTCTGCAGAAAGTGACGGAGGCCTTTGGTCAGCACATGGATCTTTACTACACTGACAGAGAGacgCTCGTAGCTCTAAAGTGTCAGGAGGATTTGGACCGAGCTGTGTCGAGTTTGAACTTCAGTTCAGGAGCAAAGGGTGTGCTGAGAATTGTGCTGAAAACTCCTACTAACAACCACttccTGCAGGTGAACAGCAGAGATAAGCAGAGTGAGATGAGGTCGTCTCGGTCTCTGGGAGACCTGAAAGGTTCTTTACTCAAAGGATCCGAGCGAGTGCGCAAACACTCCACAGgCTCTCTGCACACAGGGAGGAGTTCCCCACCGCCGGGCAGCGTGCCCGAGGAGCAGCAGCAGATTGCTCGCCAGGGCTCCTACACCAGCATCCACAGCGAGGGAGAGTTCATCCCCGAGACGCCAGATCCCAACGTCATGGACCCTTTCGGAAGTGCCGATGGTTCCCTCTCCAGCAGCTGCCAGTCCCTGGACCAAGCTCTAGACAGTCCTCCGTTCTCCCAGAATAACCGTGACAACAATTACCTGAACCTCAACTACGACTATAAAGGCCGACACGGGAAGCACGGGACTTTCCCACGGCAGTTCCACTTAACCAATCGCAGCAAGGACTACTGCGACGGTCGTAGCACATTCCCACGCAGCTTCATGCCGCAGGAGAACCTGTTCCAGCTGGTGCCGTCGAGCCGCACACGCAGCTACAATGGAGACAGCACGCTGCCGTACAGCGGAGACCTCCACTCGCTCGGCTGGAGTGAAAAAAGCAGCCAGCGCAGTACTGCTAAATctccgCGGGCGCCAGTGAACTGGCGTCAAGGGAAGCTGCTGGGCCGTGGAGCTTTCGGCGAGGTTTACCTCTGCTATGATGCCGACACGGGCCGAGAGCTGGCGGTTAAACAGGTGCCCTTTGACCCTGATTGTCAGGAGACCAGCAAGGAAGTGAACGCACTTGAATGCGAGATCCAGCTCCTGAAGAATCTCCGTCATGAGCGAATCGTCCAGTACTACGGTTGCCTACGTGACCCCGACCAGAGGAAGCTGTCCATCTTTGTGGAGTTCATGCCTGGGggcTCAATAAAAGACCAGCTAAAGGCGTACGGTGCTCTGACAGAGAAGGTGACGCGCAGATACACCAGACAGATCCTGCAGGGAGTCTTCTACCTCCACAGCAACATGATCGTCCACAGAGATATCAAAGGTGCTAACATTCTGAGGGACTCCTCCGGAAACGTGAAGCTGGGAGACTTCGGTGCCAGCAAACGCATTCAGACCATCTGCATGTCAGGCACAGGCATTAAATCAGTCACTGGCACCCCCTACTGGATGAGTCCAGAGGTGATCAACGGAGAGGGCTACGGCCGCAAAGCTGACGTCTGgaGCGTAGCTTGCACGGTGGTGGAGATGCTCACCCAGAAGCCGCCATGGGCCGAATATGAAGCGATGGCGGCCATTTTTAAAATCGCCACTCAGCCCACGAAGCCCAACCTGCCCGAGGGTGTATCGGACGCGTGCCGGGATTTCCTACGCCAGGTCTTCGTGGAGGAGAAATGGCGTCCCACCGCAGAGGTGCTGCTCAGCCACCCGTTCGTCCAGGGCGGCTTCTGATTCGCTCCGGACCCTGAAATTCCCGGAGACGCCCCCTGTGCCAGTCCACTCCTGCCCACTAATGATCACCACTCTGCCTTCATCCAGGGGAAACTGGCGCCTGTTCCAGCCCACTCAGAACAAAGCAGACTCCTCAGCAAGGGCTGTGTATCTCAGACactcccaccacacacacacacacacacacacacacacacacacacacacagacacacacctgttaaGCAGCGTTATACATCTGGGTTGAGGCTGTAGAGTCCTGTGGTCTACAGATTTATctgcattaaacacacacacacacacacacacacacacacacacacacacacatacacacacacacacagacacacatacacacagagcaggcaTGGCACAAAGAAGCTGTTGTTTACAATGACATTCAAACACATAAATAGTGACATGTCTAATTGGCTTTGCACAAATAATAAAGTACACAAGAGGAAGGTTTAGAGCTTGGATTAGATTTTTTAGATTCTTTTTAGCCAAGCTCATTCGGTTTTATCCGCCATGTAGGAATGAGGTTTATCAGGACCACTGGTCTCTTATTGATTCATTAGTGATAGTGGctagaaggttgtgagttcaaatcccagaactgcCAGAGAGCGATGACTGGGCCCTCAAACAAGACTCTTAACCCTCAGcctgctcagctctgtgcttggattggattAATCACTGAGAAAGTTAAAGGAATACCTTAgcgtttatttttaacataatcTCTATCCATCTGTAGCGTATATGTGAttacaacaaacatttttactgACTCTGCGTTGATGCGTCTGGAAAGATTACACTGTATTTTAacttctataaaatgaccagtagAAATAACACCAGGTCATATATTCTGTCTGAATTGATATGTTTGCCATTATATCATGTGGGAAAAGAAGTTTCCACAAAACGCTCACTGTTTTCTATCATCTAAAAGCAAAACGTAACCAAGTCcgagtttaaaatgcagaacaataaaatatagatgacGTTTAAAAGGACTTGCCAAACAAGCCACACTACTGGGGGGTTTTAGGTATGTACCAGGTACAGCCTACATACATGTgagggtcatgtgacctactagtGGTCACATGCATTACttgtggccacgccccctacaacaAGCACTTCTAATGATAATCAGAGCgatcagtttgtattaaaatgatgtgTATGTAGCACACATGGATTTTTTAATGTGACAATCATGCGTACATCTCTGATTTATCCCGTGCGTATCAGTCCTAACTTCTACAGACGTCATCCGACTTAATACATACGTTTACAGAAAACGAATCCGATCTGAATCGGcacatttccctgtactgagaaaagaaaacctgtttactccaaactcGTATTAATGGAAGCCTAAGCAAGGTTGttgatataatatatattatattaacaaatatatatttaaaatatgaactatacagtcagctccataATTACTGGCACCCCTTGGTAAAGCTGGATAAAAAAGCTTATGAAAAAATTAAACGTCTTTGTGGTTAATGAACTCATCTCACACCCcaaatatgagagaaatctaacctttaCCTGAAgtattctaagaaaataaaaacccttatcaaaatgtattttagctCATTTTAATTATTGGCAGCCCTAGAAATTCTGAACATTGTGAAACATAATGTAATTGAAGTATGTtctcatttatatttatcatgTATTCATAACCGAAAATTATTCTGTCTGTAAAAGTAATCACATCACATTTGTCATGAGgacaaattatatacatttagaGCATAAATTAGTAATACCTTTGGCTGAAATCTTTCACATGATACTCTACTAAATTTAACAACTGTGTTTAAACtttcattataagtgagttttgagtaaacagttggttttttttctcagtacaaaGTAACCTGTTGTTTgaggtaatcacacacactacagtggaAATACATAGAGATTACTTTGAAAAATAATGGAGTACTCCTTTAAATGTATGGTGCAAGTATTCTAGATTAGGATGTCGAGTTTGCAGAAATCAAACATTGTGAATAAGAGTTCATTTTAAGACTCTCAGCCATGAAATGTGGCTCGGTAGAAATGCAGCAGAATAAATGTTTACTGCCTTTAATAGATCCAAATTAACTCCCTCCCCCCTCACACCCTCGGGTGAAATTTGTTCATAATGAATTTAGTGCCGTTGACTGGAGTCCACACCAACGGCCTGGAGCAAATCGATACTGTAAGATACTCTTTGAGTAATTTCTCTTAAGCTCACTGTGTGATGGTTAGAATCTAACCAAGGGGAAAAATGGCACAGAGCCGCACTTGTACGACCACCACATAGGTAAATCCAGAGGAACAGATGTGCGTTTCTTCCATGCAAGTCTGCACTGTGCTCTCAGCTAACAATCATcatggattattatttttttattttttattttttacatgataTGAGGTTAATAGCTCATTCTGTTATTCGACGTTTGGAAGCACTCGTATTTTAATCACTGTAGTGGTTGCGCATTTTGACATGTGTATCCATCCAATTTTGACATGCAGGATAATCAGTTGAGATTTGAAGAaacttatttttataaatatatatcagcGTTTTTTTATCCtggtttttgtattattttaaaagaatgcTTACTGCGTCTAAGCAATAGTACTGAGGAATACTATAGTGTGACTGAATGATCAACATTCCTCATAGGTTCAGTCATTTATTCAGACCTGAGTGTATTCTTATCGTCAGAAACAACCAAAGAGCACATTTGCATAGAGTATGCAGCTATGTCTGGAGGTTAGGTctgtttttacaatttttacaattattacaattatggGTGTGACTGTATATTGGTATGAAggtataataaaatttaaaagtttcacttttaacaaaaaataaataaatctgtaatagtCACAGTCATTTCCATGTGCAATGCTGTAGGATGTCATCTGCAAAACCCATGTCATTGTCATTATACATGAAGACTGTCCAAGTCCATTGAAAAATACTTGCTTTAAACTTGATTTCAAAATGCATTGcaaagtgcttggacccctaaatcaCTGCTTGCAGCTATTTTTATCCTAGCACCATTGTGGCAGTGTTACGACATAATGTCATAATTAGTGACTGTATGTATCAAAAACCATTATAATGGTTTGTGCAATGAGCATATCATAATTATTCATACCCTTTCACCCATAATTGTATTATACCATAGGAAATGTGGTATTATTAGGAAATTTTGAggtaattttgtttaaaaaaaaaaagaaaagaaaagaaaagaaaaagaggcttGACATCCTTCAGTGAAGATTCCGTCATCAGTGTTGTGTGGGAATCAGAAACATTTGTTGCTGCAGTACTTTTTTTCTATACAGAAATACAAATGTCCTCCAGTTTGTTGATCACCCTGACCTGTGCCTTCTCCATAGGAGCTAttcctgtttattattattttttttttatgaaaatgacCACAGTCGTTTTTAATGGTGCGTTCACTTGTCCTTGTTAAAGACCGTGAgtgatgctgtatttttgatATACAGACTTGCTAAGGTGATAAAGATTGTATTGTAAGTACAGAGCTTATAGGAAGCTAGACACcttttaaaatcataaaagcCTGAGACTGATGTTTAAACATATTCCATTGATATACAGCAAAATGCAGTGCAAAGGTCTTTAAGTTTAAACTTATCAGGGGAATTAATTctaaaaattaaagaagcagTTTGTAAATTTTAGAAGTGCTGCCTGTGAGGTAAATTGTAATTGCAGTGAAAacattggcaagacttcgcctCATCCCCTAACCAACCCCCACCCCTGTGCTGAAACTATATATACCTGttggcttttctttttctatatgAACTTCCTAGGTAATAGTGGTGGATCTGAGATGATCTTTTTTTGGGGTGAGGGTAAGGCCAGAAATGTccaggccagaaaaatgtaaacttaAAATGAAACTAGCCAAATCCATTGCAtagcaatatcacacattttGTCTAAGGTATCTTTGAAATTGATTGTGATTATTACAGATGTAGatgcacttttaaaaatgacaaacttgacctttaaaaaatattcatcgTATAAGTAATTAATGATGTTACCAAGACAGGTATGAAACGCCTGATACACCTGATACAACATCACCAGTGCACACGTCTGTGCCTTTCACACATTAGGAGGAAACTAGAAGGAagaaaatatgtatgtatttgagGTTTGTTTTCAAAAACAGTGTTAATGTTCTGTCACTTAACCATTTGACCAAGTGCCAGAGCAGAAAATCTGAACCGAACCGGCGAAAAGGGTGTCTATGTTTTCTGTAAGCACTGTACAGATTGTACTGCACTTTTTACaagatgttttattatattccaGATACTTTAGTCATGATATTACCGAAACTTGTAGAGCTGGATTTTTTCTgagtaaatgataaaatgaccTCCAAGGTTTTTGAAGGAGGCTAGGAATGAAAAATTCTTTATTGCCTTTATGATAAAACCAGAACACATTTATTCTGAAAGTGATTTTGTACATtggaataaataaaggaaaggtTTCAAAAATCAA

Function

GO: NA

KEGG:

id description
K20606 ANP1; mitogen-activated protein kinase kinase kinase ANP1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394875 lncRNA downstream 1157 16891437 ~ 16891827 (-) True G333429
TU394874 lncRNA downstream 1620 16891128 ~ 16891364 (-) True G333428
TU394873 lncRNA downstream 1993 16890184 ~ 16890991 (-) True G333427
TU394846 lncRNA downstream 6662 16885207 ~ 16886322 (-) False myd88
TU394880 lncRNA upstream 15409 16953725 ~ 16955463 (-) True G333434
TU394860 lncRNA upstream 69511 17007827 ~ 17008733 (-) True G333417
TU394901 lncRNA upstream 92149 17030465 ~ 17030697 (-) True G333452
TU394903 lncRNA upstream 98851 17037167 ~ 17037512 (-) True G333454
TU394919 lncRNA upstream 147567 17085883 ~ 17086204 (-) True G333470
XM_026938292.2 mRNA downstream 3560 16885151 ~ 16889424 (-) True myd88
XM_034298107.1 mRNA downstream 13100 16829790 ~ 16879884 (-) True oxsr1b
XM_026937858.2 mRNA downstream 63599 16820229 ~ 16829385 (-) True slc22a13b
XM_026937809.2 mRNA downstream 91013 16795010 ~ 16801971 (-) False LOC113541039
XM_034297854.1 mRNA upstream 22537 16960853 ~ 16989036 (-) False dlec1
XM_026938112.2 mRNA upstream 22537 16960853 ~ 16981076 (-) True dlec1
XM_026938113.2 mRNA upstream 22537 16960853 ~ 16981075 (-) False dlec1
XM_026938293.2 mRNA upstream 77308 17015624 ~ 17028893 (-) True vill
XM_026938294.2 mRNA upstream 77308 17015624 ~ 17028858 (-) False vill
XR_004576965.1 other downstream 13100 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other downstream 13101 16830696 ~ 16879883 (-) False oxsr1b
TU393587 other downstream 1827174 14965813 ~ 15065810 (-) False LOC113541115
XR_003404167.2 other downstream 1955580 14936886 ~ 14937404 (-) False LOC113541102
TU392350 other downstream 4215051 12676581 ~ 12677933 (-) False LOC113541288
XR_003404146.2 other upstream 177782 17116098 ~ 17139685 (-) False zbtb47b
XR_004576994.1 other upstream 247208 17185524 ~ 17239106 (-) False vipr1b
TU395488 other upstream 969578 17907894 ~ 17908812 (-) False LOC113541127
XR_004576970.1 other upstream 971622 17909938 ~ 17916556 (-) False c22h11orf65
TU395529 other upstream 986759 17925075 ~ 17926835 (-) False zmp:0000000991

Expression Profile