RNA id: XM_026937852.2


Basic Information

Item Value
RNA id XM_026937852.2
length 1507
RNA type mRNA
GC content 0.38
exon number 7
gene id flj11011l
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15121226 ~ 15129603 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggaaaccattagactttctgtgatgGGGCTTCCAGCATGGCGTCCATGCAGAAAAGGCTTCAGAAAGAACTGTTGGCTTTGCAGAACGATCCTCCTCCTGGAATGACTCTGAACGAGAAAAGTGTAGAGAATACTATAACACAGTGGGTTATTGATATGGAGGGAGCCTCTGGCACTCTGTATGAAGGAGAAAAATTCCAGCTGCTTTTCAAATTCAGTAGTCGATATCCGTTTGACTCGCCTCAGgtaaTGTTTACAGGAGAGAACATTCCTGTCCATCCTCATATTTATAGCAACGGCCACATCTGCCTGTCAATTCTAACAGAGGACTGGTCACCAGCACTGTCTGTCCAGTCAGTGTGTCTCAGCATCATCAGCATGCTGTCCAGCTGCAAGgagaagAGACGGCCTCCTGATAACTCCTTTTATGTAAGGACATGTAACAAAAACCCAAAGAAGACTAAGTGGTGGTATCATGatgaTACATGTTGATGCTGAACTTGACAACACGTTTAGAAAGAAGTTCCTGCTGACGTACATTAGCACTTTTTAAACTTTGAACTTTAGCCTCGAACTGAAAATGGAGGACGTGAACTTTTACTCAAGGACCAGCATTACGATAACAACGAAATGGCTTCAATTAAAGCAAAGACGTCAAGAATTAAAGGCGGAATCTCCCAATCAGGATTGACTCCAGAAGGACGCCGGATTAAGCAATGAGTCCTTAATTCCGTTTtttgatttttggtttcttagCTATGTCTCAAATCGCATGCTTCTGTAGCGCACCAGCCCCTTTTAGTGTGAGCATTGTGTACAAAAGGACCCTTGATGACCCTGTTCAGGGTATAGAGTTGAGCTATCTAGGTTATACAGGCCATGTTTAGTCTCTTGGTTTAGATAAGAATGTAAATTCAAATTGCTAGTCAGATTATCAGTTCAGCAGAATTAAAAATTGAGGTATGGAAGGCTAAACAGAACCAGTTTTAACCAAATATTTTCAAAAGAGGTAAGAACATGCTTTTTGCTAGTGTCAGGCTTTAGTGTATTCTGTATCCATGCTAGAAATTATTTTTGATATCATTTTGAAAAACAACAAAGGTTTGGTCGTTGAATTGAGAAGTTAGTACATCCAGTTAATAGTAAAGTGCAtagtatgcaatttgagacaaAGCCCTTGTCTTTTTctactttatttaatatattattaaatgtaacgttcttttctatttttgttgtGCAATAATGAACCTAAATCGTTTGGTTCATCTGGAAACGACTTTAGCATTTAgtgctttgtgtttgtgcatctgTTTTTGTTCGATGTTTATATGCACTGTGAAATTCTCTATGAAGGCACAGAAAAGTTTAAATCGAAACCTCACTCactaatttatttctatttaattaactaggcatgtgccgataattgtttatattacatacggcgatatttaaaatgcatgataTTATTGTGAATACTTCAATAAATCATCAGTAGAagtaa

Function

GO:

id name namespace
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006513 protein monoubiquitination biological_process
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins biological_process
GO:0071218 cellular response to misfolded protein biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393531 lncRNA upstream 8963 15065975 ~ 15113514 (+) True G332334
TU393529 lncRNA upstream 9954 15111663 ~ 15112523 (+) False G332334
TU393440 lncRNA upstream 166410 14955860 ~ 14956067 (+) True G332248
TU393426 lncRNA upstream 177265 14944991 ~ 14945212 (+) True G332238
TU393268 lncRNA upstream 419207 14688163 ~ 14703270 (+) True G332111
TU393555 lncRNA downstream 72214 15201817 ~ 15202305 (+) True G332348
TU393552 lncRNA downstream 93917 15223520 ~ 15314968 (+) False stau2
TU393773 lncRNA downstream 199011 15328614 ~ 15332432 (+) True G332527
XR_003404151.2 lncRNA downstream 284269 15413872 ~ 15418923 (+) True LOC113541145
XR_004576951.1 lncRNA downstream 441260 15570863 ~ 15579798 (+) True LOC113541248
XM_026938122.2 mRNA upstream 12163 15084521 ~ 15110314 (+) True trpa1b
XM_026938196.2 mRNA upstream 274393 14803020 ~ 14848084 (+) False eya1
XM_026938198.2 mRNA upstream 274394 14796644 ~ 14848083 (+) False eya1
XM_034298109.1 mRNA downstream 4750 15134353 ~ 15224591 (+) False stau2
XM_026938099.2 mRNA downstream 5421 15135024 ~ 15224591 (+) False stau2
XM_034298108.1 mRNA downstream 8128 15137731 ~ 15224591 (+) True stau2
XM_034298261.1 mRNA downstream 122033 15251636 ~ 15265895 (+) True si:ch73-173p19.2
XM_026937952.2 mRNA downstream 253383 15382986 ~ 15397527 (+) True si:ch73-173p19.1
trnat-agu_17 other upstream 1737203 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 1864061 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 2409799 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 2965690 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 3373918 11738158 ~ 11748559 (+) True ankha
XR_004576981.1 other downstream 122032 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 436572 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 1977869 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 1977869 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 2155479 17285082 ~ 17300011 (+) True G333388

Expression Profile