RNA id: XM_034298105.1


Basic Information

Item Value
RNA id XM_034298105.1
length 7484
RNA type mRNA
GC content 0.41
exon number 9
gene id LOC113541068
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 16805646 ~ 16818439 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCTGgagaattcttgaatctgattggtaagaaggtgttgattcattttctagaaatCACATCCAAAAGTCGTTACATCTGCAAGGTTTGTATTAATATGCTCCgttttgtttctatagtgacaactTACACAGTGATTTGTATGGCAggcgctccacataaacggatcaaaaaatgtgtgtaattgttgatatgctgaagttttcaatgaggaaatgttttttaGCAATTATTataggagtctccagtgtcagcgctttgtaacagtcagctataaagctgtaacttgaactTCTCCTTGAAAGTCTCCAGTATGTAGGACttctctgaatttttttcttctctgagtgtcttattgagaaaaaaaaaaaaagaaaggctgctGAGGGTATGACTACAAATGACcaacagataaaaagtaagacaagtcattttttaataaataaaaaaatgtaacctaATGTAAaaggaaaattgctgtggtgtagtggaataaaacactttggggcgcTGGAGTATGCTGGAATAGTCCTTTAATGGagtgtaaacacactgaagtattgagtatttaaacaaaaatgaacaataattaCTCACATTCGAGTTTACCCTTCAGTATGTtaagtatatgtgtatatataaaacataaaggCAGCAAATCTACAGAAACCAACCATCCAGTAATTACAGGTATTTAAATGGATAAGACACGGCAACTTCAAAATCATGCTCATGTCACAACAAAATGAATAATCACATAAGATTGATAGTGGTATACTAATATAGcacagaacagtttttttttttttttcagtaaaacgTGTCCGTCAGTTCACTTTGCATCTGTTCAGTGTTCCTGTTCctataaataacacacagctGAGACACAACAACATGCCTCAGAGTCCTTTGGGAGGCTACACGTCATGTGCAGATCTTGAGATCTCTGGCTTTGGGCCCCAGCTGACCGTACTCGGGCCACTGTGTTTCACCCTGCACCCTAATGGGGAACTGAGGAACTTGACCCTAAGAAGACAGATCAGCTGAAACAGGAGCAACCGGATCTGCACTATGCCCTCTTCCAAAACCCTCGTTTGTACTAATGAAGCATGTCACTCTTTCCAAGACACATTACTAGCACAAAGTGAAGTGTTAAAATGATTAACTCAGAAGTGGAAAAGTGAGAttgattcaaatttttttttttaaaaaattatagttTCTGaaacaaatgaccaaattacATGAAAAGTACATAAGCAGATAATTAGCCTTGGTTGACATTTAAAAGACTACAGACCATAGAAGAACTGTAGCAGAATAATGAATGCAGACACATTATATGACATAACTGGTTTATTATGTGCTTTATTGGTATTTAACAGCAGGGACTCAGagaatgaaaacttttttgCAGCAactttccagtgtcagtggtaaTAAACGAGCAGGACTTTGTTCACTAGTTTTTGCATGGTGTGTGCACCTCGTGATGCACCACAAATCTCTGCTGTGCATCGCTCTGAATGGACTTAACGACTCATCCTTAACAAAGgtgtagtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagatggggaCTAACCTGCGGAAGACCCAGTCTCTGAGGTGTGTTGCCACTGAGCACGCTCTGTCCTGGACGGAGGCGGGACTAAAAGACAGGAAGAAGTCCGTCTCAGAGCTTGTGGCACAATATCAGAATGCGGTTACTGGAAAAGCAACAGCAGCGGATTCAGTGGAAAACAAGCAAAAgCAGACCCTCCAGTTTGCTGCAATCCCCATAACAGAGGCTGAGACTAAACTGGAGACTCTGATCCAGAGAAGCACTAAAGAAAGACCAAATGCTTGGGCTGATCGTAGCACCAACACTCATTTCACACGCAGTAAGTCGATGGAGTTTCTTCCTCCCCAAAGAACCATAAGCACAAGCGCTCTCAGGGAACTCTTTGAGCCAAAGGTTGCCATGCAGCCCAAGAGTGTCCACAAACCAAAGAATACTGACAAGCCACAAAGCACCCCAGTCACGGAGAATGCTGGGATCAATCATAAAAGCACTGAGGATCTGCTGGTGTTTATAGAAGAACACACCATTAACAACCACGAGAAAGCAGTTGAACCaccaaaagagaaagaggagaatgTGACTCCAAAGGTGGTGAGAGCTCCCTTGGCGGAAAGAAGAAAAACCACTACAGGAGTTTATACTGAAAGAAACATTCCTCAAACAGACGATAAACGGAAATCAATTGCAGACTTCAGAGACAACTCCACTCTGTATGGACGGGAGAAGTTCCCTATTTCTGTCAAAGCCATCTCCGCACTATATCTGTCTAAAGTGGCAGCTGCAGACCCAACAGGGAACCTTTTAAAACCAaaacaagATTGTACTTCTCCAACCGGACCAAAAGTTTGCAAGATGGCTGATGTGGCACCAAAAGACTTTGAGCAAGCCCCATACTCAGAAGATGATTCAGCACAGCCAGATCTAACCTTTCCCATCCTGCAACCCGATTCCAGGGCTGACAGCCAGTCACCCATTCCAACACCCCCTTCAAAAGAGGTTATCTCTACACTGTATGAACAACGACAGAAATGTGAGTTGAGGCGACTCCTGAAACACACCTGCCCTGAGCTGAAGGGCCTGGGAAACATGATGGACGAGGAGTTTGCTGACATATTAAACTCTGGCATTGCCACAGATATCGCATACCAGGGCGAGGTCCAGTCAAGACGTTGGATATTTGAGAATGGTACTGTCAACACCGGAGAGTCCCACAAGCAAACACATTTGATGGAGAAGAGCATTCAAGGAGAACACACATTTGAACAGCTCTTGAATTGCTTTAAGGAAGAAGGGTCCATACATGGCACCAAACAACCAACCAGTCACCCAGAGACTGATGAGACCCCACAAAAAGTTGGTGAAGCATTTAGCCAAGAGGAGAACTTCAGGGTGAATGTTAAGGCCAAACGGAAAATGTTCGAAGGTCAGTTAATTGAAACTTCAAGAGAGGACCTAGATGATGTCTTTCCAGGGAGGATTGTTATCTCAGAAGATGAAAAGGGAGCAGTACAAAAGCAAAAGAGAGACTTTGAAACTTACCAAACTGGCACCACCAAAAGAAACAGTGACCTTAGCATTATAGATATTACAGACATAGATCAAGATTGTGGTGAAGTGTATCTAGGTATATCTAGAGCCAAAGAGGTTTTTGAAAAGGGGTTTGACAATGAGAACAGCTCACCACCAAATGAGAACATAAGCACAGAGGATGAAACTCTAAAGACAAATGTAAAGAACAGAACCAATATGTTTGAATCAACACCTCTGGACAGAATCAATTGGCAAAATGATGCAGAATCAGATACCATGGATGAGAACATGAACAAATCCTTAATTTCTCTTCATGGCTTCAGTGTCATTCATTCTCATGGTGCCCTTCTTGAAGCCAGTGAGGCTGGGCATGTGAGAAAGGCAAACTATTGCTTTATCCAGGAAAAAGGTCCAGAAATTCAACATGAGGAAGTGGTTATGGGAAGTATGAAGAGTATTCTGCTTCAGCTTTTGGCAAGAGTAAATCTTAACCCAGTTATAGTCTTCTTAAAAGAGGATGATCAAGGAAATGTGGAAATCAAGAACATAGACATACCAACTCACCAACTACCATTCACAGTTAACCAAGACAAAGAATACAGAACCACAAACATGGTTCAGGTCATCGAAGACCTACTTGGTCAAGAAACATGTCTCGGAAAAGGAGTTTTAATACAAGAACAAGCAACGGGATCTGTGGAGACATTAGTTTATGTTCTTTTTAGACATGACAGCCATGATGGAACTGTGATGGTTCGAAATTATGAAAATATGTTTGAGCCAAGAGAAATGAATCTTCTGATAAGTCGAAACTGTGATGTTCCCCCCAAAATGTGCAGCCCACCACCCTTCACTCAGGGTGATGCCTCAATTTCAATCAGACATGATGAAAACAGGATAAGCAATGTGaaattgttccagaactgtattGAGAATGGAGATCTGGGTTACTTAAAAGGTCTGCAGAAAAGTCCAACAGATGAAGACGTAAGTGTCAAGTTTAGGCAAGAGGAGCAAAATGTCGTGATTGCACCAGGTAATCATAAGATGATCAAAGCAATGTTTGTTACAAATCCAGAGCATGATGGGTCATCTTTGCAGTCTGAGAAACATGcccaaaataaattaaaaaacaatatggAAATGACGGCAAATGGAGGATATAGTCTATCAACTGATGGAGAGTTTGAAAAATGTAGTGTTGAAAATGTAGATGAACCTGGCAGAATGTTCAGTCAAGATAGAAAAGAGATGTGCAGtgaaaaaacagatgaaaatatTGTAACTCTGCCAGAGGTAATTGACATGGTGGAAAATGAAGCGTTGTCAAATCTTCAAGCAGCTATCATGAGTCTCCAACAGGCCACATTGGAGGCAAAAGCTATTCAACAAAGTGTTTATGAGAAACAACACGATACCTGTCCAACATCTTCAGAAAACCAATACCTCATAGGAGCCATGAATGAAGAGAACAAAGAGTTCTCACAGAATTTTGAAGCTGAACAGCAACAAGAAGGAAGAGAACAGACCCTGAAAGGCAGTGTCCAAGCAGCTCTGGATTCTCTGAAAAAATCTAGCTTTAATGTCACCAAAGGGGATTTTAAAGCTGCAATGATTTACAGGAACTCAGGAAAAACTCATGCTGGgcaaaaagcTGATATAATTGTCCCCTCAGAAGGGATCAAAGCATGCCCACCCTCCCATCTGCCTGGACAGGTGACTGTCGAGACACAGCATGAGGGTGCTGAAACTAGCCCATTTCAAGGCCAGCTCACAAATAAACCGTCAGCATGCTCCCCactgacaaaacaaacacacgaACAGGCTTCTCTTCAGAGAAGTAAAAAGGCTCCTGGACTTAAGCCTGCCATTCCCCCCAAACCAGACCATTTAAAGACAACCCCTAGCTCCACCACAATGGCCAATAAGTCTGCAACCAATGCAGGACATCTAAATAATACCAAAGCTGAATCAAACTCTGCAGAACAACAAAGTGCAGAACTCACAAATCTGAAACCAACACAAGATGACTTCTTGAAAGTGCCACAGAATAATGGAGATACTGAAATACCTTGTGGTTTGACAGTCACCGATATCCAGTCGAGCCAGGATTGTATAACCATGAGCAGTCCTGAGGGAAATGCAGCCACAGAGGAGAAGAGGGACCTGATGCTTGAAGTAAGTGGGGGCAGTTCAGGGTTTCAGGCTTCCCTGCAGAACTTTGGGATAAAAACAGGCCAAGCAATGCCACCTGTGAAGCCCAAAAGAATCAAAATGACCACAGATAGGACTGTTGTAAATCCTGCTCTTTTGGGACCTAACTGCAAACCAAGCAATGGTGAACATAAGGAACAACCAGAGAGCAATGTGACAATGAGGGAAAAGAAAGGTAGAAGAGAGAGTGAAGCAGAACGAAGACAGAGGCTATCAGTGCACATGGATGAAATCATGAAGGGAAATGCAAATGCAGCCATGGAAATCTTCGACAGGCTGAGAGAGCAAGAAGAGCTGAAAACTATCCTCTATAAAGTTGAGGAAATTGAAGGAGAGGCCAGTCAGGATGATGGTGACCTCAGAAAGATTTTTGAAAGTGTACCAGATTGGGTTGTGCCACAAAAGCATGAAAATCCCAAAAATGGGGTGATGGAAAAGGAAGCAGGGAAATCTGAAACAGTCTGTGAATCTGAAATGTTATCCTCCATGCAGGTAGCATTTGGAGACCTTGAAAAAGCAAGTGCTGCAATAATTACTTTAAAAGAACAAACATTGTCAAGACTCATGGAAATAGAGGAAACCATTAAGAAAGCACTTTACTCCGTCTCTACGCTGAAATCTGACTCAGACATTGTAGGGCTGTCTGGTCTCTTCAAGGAGTCCATGATGGCTGGGCAATATTTGCCCATTTCAGGTAACATACGTAAAATTAGCATTGGGTCAAGCAAATCTCCAAATCCTCAGAGTCCGAATAATGTAGGAGTCTCTCAGAAGAGTGCTACAGAAGAACCAGGAATGCGGAAAGTAGAGAACTCGAAGTCAGAGCTCAGTCCTCCAGAAACTAAGCCAAGAGCAGGATCTCCTTCCTCACCTTCTTTTATTTCTATCCAATCCACTGCCAGAAGGAATACAGAAACACCAGCATCTCCAAAATCTCAATCCTCTATAACAGCTCTGACTTGCTACAACATTCCTGCTGAAAAGGAAAAACGACAGGTCAGTACGCTGGAAGTGCAAACAGGCCCCAAGGCTGAGACGGTCATTGGCACCAAGACCATCAGAGAAAAGTATGAAGAAACAGACTGTTTTGGCAACAAGTTCTACTCTTCCACAACCTCTACTGTCATGACTACTCAGCCTGATAACAAAGCATGCTTCAGGAGACAGGTTACAACCAATCCAACCACCACTGAAGTTGTTGCATATCCAAGAATCAACACTCCCTCTATtaaagggggccaagcaccttCATGAGGAAGCTATGAGGATGGGGTTAGATaatttgatatttattattcttataaaTGGTTTTCAACTTTAGTGGTTCTGTTTGGTTTTAAAATTAGGTTTACACTCTTATAAAAAGTGCTCCTTAAAGGTTTCCTCAAGGGCTCTCTGGATGGATTAATGTTCTAGTGACGTGAAGAGGTTAGACTTGAAACCTTGAGAAAACTATGCGGACGGggttaaatgattttatatttaatatggtTATTCATGGATTTCAATGTTAGTTAAGCAGTTTGGTTTCATAATTAGTTCCTCAAAGGGTTCCTAAAGGGTTCCTGAAGGTGTCTCTGGATGGTTTAACATTCTAGCATCCTTTATTGGTTGTACTTGAGACCTTTACTGAAAGATAAATCTCCAGTTGTAGGATTATACACAGAGGGTTTAGAGGTTCTCCCAAAGGGACAAAACAAAGGACCATTTAGGGGGCTAGATGGAACCTTTTTGTGGAACCACAGAGTGTGTCTTTCAGTGTTAAATCAGTGTTCTTGTTCCACAAATGGAAATGTATTCTAATTTAAagatatataaaacacattatctaATCTCTAATATAAAGATTTAAACACAGCAATGTTTGTTAAAATTAgcttttgtaattttgtactgtaatggcttttACAGTGAGAAATAACTATTTGTGTACTTTTTGTCATTTATCTTAGCCCATTCCATAATATCATGTTGTATTAACAGTGAACTGACATAGGACATTCTTTTTATGGTGtacaataaatgtgaaaatgataataaatgtgaaaatactAATAAATTGTAACTGGATAGAGAACCTTGTTACATTATGGAAAGTTCAACCACATTAAGACCTTGtcataagaataaaaaaagtatgCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394501 lncRNA upstream 171867 16605148 ~ 16633783 (+) True G333148
TU394510 lncRNA upstream 185561 16595781 ~ 16620089 (+) True G333157
TU394160 lncRNA upstream 584705 16219553 ~ 16220945 (+) True G332859
TU394074 lncRNA upstream 703053 16102271 ~ 16102597 (+) True G332791
TU394073 lncRNA upstream 703438 16101750 ~ 16102212 (+) True G332790
TU394631 lncRNA downstream 70467 16888906 ~ 16889729 (+) False LOC113541357
XR_003404172.2 lncRNA downstream 70498 16888937 ~ 16890161 (+) True LOC113541357
TU394629 lncRNA downstream 74567 16893006 ~ 16897855 (+) True G333244
TU394762 lncRNA downstream 367690 17186129 ~ 17186675 (+) True G333360
TU395018 lncRNA downstream 544432 17362871 ~ 17363075 (+) True G333548
XM_026938283.2 mRNA upstream 120679 16639105 ~ 16684971 (+) True LOC113541353
XM_034298094.1 mRNA upstream 173598 16537653 ~ 16632052 (+) True sulf1
XM_026937906.2 mRNA upstream 276533 16444663 ~ 16529117 (+) True c22h8orf34
XM_026938048.2 mRNA upstream 362506 16326985 ~ 16443144 (+) True prex2
XM_034297857.1 mRNA downstream 135245 16953684 ~ 16960846 (+) True acaa1
XM_026937977.2 mRNA downstream 166608 16985047 ~ 17014794 (+) True plcd1a
XM_034297855.1 mRNA downstream 166973 16985412 ~ 17014794 (+) False plcd1a
XM_026937976.2 mRNA downstream 168475 16986914 ~ 17014794 (+) False plcd1a
XM_034298161.1 mRNA downstream 255774 17074213 ~ 17085476 (+) True spag6
TU393912 other upstream 1238987 15566175 ~ 15566663 (+) True G332636
XR_004576981.1 other upstream 1541063 15251635 ~ 15264587 (+) False si:ch73-173p19.2
trnat-agu_17 other upstream 3420376 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 3547234 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 4092972 12706939 ~ 12712678 (+) True G331263
TU394735 other downstream 289033 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 289033 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 466643 17285082 ~ 17300011 (+) True G333388
TU394792 other downstream 468721 17287160 ~ 17302004 (+) False G333388
TU394797 other downstream 468721 17287160 ~ 17295054 (+) False G333388

Expression Profile