RNA id: XM_026937861.2


Basic Information

Item Value
RNA id XM_026937861.2
length 2796
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC113541072
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14529664 ~ 14535320 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acattcattctaAACTTCATTtaagaatattaataaaaacataattcgGAGGCAGTTTATTTGAATGGACAAAGTGTGAATTTCGTTAAGAAACGGGGTTGCTCATATTCTCAGTGCGTTTAGCATTGAACACGTGACAGGAAAGCGTTATTACGTCAAAAGACcataagagccaatcatgttcTGATATGCAAATACAGGCCATTACAGGAGAGTATAGAAAACCTGTTCATGATAACAAGGTAGAAAGCTGAAGTTAAGAAAATGACGGACTGCATGTGTCGGGGGTGTTATGCAGGCTCTGGAGCCTCACTGCATTATATTCCAAAGGATCCAGAGATACGACAGAAGTGGATtgatttcatttacaaaaaCCGCACGGCGcctaaatttaaaaatctggaTCGCATAAGGATCTGCAGCTCTCATTTCACTGAGGAATGTTTCACTAATTACCGGCAGAAAATGATGGGCTTCGGGAAAAGGCTCATTCTTAAACCTAATGCTGTCCCGACCATAGCTGTGCAGCTGGAGTTCACAGCAGCAGCGAGCAGGACTCGACAGGAAAAACTGGAAGAAACCACAGCTGAAACACGCCTGTGCCCCTTGTGTCAAAGACGTCAAAAGGACAGTGATGCTCTTTCTTTGCACCTGACTAAAAAACACAGCGTGCATCCAGCATGTCTCGATAACCTACTCATCACTGCACCTTACGCAAACCGTTCCAGTGGAGGAGTCAGAGAATCCAGTGCACAAAATATCGATGGCACATCACAGCAGAAGTCCTGCGAAAACACCAAATCCCCTTTAATGGCAGTTCAACAAGATGGTTCTTCCCAGGAAAATGATGCATGTGCTGAATCAGTAGTAGGGAACAGAGGAAGCATCTATGGTGACACAGAAGCCTCAGTCAAAGATGATAAATTCAATGATAAAAGCAATGCTGCTGCTGATAGCAAAGTTAACCACACTTTCAAGTGTCACACATGTCTGGAATTCTTTACTAATAAGTCAGCATTGAATGCACATTATAATTCAGCCACTCATATCCAAAAAATGAGAACAGGAGCAGGGAATGATGGTGATTCCTCAATCCCTATTCTTGCTTACCCTTATGTCTCTACCAAACCATACCAGTGTGATGTGTGCCACGTCTCTTACTTTTATGCCTTCGGCTTGGAGAGCCATCTAAAGTCTGTACTGCACCAGAGTCGTACCAGGAAGGCTGGAAATACTGCAActaaatccaaaacaaatacagaaactGGAATTGTTGTGGCAAACTTGGCAGGCACCACAGTGGCTAATGCCACACAGTTAGCTGGTGCTAAGACCTATAATTATGTGACACAAGCAGAGACGGTTCAGCTTCAGCCTGCTTCCTCATTGCTTCCCACTCCAGTGGTGTCAGCTCAGGCAGTGCCTACAGTTCTTCCTCTCCTAACATTAGCTCCAAACTCTGTTCCACACGCCATTGTCCCCTCTGTCTTTCCTCCACCAGGGACTTCAACTACTCAGCTAATACCCCAACCTCAAATGCTAATGCCTCTTATCATGAATGGGCTTCAAACCCAAAGTGCAAGCCCAGATGGCCCTCAACAAATTTTGCAGCAAGCTGTGCCAGTCCTTGATCTCTGCTCAGCACAACAGACTCAAGGACTTGGCTCAAGTGATACCCAAAGTCAGTCGGCAGCTACTAGAGTCTCCAGTGCATCTCAGAAAGCTTTAGAAATGAATACAACGGTTGATGGGGTAggagtgaaagtgaaaatggaAATCAAAGAGGAGCCTTGTGATCAAGCGGTATCACAGATGACACCCTGTACAGCAGATGCTATTAGTCAGGTGGGTTTAAAACAAGAGTATAGCAGCATGTGGGATGGAATTGAGGATAGCATAGTGTGTGGTGACAAGCAGCAGAGCAAAGCCAAAGGGGtgagtgtggggaaaaaaagacaacgTTCTGATGCGAGTTCACGAAATGTTACTAAATCCAGTCCTGCAAAATGCAACCCCTCACATGCTAATCTTGTCTTAATGCCTTCAAGTACCAAGGTTTGTTCAAGCTTGTCCTCAGGACCTCCAGCACTAACCGAGTTTCAGTCTCAGGTTCTGTGGGCCTTTTTCGAGTCGCGAAATGAAGCTGATTCTGAAATTCCACCAAGAGAAGACTGTGAAGCCCTTGGCAGGGAAGTGGGACTAACTGAGGATGAGGTACGAAAATGGCTAGTGGACACCCAGGGCACCAAAGACAGGCACCGTGCAGACGTACAGTCTCACTATGAGAGGCAAGGAAGCACTGAAGATGACGAAGATGCTCTAATGATTGATGAAAGTGGGGGAATGGTTCTCCGCTCCACTACGGACTTCCTTTCAGATGAAGAGAGTGTAGATGATGAACAGACCACAGtggataaaaagagaaagaggggcATGGATAAGGAGGATTCAGAGGAGGAATCAGGAGGGGCAGAGTGCCGGTTTTACCTTCACTTAGAACAAGCTGATCCTCCAGGTGACCCTCAAGGTTATTCAATCCCTCATATATTGTTGGAGTCAGTGTTTCTGTCAGAGACTAAGCCAAAGCAGTGGCCTTTATAAATCCACCAATTACTTAGCCTCAGGGTCAAAAGTCATTTCCAACATCGTTCTATATATTAAACGTTGCTGTGGTATCTTATAATTCATTACTCACTTGGTTCTGTTTTGGGAGCTGACTGATGACCACGCACtagtttttcactttttgttaCTTTCTAATCTTACCACCTCTTcagcttttgtttcattatgatt

Function

GO: NA

KEGG:

id description
ko03022 Basal transcription factors
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576995.1 lncRNA upstream 567480 13958024 ~ 13962184 (+) True LOC117595809
TU392599 lncRNA upstream 1147028 13380644 ~ 13382636 (+) True G331502
TU392593 lncRNA upstream 1166962 13361369 ~ 13362702 (+) True G331496
TU392595 lncRNA upstream 1168646 13360280 ~ 13361018 (+) True G331498
TU392561 lncRNA upstream 1239265 13287447 ~ 13290399 (+) True G331468
TU393268 lncRNA downstream 152843 14688163 ~ 14703270 (+) True G332111
TU393426 lncRNA downstream 409671 14944991 ~ 14945212 (+) True G332238
TU393440 lncRNA downstream 420540 14955860 ~ 14956067 (+) True G332248
TU393531 lncRNA downstream 530655 15065975 ~ 15113514 (+) True G332334
TU393529 lncRNA downstream 576343 15111663 ~ 15112523 (+) False G332334
XM_026938139.2 mRNA upstream 11877 14486970 ~ 14517787 (+) True jph1a
XM_026937862.2 mRNA upstream 123902 14386961 ~ 14405762 (+) True crispld1a
XM_026937910.2 mRNA upstream 220193 14297560 ~ 14309471 (+) False cd226
XM_026937909.2 mRNA upstream 220990 14297560 ~ 14308674 (+) True cd226
XM_034298235.1 mRNA upstream 233893 14234044 ~ 14295771 (+) True rttn
XM_026937931.2 mRNA downstream 8671 14543991 ~ 14564674 (+) True zfhx2
XM_026937930.2 mRNA downstream 8671 14543991 ~ 14564674 (+) False zfhx2
XM_026937980.2 mRNA downstream 30472 14565792 ~ 14577242 (+) True pabpn1
XM_026937981.2 mRNA downstream 30473 14565793 ~ 14575630 (+) False pabpn1
XM_026937982.2 mRNA downstream 31243 14566563 ~ 14577243 (+) False pabpn1
trnat-agu_17 other upstream 1144390 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 1271248 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 1816986 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 2372877 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 2781105 11738158 ~ 11748559 (+) True ankha
XR_004576981.1 other downstream 716315 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 1030855 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 2572152 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 2572152 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 2749762 17285082 ~ 17300011 (+) True G333388

Expression Profile