RNA id: XM_026937862.2


Basic Information

Item Value
RNA id XM_026937862.2
length 4392
RNA type mRNA
GC content 0.37
exon number 15
gene id crispld1a
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14386961 ~ 14405762 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGCTGGCTGTTGGTGCTGTTGGTTTAAGTCCAGCTAAACTCTGAATGGGTTGGATATAGAGGTGTGTTTTCCATGAGATATTTGACACCAGAAGCCAAATTCAGCATAAATCCAAACCTGGTGCAGAGCTGCATTAGTGAAACAGAGGAGACAGGAGAGAAGTTTATTCACATCTCGGATGTACAGTTTTAAATCTCGTTGCTCTCAGGAAGTTTGTTAATCACTTCAGTCTCACATAGGAGCTGTATGAGCACTTTTAACCTGCTGGAGAAGATCTGAGGATTTCCCACATACACCGAGACGCTGTTCCATCTCctgaaggtcaaaggtcacgtCACCATGAGTAGCACATGGCTAAGAGGACTTGCTCTTGTTTTTTTATCCCAGAGCGCTTTCTCCATGACTCTCTTTAACGCCACAGAGCTGAGCTCTCTCTTGGAAAAATATGCTgatgaaaatgaagcaaaacCAAGAGGGAAGCGGGCAATCAGTGCCATCGATAAACAGGCCATCCTGGACCTGCACAACAAACTCCGAGGTCAAGTTTATCCACCCGCGTCCAATATGGAATACATGGTTTGGGATACTGAATTGGAGAGATCTGCTGAAGAATGGGCTGAGACATGTTTATGGGAACATGGACCAGAAGGCTTGCTTAATTACATCGGCCAGAACCTAGGAGTTCATTGGGGAAGGTATCGCCCTCCTACATCTCATGTTCAAGCCTGGTACGATGAAGTCAAAGATTATTCCTTCCCATATCCTCAAGAGTGTAATCCTTATTGTCCATTCAGATGTACAGGGCCCGTGTGTACTCACTACACACAGCTTGTTTGGGCAACCAGCAGTCGAATTGGTTGTGCCATTAACGTCTGCTATGATATGAACGTCTGGGGACAAATCTGGACGAAGGCTGTTTATTTGGTCTGCAATTACTCACCAAAAGGGAACTGGTGGGGAAGTGCTCCATATAAACATGGTACACCGTGCTCAGCCTGTCCACCCAGCTATGGAGGAGGATGTAAAGACAATCTCTGCTATAAAGATGACAATCAATACTATTATGAGGAGACAGAGGAAGACAACATCATCGAACCTGAAGCACCGATCACTACAAGACGCcccgacacacactcacatacacacagcatcaCTGTTGCGAGCACCGAACAGATGTCACAACTTGTAACATGCGAGACAAAACTTCGAGACCAGTGTAAAGGCACGACATGTAACAGGTATGAATGTCCAGCTGGATGTTTGGACAGCCCTGCAAAAGTAATTGGAACTGTGTATTACGAAATGCATTCGAGCATCTGCAGAGCCGGTCTTCATTATGGAGTGATCGATAACAATGGAGGCTGGATGGATGTCACTAGAATGGGCAGGCAGGAGTTTTTCATCAAATCATACAAAAATGGAGTTCAGTCTCTTGGGAAATATCAGAGTGCCAATGCCTTCACTGTGTCCAAAGTGTCCATACATGTTATTACATGTGAGACGACAGTGTCTGCATTGTGCCCATATGAAAGCCCTGTTAAACACTGTCCCAGAATCTACTGTCCGCAAAACTGTCTGCAAGAACACCCTCAGGTCTCCAGAGTCATCGGGACCAAAATCTATTCAGATAAATCCAGTATCTGCAGATCAGCAGTTCACGCTGGCGTGATAAAGAACGAACAGGGTGGCTTCATTGACGTGATGCCGGTGGAAAACAGGCTGTACTATTACGGCTCCTATCAAAACAACGTTTTGTCTGAGAGTATGCAGAATCCTCCAGGAGGAAAAGCTTTCCGAGTGTTTGCAGTCATCTGAGCGCATCCCGAACTCTAATCACTTTTTTCTGGTGGTTGTTTACACAAGTGATTACTGAGCTAAGTACAGTTAGAAGGTGGAGAAGAATAAGAAGATCTGTACATATTTGCCATATTTTGTTCAATTTGTTTTGCGGATGTTGTATGTAATGTTTTGTCTTTGTGATGTTCTCATCCTGAATTTAAGGCAATTAATTAGAGGACAATACAGGGATTATAATATCCAaaggtccaaaagtctgtgTGCATTACTAGAAcagttttctcattttaattaaaaaaaatgttgttagcACAGAACACACCGAGTTttaacatattcatattcagaagTACGCCAATTTCACACAGATGAACTGCAGTGTATTgtgtaataatcataataataatgataataataataataataactgtcaATTAccaaatattgtattaaaatatataagttCTGTGTAATAGCTGATGAATTACTTGGTAGtgcactcagacttttggaccccactttATATAACATCAAGTCACGTAAAGCAGTATTTGGCTTTGTGGAGGTTAGTACTCACTCACACTGAGAAAATGAGGCATGAAAAGGAAATCCATCTATAGTTGAGCAATATGTTTGACATATTGGGCCATATTCACACTTGGTGACTTAGAGATGCAGGTGGCTAAGATGAATTTTTCTTGTGGAAAGCTGTAAGAGAACGAATTTTTCAATAATATCCAGACTTCCATCtttgaaaaaaacacaagcacatgaTTTTAAGCCTAAAATACACTGAGCGAcaaaaaatgctcattttcttAATGTCAATTACAATATGATACAACGTCAAATTAAgatacagtttaaaaatgtatattaatagGATAATATATGTATCATAAGAGggcaaatattaaaataaaaaaaacaattatagcATAAAATAGTCCTCTATTTTTGCACAGTTTCGCTTAATTTAGCAGATGGGTTCATTACTTAGTTGCCATCCTTTAAAATAGCTCTTTAAAACCACAATACTATACCACAGATCCTAACATACTGTACTAATAAACTGTACTAAAAAAAGCAGGCCCAGTCACAAATCTACTTGAGTATTCAAGAGTAAAACTAAATAACTTATCAAAATTAACAATCTAGAcatggatttttaaataattaacattccTGCCCTGTTGGAATGATGCTTAAGGTGGCAttaacaaaaaaggaaaaaaaaaaaaagatagaataTTTACCAAACTATTACTTTTTAGATTTGATGGCAAATGGCCTTTGCTCAATGACTAATCAGTAAAGTTACGTGCAGTGTTTTAGGTTgtgaatttgatttttaaaatgtaatagcaGTTAAGCATGAAATTATTAGAAAAGAAATTATGGCATTTGAGATTGAAGTAATTTAAAGgtcaaaatgaaatgtaaggATTAAAATGTAGGGGTTTTTTTCTCGTGTAAATTTACTTGAGTACAAGTATTCAACAATAATTCTCAATAATACTAGAAATAGCACTTAATTACAGTAACAAAGCACAATTAGTCAAGTATTATCCACCCCTGTTCAGTTGACTCTGTGAAAGGTACTATTTAAACAACTTAAAGAAAGTGAGACACACAGGAGTGAAAAGTGATCACAGCATCATAGTGCGTTAGATATTTGATCTTGCCATGAAATGGCACTATAGTGTTTTGTGCTTGTGCATTGCTCAAAACACCAATTTCAGCATGAAATATTGTAGATATAACAAATAGCAGGAAAAGTGGCACAGGACGTAATAACAAACTTGGCTGGAGTAGATCTCACACAAGATAACTATATGTACATAATGAATAGCAAACAGTTTTTGCCATACTTTACGGAAGACCTGTCCAGGCAGGGCTTACGTGTGTAGTTAATTCTAAGGTCTGAGTACAAATGTGCACAGTTTCTGTATTAACACCTCAGCACGTCATGCCCTTGACTCTCAACTCTGAATATTAATTAAgaatatgtaataatatctgCTTATACTGTTTTAATATGTGGTCCAGTTTGTAGTCATTTTGATCTCCTGCTTTTGTAAAAGTCTAAATTGTAGCTACCTGATGAGTTAATGTTCTCATTTATCCACAAAGGGACGCATACCTTTGAGGATTTTCCGTTAGATTGTACTATGGAGGAAGTCAGCTGTGACATCCCCAATTATGGCACATGTTTAGGACGTaagttctcaaaaaaaaaatgtttttgtatttttgttattgtttatgtatttttatatccataCAGCTgctaagtattttttttctttatacctGAGGTATTGTAAATTTCAATAATGATTATATTCCTGCAGAGCAGGAAACtatatttcaataattttcgtaacaaaaaaaatttgaatattGTACTTTAACTCCATTAAACATTATGTAAATATTCTTTGTTTCAATAGTTGCACACAAGttagaaatataatttaactTGGTAGGTAACAAACAGTACTGTTTGGTATTTAGGCTTGATGCTATTTCTGTACACAATATGTTCTTTTCTGACATTGTTTTCAGAATAAGACTTTATTAATCCCATATA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG:

id description
K24243 CRISPLD; cysteine-rich secretory protein LCCL domain-containing

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576995.1 lncRNA upstream 424777 13958024 ~ 13962184 (+) True LOC117595809
TU392599 lncRNA upstream 1004325 13380644 ~ 13382636 (+) True G331502
TU392593 lncRNA upstream 1024259 13361369 ~ 13362702 (+) True G331496
TU392595 lncRNA upstream 1025943 13360280 ~ 13361018 (+) True G331498
TU392561 lncRNA upstream 1096562 13287447 ~ 13290399 (+) True G331468
TU393268 lncRNA downstream 282401 14688163 ~ 14703270 (+) True G332111
TU393426 lncRNA downstream 539229 14944991 ~ 14945212 (+) True G332238
TU393440 lncRNA downstream 550098 14955860 ~ 14956067 (+) True G332248
TU393531 lncRNA downstream 660213 15065975 ~ 15113514 (+) True G332334
TU393529 lncRNA downstream 705901 15111663 ~ 15112523 (+) False G332334
XM_026937910.2 mRNA upstream 77490 14297560 ~ 14309471 (+) False cd226
XM_026937909.2 mRNA upstream 78287 14297560 ~ 14308674 (+) True cd226
XM_034298235.1 mRNA upstream 91190 14234044 ~ 14295771 (+) True rttn
XM_034298236.1 mRNA upstream 91365 14234044 ~ 14295596 (+) False rttn
XM_034298306.1 mRNA upstream 406772 13975240 ~ 13980189 (+) True cbln2b
XM_026938139.2 mRNA downstream 81208 14486970 ~ 14517787 (+) True jph1a
XM_026937861.2 mRNA downstream 123902 14529664 ~ 14535320 (+) True LOC113541072
XM_026937931.2 mRNA downstream 138229 14543991 ~ 14564674 (+) True zfhx2
XM_026937930.2 mRNA downstream 138229 14543991 ~ 14564674 (+) False zfhx2
XM_026937980.2 mRNA downstream 160030 14565792 ~ 14577242 (+) True pabpn1
trnat-agu_17 other upstream 1001687 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 1128545 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 1674283 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 2230174 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 2638402 11738158 ~ 11748559 (+) True ankha
XR_004576981.1 other downstream 845873 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 1160413 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 2701710 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 2701710 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 2879320 17285082 ~ 17300011 (+) True G333388

Expression Profile