RNA id: XM_026937893.2


Basic Information

Item Value
RNA id XM_026937893.2
length 2596
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC113541101
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15579275 ~ 15582034 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgccacctgattggcttattagataattgcatgaatgagtagatgtacagatgttcctattaaaaatTAGCCAATGACTGTAAGTGTTAGGGCATTTTATTGAGGCTTAGAACAAGCAGAACAAACACGCCTAGGCAGCAGGGACTTCCACAAATAAATCTCAGAGAAAGACTAGAGCTCCTGCCCTCAGACTGTGCAAGTGCCTTCTTGGCAGCTGTATATAATTATTGTGCTTTGCATGGCCCCTCAGGGCACCCAGTGTTTACAATCATATAATTAGTGGAATTCTCTGTATAACTCTTGACTTTTTATTCAGTTCTTCCTGTTGAAGGACACTATTTACTAATTACTGGGAAATTAATATGGAAGATATTTAGTTCTGACCAACTGAGGGATCCTGGAAGTTTAAGGTCAGGTCATACTTGCAAATTGGCCATGTCAATACCAGCCTACTCACAAGCAAGCTATCTATCTCgttaattatcattaaaattaGGCTAGATACCTCAATTATCATAGAGAGATTTCAAATATTGTCCTAATTTCCATATCTGATGCATGATGCATTTTGTCATACAGTGGGATCaaaaaaaagtctgagagcactacagaaaatgcttctatttttttttctttttttcaatgcCTCTATCTGTTTTCAttagaaaatgtaattatttgcaATATAAgtaaaaagtagaatcttagaaatattcaCATAAATTTCAGAATTGTATCTGATATGTTGATTACATCCTGACGATCCacgttagatcaaatccatcagagtgtcgtctgagcATGTGCTTCCATGAAAGGGATGAGActcaaggaaaatctgacctacAGAGGAATGAACAAATTTGCTTCactttaaatagtgacctagaaatatGACAGAAATCGCTCCTGCAGAAATCGCCCTTCTTTGTTTTCCAGTTAATACCAGATTTTCAATATAGTCTCAGTCTTTTGCACCATACTGTATGTTACAGTCGTCCCATTTTATCCTGGTAGTGTTATATCCATATTGTTTACTAGGTTGTAGTAAATTATTCCATTACCATAGcaaaagctgagaaaaaaagaagaaaaattgtATCCCTGTTTTCCAATGCGCAAGTTGTAGTCTTTAGtcttgtgtgtggtgtttgagaTGTAGATAGCAATTTTATTTCACCTAAAAGCGCAATGTTTTGGGCAATAAGCAAATTGATGACACATTTTTGCCTAGAGAGACTACGCCTCACTTCACCTCATCTCACCTCTTTCAACACGCTATATATCCAGGGTTTCATTTTATACTCTGAATAATGGCGATTTTGTCATGCTTAATGCCCAAACAGACTTGAGAGAcacaattgttttattttagtttttttctctcatttatgGTACATTGGTAAAATGGAGAAGGGACCATTAGCAGAAATAAGGTTGAAGCCTGGAAGCTTGATTGTTAAGATTGTTAAGAGAACCAAATCCCAGCGATGTTTGCATTGCTCGTTTCCTCGGAAGATTATTCAAAGTTGTGCATCTtggtttgaatttatttgtttactgctTCTATGAGTGAATTTATTTAAGAGGTCTGTTCAGAATAGTGCTCAAATGCATCACATCGAGAGATGAAGGCTGTTCATGCTGTCCTCCTCTTTGTGGCTTTAGCAGGAGCAGCCACTTGTCAGTTAgtgagaaaaaacatttttgtgaacAGACCGTTGTCCTGGACTCAAGCTCGGGAATACTGCAAGACATATTATGAAGACCTGTCGACAATTAACACACCATGGGAGTATGAAAAGTTCAAAAATGATGTAGCAGATTATCTTTCAGCGGAATGTTGGGTCGGCCTTAGTAAGAGTTCGTTTAACTTGATCTATACTGAGTGGTCTGATGGAAGCGCTTTAGGATTTCCTGTGTGGAAATTTGGAGAGCCTAATAACCTGCGCTCTTATCACTGTGTGACTATAAACAATATGGAGCTGGCTGATTATGACTGTAAACAACCTCTGAAGTTCTTCTGCTACAAATGGGTGCCTCAGATGGTCTTGGTAGAGATGATGATGAACTGGGAAGAGGCACTGCAGTACTGCAGAACATACTACACTGACCTGGTAAGTGTGACCAGCGACAAAGATCTGAGTGTGGCCATATCGACGAGCATGACCAGTCAGACTCGCAGTGTTTGGACTGGCTTGCACTTCATGGATGGCTCATGGTTCTGGGTGAACCAGAATCATCTGGAGAACCTGACCTTGCTGCCCTCATGCCCCATCAGACCTTTCCACTGTGGAGCCCTAAAAGCTGGAGATGATGGCTGGGAAAACAGAGACTGCAATGAGGAACTGAACTTCCTTTGCAACTACTAAAAAGGGTCACTGCAATCAAAAAAATGGGACCAGATGGAACAACAAAGAAGAAGACATAGGCCTATGTGATGCATGTCTGTCTGTTACATTTTGGCTAGATTAAGTTTTGTGTGGTAGCAGCCAGAACTGAATAAATTGACTGATAATCATTTACTATTTATCCTATTGTTGTCAGTTAGATATCATGTATAACATTTTATGACAATAGTCTCATATAAACATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393913 lncRNA downstream 12629 15566187 ~ 15566646 (-) True G332637
TU393844 lncRNA downstream 182143 15345272 ~ 15397132 (-) True G332580
TU393373 lncRNA downstream 782077 14714217 ~ 14797198 (-) True G332196
TU393330 lncRNA downstream 944349 14544032 ~ 14634926 (-) True G332164
TU393312 lncRNA downstream 1014571 14537252 ~ 14564704 (-) True G332147
TU393941 lncRNA upstream 33466 15615500 ~ 15618841 (-) False sec61g
TU393956 lncRNA upstream 38472 15620506 ~ 15620717 (-) True G332676
TU393962 lncRNA upstream 48189 15630223 ~ 15630444 (-) True G332682
XR_003404161.2 lncRNA upstream 353794 15935828 ~ 15943189 (-) True LOC113541266
XR_003404166.2 lncRNA upstream 397082 15979116 ~ 15985108 (-) True LOC113541293
XM_034298225.1 mRNA downstream 19820 15417104 ~ 15559455 (-) True LOC113541144
XM_034298226.1 mRNA downstream 65269 15417104 ~ 15514006 (-) False LOC113541144
XM_026937949.2 mRNA downstream 164832 15398281 ~ 15414443 (-) True LOC113541141
XM_026937950.2 mRNA downstream 164834 15398283 ~ 15414441 (-) False LOC113541141
XM_026938050.2 mRNA downstream 199000 15337379 ~ 15380275 (-) True LOC113541204
XM_026937817.2 mRNA upstream 33464 15615498 ~ 15618842 (-) True sec61g
XM_026938187.2 mRNA upstream 194987 15777021 ~ 15899598 (-) True LOC113541299
XM_026938237.2 mRNA upstream 514947 16096981 ~ 16115913 (-) True LOC113541324
XM_026938238.2 mRNA upstream 543083 16125117 ~ 16140956 (-) True tnfrsf11a
XM_026938239.2 mRNA upstream 543777 16125811 ~ 16140956 (-) False tnfrsf11a
TU393587 other downstream 513465 14965813 ~ 15065810 (-) False LOC113541115
XR_003404167.2 other downstream 641871 14936886 ~ 14937404 (-) False LOC113541102
TU392350 other downstream 2901342 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 2901342 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 4496124 11082268 ~ 11083151 (-) True G330379
XR_004576965.1 other upstream 1248662 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 1248662 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 1534064 17116098 ~ 17139685 (-) False zbtb47b
XR_004576994.1 other upstream 1603490 17185524 ~ 17239106 (-) False vipr1b
TU395488 other upstream 2325860 17907894 ~ 17908812 (-) False LOC113541127

Expression Profile