RNA id: XM_026937902.2


Basic Information

Item Value
RNA id XM_026937902.2
length 1111
RNA type mRNA
GC content 0.47
exon number 11
gene id ngdn
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14578785 ~ 14586869 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGAAAATCGCGCATCGTGAAATCCCACTGAAAGAAACGTGTGTGTCCCACTGTGCCTGCTGTAGTTCAAAATGGCGGCTCTCAGTGTACAGAACGATGTGATTGAGGACGATCTGCCTAAAGCCGTGCAACTACTCAACACGCTCACACAGCAGATTGCATTTGTTACAAGCCACGTTCGAGACGTGATAAAGAAAGTCCAGAATAAAACATGTCCAACTTCTAAGGGTTTGTCCTTTCTGGACCTGCGATACCATCTGCTGTTATTTTACCttcaagatgttgcacatttGATAAGCATTAAAGCAGATGGCCAGAGTTTGAAGGACAACGGCGCCATCCACAGGCTGGTCACCATAAGAACGGTTCTGGAGAAGATGCGTCCTCTCGATCAGAAGCTGAAGTATCAGATTGATAAATTAGTGCGCACTGCTGTGACTGGCAGTCTGGCTGAGAACGATCCTTTACATTTCCGTCCGAATCCTGAGAATCTTGTCAGCAAGcttGATCAGTCCGAGGAATcagatgatggtggtgatgatgatactggaaataaaaaagattcTGGGAAGAAGGCGACCCCCAAAGCCAAGAAATACATCCCACCAAAGATCGCCCCAATGCATTAtgATGGTGATTTGACGGAGGCCGATAGGCAGAAGGAGCTTGTGGATAAACGCAGGAAAGCGGCGTTCCGTAGTTCAGTGATCGGGGAGCTCCGGCAGCAGTACAGCAATGCGCCAGAGGAAATCCGCGAGCGCCAAGATTttcagactgagagagacatcAGAGAGGAACAGCACAGGAAAAACTATGAGGAGTCTATGATGGTGCGTCTAAGTGTCTCACGAGATCAGAAGGCTAAGAAGAGACGCATGATGGGAATGTCCTCACAGCTGAAGAGCATCACACACTTCGGTGACATCACAGCGCTGACCGGCGGAGAGGCACCAGATTTGGATAATCCCAGacccaagaagaagaagaaactgctgaagaagaaaaacaaaaagaagatGTTCAAGAAACGCAAGTAGAGGTTCTCTACGTCTGGATTGAGACAGGATGGTTTTCATTTGCCTAcatcttcaaaataaaaataatcaaccccA

Function

GO:

id name namespace
GO:0006417 regulation of translation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K14765 NGDN, LCP5; U3 small nucleolar ribonucleoprotein protein LCP5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393312 lncRNA downstream 14081 14537252 ~ 14564704 (-) True G332147
TU393340 lncRNA downstream 56170 14513735 ~ 14522615 (-) True G332169
TU393341 lncRNA downstream 57137 14517639 ~ 14521648 (-) False G332169
TU393198 lncRNA downstream 112172 14466394 ~ 14466613 (-) True G332056
TU392965 lncRNA downstream 819495 13758929 ~ 13759290 (-) False LOC113541105
TU393373 lncRNA upstream 127348 14714217 ~ 14797198 (-) True G332196
TU393844 lncRNA upstream 758403 15345272 ~ 15397132 (-) True G332580
TU393913 lncRNA upstream 979318 15566187 ~ 15566646 (-) True G332637
TU393941 lncRNA upstream 1028631 15615500 ~ 15618841 (-) False sec61g
TU393956 lncRNA upstream 1033637 15620506 ~ 15620717 (-) True G332676
XM_026937932.2 mRNA downstream 38021 14536562 ~ 14540764 (-) True thtpa
XM_026937825.2 mRNA downstream 95940 14475937 ~ 14482845 (-) True gdap1
XM_026938127.2 mRNA downstream 149415 14419894 ~ 14429370 (-) False pi15a
XM_026938126.2 mRNA downstream 149415 14419894 ~ 14429370 (-) False pi15a
XM_026938125.2 mRNA downstream 149415 14419894 ~ 14429370 (-) True pi15a
XM_026938179.2 mRNA upstream 31174 14618043 ~ 14629435 (-) True prdm14
XM_026937935.2 mRNA upstream 48817 14635686 ~ 14695608 (-) False ncoa2
XM_026937934.2 mRNA upstream 48817 14635686 ~ 14695608 (-) True ncoa2
XM_026937936.2 mRNA upstream 48817 14635686 ~ 14690431 (-) False ncoa2
XM_026937937.2 mRNA upstream 48817 14635686 ~ 14659303 (-) False ncoa2
TU392350 other downstream 1900852 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 1900852 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 3495634 11082268 ~ 11083151 (-) True G330379
XR_003404157.2 other downstream 3648010 10923126 ~ 10930775 (-) False ackr4b
TU391129 other downstream 4055522 10522732 ~ 10523263 (-) True G330185
XR_003404167.2 other upstream 350017 14936886 ~ 14937404 (-) False LOC113541102
TU393587 other upstream 378944 14965813 ~ 15065810 (-) False LOC113541115
XR_004576965.1 other upstream 2243827 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 2243827 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 2529229 17116098 ~ 17139685 (-) False zbtb47b

Expression Profile