RNA id: XM_026937906.2


Basic Information

Item Value
RNA id XM_026937906.2
length 3223
RNA type mRNA
GC content 0.50
exon number 15
gene id c22h8orf34
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 16444663 ~ 16529117 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGGAAAGAAGCGGTGTGCACCGGGAGGTCCTGTCCGGTCTCATGCAAAGCCAGAGCTCACACTTTACTCTGTGTTTCTGCACAAAAACAGGACCTGCAGCTTCAGCACAAATTCTTTACCGCAGCCTttagtactattattattattattgttattttttccttttaaccGAAAGCACATTTCATTTCTCTGCTGAGGATGCGCGCGCGCTGGTCCAGCAGCacacctcctcttcctcctcctcgcCTTGTGTTAATGTAGTGTAAATGTGGTGTGATGTAAGGAGTGTTCTCCATGGCGTCTCAGCAACAGTCCCGGATCCAGTCTTACCTGGAGAGGAATAAAATCGGACCCCTGTTTGAGGAAATGATGACCAAACTGATAACTGAGACTCCAGACCATCCGATTCCATTTCTAATCGGACATTTACAGACCAAACAGGAAAGTCCAGGCCGGCTTCACCGAACGCTGTCTGGATCTGCAGCTCTGTGGGCCGAGAGCGGCTGTTCAGAATATAAAAGCAATCGACGGGATTTCAGGAGTTACGACAGAGCCTGGCAGATTCACCCCAAAAAGCCCAAGAAGTCCAAGAGTGACTTAGCAGTGTCCAAcatttctcctccttctcctgagTCTAAATCACTGCCTCGTTCCATAGAGTGTCCCTCATGGGACTGGAGGACCAAACCCGAGAGCCGAGACTTTGACGAGCTCAACCACATcctgagagagagcaagaagcTGGGCAAAGCGTTGGAGAACCTGTCCCGAAGTATTGCCTTATCTGATGAGCTCGATCAGGGCCCGCGGCTTTATAACTCAGTGTTGCGGCCCCGTGTGGTGGGCGAGTGGCTGGGCAGAGACGAGGATGATGCTGACCCGCTGGCTGCTGAGATGCTCCAGCCACCTGTCCCGAGGGCAAAGAACGAGGGATGGAGCAGCCGAGACACCAGTCCTGCAGGGAGTCTGAAGATGGAGGTGAAGACGAAAGGGctgaaacagcagcagcagcaccggAAGAAGCTCCTGGCGGCCATGTTGTCTCAGGACTCGTTTGAGTCCATGGCCAGCTCGGCTCCGTCCGTCACCGAGGACGAGATGGAGGACGAGGACGACGCCATGGAGCTTCTGGAGGACCTGGATGACCTGAGGATGGAGGGGGTCACTGGCCTGGTTTCTTCTGGCAGTAAGTTCAGCCAAGGGCGCAGCTCCTACTGCCCCGAACCGCAGGCCAAAGTCACCCTCAACATCTGCTCAAGGTGTGCCAGGCTTCAGGGGGATAGTCTCGCTCCAGCCGGAGCTGAAGAGGAACCAGCACCGCATGTTCCTGAGCAGGCCGTGCCTGAAGTGACATGTCCATTGCCTGGAGTGACAGAGCCTCCGACTGCCGCCGAGCTGGAACTCCAGAGTACTTCTCAAGTGTCCGCTCCGcgaTACCCTGCATGGGCGCCGGACGTGAAGCCGGTGAGAGGCACGAGCCCAAAGGCACAGAGGCGTGCTCTACAGCTCGAGGAGCTTCTCTTTTCTAAAGAGCTGGAGAACATGGGCAAGCACCTCGCTGAAGTGGAGAAGGACTTGGCCAAGCTGGCTGAACAAGGGAAGCTCAGCAGGAGTCCCATCAGCCCCCACAGCAGCCTGCTCCTGCCTGTGAACCCCCAGAGTGCCAACGCTCTTCCCATGCCAGGCTTCAGCTCCAAGCCCAACTCGCCAAGCAAGACTCCCATGCTGCCGCTCATCATCAGCCGGACTCAATCTCCCAGCAACCCCTGCAGCCGAGCCCAGACTCCCAGCAGGCCCCTGACCCCCAACAGCCTCATGATGCGCTCTCTACCCACTGCTAGCCACGGAAACCCAGATCGTATGTACAGGCGCTCCAGGAGCAGACCGGTTACCCCGACTGGGCAAATAACGCGACCTCTTTTGACCCCGCCAGGTCTCAGCAGCACGGACAGCTTCAGTCTGCGCAGCACACTGTCTGAGgatgAGTTTTACCGGCAGCTGCAAGCCGTCAGACAGCCTTGGCTCATCCCCAGTGACACTGAGAGCGAGTGTATGGAGCGTCCAGAGCAGGACAAGTGTAACCCTGGCGGAATGAGAGATGCCAGTAAACGATCAGTGTTTTCAGgcttATAACACGACAACTGCAGATGGAGACCCAATCATATTTATGCAATCTAAACGGGCATTTTGAACATTGTGAATAAGCCAGAGAGAGacttattttttataattcctatttaaaaaaaaggattgtgTACTTTTTTTCCACAGAGGTTAATATTTCTTAGAACCTGGCACATCTGTATGCTAAAGTACAAATACTTGAAATTAGAGAATGTAGTATGTTGATAAGAATGCTGTCTATCTgctgtgtttgatttgtttgcctttttaGCATGCTTCCCATTACTGAGTTATGGGAGAAAATCTTGACACATGGCCTTGCATTGAAGTTATGTATACGATTTTATGTGccaactgatgaaaaaaaagatatttttgataACCATTTTCAGTAAAGGAAATGGCAGCCTTGTTTAGATGGATGTGTGAATATTAAAGCTAGGTAGAGAAGCACCCTTAAGCCAggtttacactgtatgattttcagcCCAGTTTTATCACTGCAGAGGAAAAGCGCACATCCTAAAAGAATCTGGCTCAGTGTGGCagccagggaaaaaaaaaaaaagttctgtcaGTGTTTGAAATGTTTGAGTAGAAACTTAGAGCGTGAGCGTTGCTTCAAAGCTTGTCTAAAAGTAAGGTGACTTACGCAGGATTACGCAGAGTTGATGAGAGAGCTACAAAGACGTTAGTAGCAATGTCGAAGCATAAACAAAACAagctaatggaaaaaaaacatccttattacctcaagcgcACTtgagaatgtttctgtttttccgCTCAAGCCCAGATCAGTCAGCTTGATGACGTACGCAGAACGtagacattttctttaatctaTCGTTAGAGAAACTTCGTTCGAGAATTTGAGATTTTTCTGGGATCATCTCATACAACGTGACAGAATCGTACAGTGTAAAAGAGGCTATATCCTGTATCACTGCCCTGGAAGACCAACACAGCAAGCACTCTTTTACTTCCTACAACGAATGACAAAAGTAACGTGTAGAACAAGATGagatttatttgttattttgtacCAATGATGCACTACGTATATATATCGCCTGCTACACCTTGTATGATGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394160 lncRNA upstream 223718 16219553 ~ 16220945 (+) True G332859
TU394074 lncRNA upstream 342066 16102271 ~ 16102597 (+) True G332791
TU394073 lncRNA upstream 342451 16101750 ~ 16102212 (+) True G332790
TU394071 lncRNA upstream 403076 16041384 ~ 16041587 (+) True G332788
TU393930 lncRNA upstream 827429 15592088 ~ 15617234 (+) True G332650
TU394510 lncRNA downstream 66664 16595781 ~ 16620089 (+) True G333157
TU394501 lncRNA downstream 76031 16605148 ~ 16633783 (+) True G333148
TU394614 lncRNA downstream 203799 16732916 ~ 16829979 (+) False G333232
TU394612 lncRNA downstream 242886 16772003 ~ 16829979 (+) True G333232
TU394631 lncRNA downstream 359789 16888906 ~ 16889729 (+) False LOC113541357
XM_026938048.2 mRNA upstream 1519 16326985 ~ 16443144 (+) True prex2
XM_034298091.1 mRNA upstream 1519 16352774 ~ 16443144 (+) False prex2
XM_026938234.2 mRNA upstream 225650 16200496 ~ 16219013 (+) False LOC113541322
XM_034298094.1 mRNA downstream 8536 16537653 ~ 16632052 (+) True sulf1
XM_026938283.2 mRNA downstream 109988 16639105 ~ 16684971 (+) True LOC113541353
XM_026937856.2 mRNA downstream 276529 16805646 ~ 16818439 (+) True LOC113541068
XM_026937855.2 mRNA downstream 276532 16805649 ~ 16818439 (+) False LOC113541068
XM_034298105.1 mRNA downstream 276533 16805650 ~ 16818439 (+) False LOC113541068
TU393912 other upstream 878000 15566175 ~ 15566663 (+) True G332636
XR_004576981.1 other upstream 1180076 15251635 ~ 15264587 (+) False si:ch73-173p19.2
trnat-agu_17 other upstream 3059389 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 3186247 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 3731985 12706939 ~ 12712678 (+) True G331263
TU394735 other downstream 578355 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 578355 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 755965 17285082 ~ 17300011 (+) True G333388
TU394792 other downstream 758043 17287160 ~ 17302004 (+) False G333388
TU394797 other downstream 758043 17287160 ~ 17295054 (+) False G333388

Expression Profile