RNA id: XM_026937922.2


Basic Information

Item Value
RNA id XM_026937922.2
length 3366
RNA type mRNA
GC content 0.46
exon number 1
gene id skida1
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13274660 ~ 13278025 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGTGGCTTAAACCAGCACAGGGAACAGCAGTTGCATTTTGGGGGCTTTTAttcgcctctctctctctctctctctctctctctctctctttatccgTTTCACCTTCCCTCTTCTCTTCATGGGGAAGGAGAGAGCTGAAGGGACTGCAGGTATATAAGAGCTCCATGCAACATCTCACATATCCATCATGTTGCGCCTAGCTGAATGGACATGCTGTTTTACATTATTTCAGGACTATTCCTTCtctatttttagatttttttccctctatttcaaacttttttttccctcagtgtGGACCTATTCGTGGTCCACGTTGAACTGATCAGCAGTGATGCCTTGTGATAAAGCAACTGCAGTAGCAGAGGAGCATCAATGCTGGGATTCTTAACAACACAATAAGGAAAATGGGAGACTTGGAGTTTGGCTTCGAGGAAATGCAGGGTGTAAAGCTCGGGTATCTGGTCATTAAAGGCAAGCAGATGTTTGCCCTCTCCCAGGTCTTCACCGACCTCTTAAAAAACATCCCACGGACTACCGTGCACAAACGGATGGATCACCTGAACGTGAAAAAGCATCACTGTGATCTGGAGGAGCTGCGAAAGCTCAAAGCAATAAACTCGGTGGCTTTCCACGCAGCCAAATGCACTCTGATCTCCAGAGAGGACGTGGAGGCTCTCTATTTCTCCTGCAAAACGGAGCGCGTGCTGAAATCCAACAAAAGGAGAACGAAGACAAAAGCAGACGAACACATCCGAGGTGAAGACCGTTCCCACGACAGCACAAACGGCTTCTGGAAGAAGAAACTTTGGCTGAGTTTTCGCGGAGTGTCGCCGACTCTGGCTCTTCGAAACAAAGCTGTCAGACCGGAGCTCTCGTCCAATCTACCTCAAATTTACAGCAAATCCATCTACCAGAACTTTCAACCGGTAACCCCGACTGCATGCAGAGCCTTCAGAAACTATGAAACTGTGCAAATACCTGGAAAATGTGTGGAGTTTAATGAGAAACGCTCGTTTTTTCGAAGCGGCGAGGCGGTGAAGCGAAAGCCGGCTGTGTCCGCCATTTCGGCTCCGTCCGACTCGGAGCTGCTTTACAAAAGGAAAAGGAGGTGCGAGAGACACTTCGGGAGCAGAAAACGACACTACAGGCAGGTCTTGCTCGTTCCTAAGTGCTGCAAACCCAAAGCATGTCTGGCTAACGGATCTCTGAGCCATTTTCACCCGGATCGGGAGCTCTACTTGGAGTCCCGGCATTTTCAGGAGAGCTGCAGCAGCGACACCGAGTGCAGCTCCGCCAACGACTCGGACTTTGGCTCAAGTTTGTCCACCAGCAGTAGCACCAGCAGCTCAACCAACTCTGCAACTACAGACGACGAGGAGGAAGACTCCTTTTCCGGTTCTTCAGAAGAAAGCAGTGATGGAGAGAGCTCGTCTCAGTCCGATTCAAGCTCCGTGTCCAGTCGGGTTTCGGTGCAGAGCATCAGATTCAGGCGCGCGCGCTTCACGAGCCTCAACGCAAAAGCGCCTCTGGTTCTGCAGCCTACTTTCCACTACAGGTCTAATTTTCAACCCAAAAATGGAGGTGTGCATGCAAGTGCTGCAGCTCTGGATTGTGagaaagggaggaaaaaaacgaCTTTGGACATTACCGACTGGAAGCACAGACGCAGGGAATGTGATGACTGGGACTGTGGGAAAAATGTGTGCACGGTTGGGAATTGTTTCTCAGGCCTGAAAAGAGTCGTGGCTCCACAAACGGTAGACTTTTCAAACGAGCCAAAGACAACCGAGCTTCTAAGTGgtagaaataaatatgtaagtTTTACATCCTGTGCAGATGGAAAGGTGTTTCCCCAACAAAGAGCGTCAGGATACCAAGCCACATTACCACACTGCAATCAGGACAAAGACACTGGCATTTCTAAGGCTCATGATAGCAATTTTTCGGAAGGTGCAAATTCCAAAAAAGATGCAAAAACAGTCAGCTGCCTCAAGCAACCATCACCTCTGAAAACAGTAAAGACTGAGACCGAGGAGTTCACCACAATCACAAACTCAGACACTACAGGAGACACGAAACTGAACCACGTGAAAATCAAAGTGGAGGACACTTTTGATGAGTATGAATATGCAACCCAAGACCATGCTCACCAATGCAAAGATAAATACGATGAAAATGACGCGGACGGTTTGTGTATCAGTGCTGATACTGCAGAAACAGATCGTGGTAAAGATGGCAGACAAACATTTCCCCCTCCTTCTAAACAGGAACCAAGCAGCACTTTAAACACTCAAGGGGATTACAAAAACGGTGCAAGGGTCAGGAAAAGCTACCGGACTCCAGTTTGtgggaaaaagacagaaaatggaGTTAGGACAAATGCGAAGGTGGACAGGAGTCCTAGACCTGCTGGCAAATGTGTGAGCAAACGAACTGCCCAACATGCATCCTCTTTGAAAACAACTTTTAACTTCATGGCCAATTTTCCATGCCCTCCGTCTCTGATCATCGGTAGTGATGGAGATTTGAGTCCTGCTTACTCTTTAACCTCTTTCAGGACTAACCAGGTGCCTCATCCTTCTCATCCGGTGTGGACATGGCAGCTCGGCACTTCTGTTATACCTCCTCACCTTAACCAGAGATTcaggaaaacaacaacataagCCAATATTTGAGAGGACAAGTCTTAAGGCACTGATAATGATtataaatggcttttttttttggttttggtgaGCATGCAGGAGGCCTACTCCTTCACTCCTTCATCACGTGCCACAGAAGCCCAGCATTTTTTTCACCCTGCTTTACGGAACactgtggatgttttttttttatatatatatattttcattaacaATGGCAAAGAACATCTTGTGGATTTGTACTAGGACCTGTTGGAATTTCAGACTACGTATGAATGCCATTTTGGAATAGACCCATACATATTGCCAGGAAAGCTTGGCTTTGActattaaaataatcttttaattttttttttttttttttttttgcaatagtTGCAGATCCCAAATATTTTCCCCAAACGTCCCCATTCACAGGACTCTTAAACTCATTGTAGGCATCTACATTGGACCGGGTTTACGTATTTATTCAAGGGCTGAAGCCCAGTTGGTCCAGACCCCCGTCCCATCCTGTCCCgtccccccaacacacacatacacacaccacaacaatAACAGAAAGGCCCTGGACGATTGACAATCAGGAGCTGTTTGGATTTGCACGAAGTTAAGAAGAGGGGAAAAACTCCAAATCGATGTGGTTAAGGCATTGATAGTCTATGGTAGGAGCTGAAGCACAGATTTGACTATGCATTGTTACAATGCTGTACTGCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392580 lncRNA upstream 249 13274127 ~ 13274411 (+) True G331487
TU392579 lncRNA upstream 619 13273743 ~ 13274041 (+) True G331486
TU392575 lncRNA upstream 5018 13269427 ~ 13269642 (+) True G331482
TU392573 lncRNA upstream 10074 13264349 ~ 13264586 (+) True G331480
XR_004576956.1 lncRNA upstream 14102 13258456 ~ 13260558 (+) True LOC117595778
TU392561 lncRNA downstream 9422 13287447 ~ 13290399 (+) True G331468
TU392595 lncRNA downstream 82255 13360280 ~ 13361018 (+) True G331498
TU392593 lncRNA downstream 83344 13361369 ~ 13362702 (+) True G331496
TU392599 lncRNA downstream 102619 13380644 ~ 13382636 (+) True G331502
XR_004576995.1 lncRNA downstream 679999 13958024 ~ 13962184 (+) True LOC117595809
XM_026938128.2 mRNA upstream 232144 13021167 ~ 13042516 (+) True cul1b
XM_026938097.2 mRNA upstream 259551 12766560 ~ 13015109 (+) True LOC113541231
XM_034298168.1 mRNA upstream 562009 12710626 ~ 12712651 (+) True ccl34b.4
XM_026938277.2 mRNA upstream 566657 12706939 ~ 12708003 (+) True LOC113541349
XM_026938086.2 mRNA upstream 775614 12428457 ~ 12499046 (+) True hs6st1b
XM_026938109.2 mRNA downstream 44312 13322337 ~ 13334525 (+) True armc3
XM_026938148.2 mRNA downstream 58313 13336338 ~ 13341661 (+) True msrb2
XM_026938165.2 mRNA downstream 65721 13343746 ~ 13350216 (+) True c8g
XM_026938162.2 mRNA downstream 95539 13373564 ~ 13379652 (+) True klhl15
XM_034298205.1 mRNA downstream 95789 13373814 ~ 13379652 (+) False klhl15
TU392569 other upstream 16244 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 561982 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 1117873 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 1526101 11738158 ~ 11748559 (+) True ankha
XR_004576969.1 other upstream 2291445 10874209 ~ 10983215 (+) False acad11
trnat-agu_17 other downstream 107176 13385201 ~ 13385274 (+) True trnat-agu_17
XR_004576981.1 other downstream 1973610 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 2288150 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 3829447 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 3829447 17107472 ~ 17110027 (+) False hhatlb

Expression Profile