RNA id: XM_026937924.2


Basic Information

Item Value
RNA id XM_026937924.2
length 2343
RNA type mRNA
GC content 0.48
exon number 2
gene id bhlhe22
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18214863 ~ 18217206 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGTGGATGTGGACACACAGGAGCGCATTTAGGAGGAGTCTCCGCTTCCTCGCGTCTCACTTTTGATTTGACAAGTGAAGATTCGCGCTTCACATGACACACACGTAAGAGTAAGAGATTGCGCGTCTGAGTCCAGTCTGCgggataaaaaaacaataaacgaTGGACAGGAGGACGAACTTTGGGGACGTTTTTCACAAAACTCTGAGCGTCTCGGGTAAAAAGATGGACTCGTTGCGCGCTCCGGGTGCCGAGCCGCCGTGCAGAGAGCGCCAGTCGCCGCTCGGATCTTTCGAACCGCCCGACTCGGACCCGCTTCAGGCTGTCGGAGGAGGAGTGGGGTCTCTCGGCCTCCCTGGTGGATCCATGCGGGCGCCATACGGCGTTGGAGGCGAGGGCACGAGCGGACAGAGCAGCGGCGGGGAGCAGAGTCCGGACGACGACAGCGACGGCCGGTGCGAGATGATGCTCCTGGCGACGGCTCGAGACGGGAGGACGACTTCTGCAGCGGCGGTGCGTCGAGCGCCAAAGTGCGACACGGGGAAGAAGAACCGGGAGCAGAAGATGCTGCGGCTCAACATCAACGCGCGCGAGCGGAGACGGATGCACGACCTGAACGACGCGCTGGACGAGCTGCGAGCGGTCATCCCTTACGCGCACAGCCCATCCGTGCGCAAGCTCTCCAAGATCGCCACGCTGCTCCTCGCCAAGAACTACATCCTCATGCAGGCGCAGGCGCTGGAGGAGATGAGGCGGCTCGTGGCGTACCTGAACCAGGGCCAGGCCGTGTCGCTTGCGCCGAGCCTGAGCGCGTACGAGCAGCCGCCCGGGTACCCCGCGTTCCCCTCCGGAGCCGCCGCGGCCTCTTCATGCCCCGACAAATGTGCCCTTTTCAACAGCGTCACCTCCAGTCTGTGTAAACAGTGTACCGACAAGCcttaaaactctctctctctctctctctctctctcttctctctctctctctctctctctctgtgagacTGAAACTGACGCCTGTAGGCTGCATTTCATATTCCAAGAACGGACAGAAAAGAATTCTCAACTTTTCTTACATCGACTAGGATTTCAGCAGATTTGCCGCAGATCCAACAGTTTGTTTTGttcgtttttctttctttctttttttttttgttcagataCTTgatatctatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgcgctgtgtatgtatatataaagtaaGTGCTGGTGCGAGTGAATTGAAAGCAAACAAAGTCTATGTGTGAATGTTGAGGATGGACAGTTTATGGAAATATGGACCCTAACACAGTGAGCTGTTCCGACCTGGCAACATGTGAGCATTACTTTTACTTTGCCTGCACCTTTTATCCTGGGAGCTCTTGCTTAATAGCTAtcctgcaataataataataataataataataataataataataataataatgtttcagtTAGGAATTTCACGTCCTTGTTTGAGTTTTGGTGATAATAAACTAGTAGCATCTATGACTTGGAAAGCAGAGGATTGGAAATTGCAGAAATGAGGGACTTTTTTGTCACAGCTGATTTATAACATTCCCACTGCAGGCTTGTTTGAGTCACTGAAGTTGACTTTGGGTTGAATTTATAGGTCTGCATGCGTGCTATAAGTCTCTTTGCTGTACATctggcttctttctttcttttgtattcTTTCCCTCCACTCTCATGCAGCAGGCTGTGAATGAGATTTCGGCTTGGGCTTGTTGTCAGGTCATCCTGATGAGCACTGCAGATACATCCGGTTCACTATGACTGCACAGGGCCATTTGTACATGTTgatgtcctgaaaaaaaaaagctttattaaaatattttgatcaAACTTACACTTTTTCGCCTGGTTGTTTGATGGGAAAGAGTGTGAAGAGACTAAGGGCTGCTTGGTCAGATATTTGTGCATATCTGTGAAAGATTTAAGTGTAGGATGAAAAGCTAACGAGTCATGcaaacatgttttcatttttttaaacaaacctaTGACAAAATAAGTCGCAAAAAATCTAATATCGAGATTATATGTGTTATAAAGTCCTTCTAAATGAAGGCATGATGGATGAATATAGTGGAGTCTCGAGTATCATAAGAGAAGGAGACtaattatgattataattattgAAACAATTTCCATAACGGTGTGTGTCATGTGTTAATTGGGAAACAACGAAGTAGGAAAACTGTCGAGTGCAATCATTTAATGAAACGTAGCGTTAAAGCAATTAAAAGCTCGCGCAGGTGATTAGGGAATGTAATTATTCACTGGTTTAATTGGGTGTGTTTAATCAC

Function

GO: NA

KEGG:

id description
K09086 BHLHB4_5, BETA; class B basic helix-loop-helix protein 4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395656 lncRNA upstream 11183 18203063 ~ 18203680 (+) True G334077
TU395657 lncRNA upstream 11958 18200395 ~ 18202905 (+) True G334078
TU395608 lncRNA upstream 106059 18085319 ~ 18108804 (+) True G334032
TU395604 lncRNA upstream 135493 18079151 ~ 18079370 (+) True G334028
TU395574 lncRNA upstream 169686 18043824 ~ 18045177 (+) True G334005
TU395716 lncRNA downstream 79437 18296643 ~ 18324885 (+) True G334120
TU395714 lncRNA downstream 85656 18302862 ~ 18324824 (+) False G334120
TU395829 lncRNA downstream 218515 18435721 ~ 18437406 (+) True G334209
TU395830 lncRNA downstream 221943 18439149 ~ 18439446 (+) True G334210
TU395831 lncRNA downstream 223049 18440255 ~ 18440656 (+) True G334211
XM_026938136.2 mRNA upstream 116948 18087647 ~ 18097915 (+) True ythdf3
XM_026938188.2 mRNA upstream 231443 17973204 ~ 17983420 (+) True lipib
XM_034298173.1 mRNA upstream 251392 17960988 ~ 17963471 (+) True zgc:112408
XM_026938160.2 mRNA upstream 263237 17942428 ~ 17951626 (+) True chodl
XM_026937954.2 mRNA upstream 432452 17761531 ~ 17782411 (+) True pan3
XM_034298031.1 mRNA downstream 98148 18315354 ~ 18323295 (+) False mtfr1
XM_026938225.2 mRNA downstream 155516 18372722 ~ 18378196 (+) True dnajc5b
XM_026938222.2 mRNA downstream 163085 18380291 ~ 18390865 (+) True trim55b
XM_026938223.2 mRNA downstream 163239 18380445 ~ 18390865 (+) False trim55b
XM_034298263.1 mRNA downstream 179021 18396227 ~ 18432150 (+) True si:dkey-97a13.12
TU395491 other upstream 221849 17986762 ~ 17993014 (+) True G333943
TU394795 other upstream 913166 17292031 ~ 17301697 (+) False G333388
TU394801 other upstream 914852 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 919809 17287160 ~ 17295054 (+) False G333388
XR_004576961.1 other downstream 98150 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 98152 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 98154 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 98477 18315683 ~ 18323295 (+) True mtfr1
trnaa-agc_15 other downstream 162096 18379302 ~ 18379374 (+) True trnaa-agc_15

Expression Profile